Wall clock time and date at job start Tue Mar 31 2020 12:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37858 * 120.05770 * 2 1 4 4 C 1.38641 * 120.11302 * 179.70292 * 3 2 1 5 5 F 1.35101 * 119.87648 * 180.31853 * 4 3 2 6 6 C 1.38670 * 120.23823 * 0.59345 * 4 3 2 7 7 C 1.37813 * 120.12381 * 359.68319 * 6 4 3 8 8 C 1.39625 * 120.05637 * 180.27244 * 2 1 3 9 9 C 1.47721 * 120.12432 * 359.97438 * 8 2 1 10 10 O 1.21564 * 119.99518 * 353.53739 * 9 8 2 11 11 N 1.34772 * 120.00464 * 173.53955 * 9 8 2 12 12 C 1.46498 * 120.00277 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.32349 * 34.99928 * 12 11 9 14 14 C 1.47095 * 109.33109 * 154.65052 * 12 11 9 15 15 C 1.52559 * 114.32835 * 183.05988 * 14 12 11 16 16 C 1.50882 * 109.35913 * 274.98803 * 15 14 12 17 17 C 1.53944 * 110.09844 * 91.88900 * 16 15 14 18 18 N 1.47605 * 112.13629 * 319.43639 * 17 16 15 19 19 C 1.36943 * 118.63688 * 137.87021 * 18 17 16 20 20 H 1.08003 * 119.99892 * 213.35951 * 19 18 17 21 21 C 1.38808 * 120.00349 * 33.36413 * 19 18 17 22 22 N 1.31617 * 120.00013 * 11.38342 * 21 19 18 23 23 Si 1.86806 * 119.99807 * 191.38533 * 21 19 18 24 24 H 1.48501 * 109.47111 * 60.00145 * 23 21 19 25 25 H 1.48500 * 109.46917 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47157 * 299.99581 * 23 21 19 27 27 C 1.44651 * 122.54602 * 317.85339 * 18 17 16 28 28 H 1.09003 * 109.46922 * 262.60915 * 1 2 3 29 29 H 1.08997 * 109.47511 * 142.60682 * 1 2 3 30 30 H 1.09004 * 109.46973 * 22.60099 * 1 2 3 31 31 H 1.07994 * 119.94300 * 359.97438 * 3 2 1 32 32 H 1.08005 * 119.94094 * 179.70470 * 6 4 3 33 33 H 1.08003 * 120.06343 * 179.97438 * 7 6 4 34 34 H 0.96998 * 119.99677 * 0.02562 * 11 9 8 35 35 H 1.09003 * 108.50901 * 304.31911 * 14 12 11 36 36 H 1.09005 * 108.50707 * 61.96342 * 14 12 11 37 37 H 1.09004 * 109.49121 * 34.95244 * 15 14 12 38 38 H 1.09002 * 109.49100 * 155.01762 * 15 14 12 39 39 H 1.09006 * 109.36544 * 212.08464 * 16 15 14 40 40 H 1.09000 * 109.36223 * 331.82309 * 16 15 14 41 41 H 1.08999 * 108.94679 * 80.11832 * 17 16 15 42 42 H 1.09001 * 108.94903 * 198.75165 * 17 16 15 43 43 H 0.97006 * 120.00064 * 180.02562 * 22 21 19 44 44 H 1.08991 * 109.62209 * 330.84878 * 27 18 17 45 45 H 1.08999 * 109.32704 * 210.89588 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1932 0.0000 4 6 3.5839 1.1945 0.0062 5 9 4.2557 2.3666 0.0127 6 6 4.2834 -0.0028 0.0001 7 6 3.6031 -1.2013 -0.0057 8 6 2.2063 -1.2085 -0.0057 9 6 1.4717 -2.4901 -0.0113 10 8 0.2620 -2.4977 0.1077 11 7 2.1427 -3.6509 -0.1481 12 6 1.4142 -4.9219 -0.1530 13 1 0.4505 -4.7834 -0.6431 14 6 2.1949 -5.9277 -0.8896 15 6 1.5045 -7.2811 -1.0283 16 6 1.7754 -8.1093 0.2034 17 6 0.6589 -7.8945 1.2413 18 7 0.2395 -6.4816 1.3228 19 6 -1.0968 -6.1981 1.4180 20 1 -1.4927 -5.3026 0.9621 21 6 -1.9427 -7.0615 2.1005 22 7 -1.4400 -8.0257 2.8421 23 14 -3.7944 -6.8550 1.9664 24 1 -4.2068 -6.9964 0.5469 25 1 -4.4690 -7.8956 2.7833 26 1 -4.1796 -5.5092 2.4621 27 6 1.1851 -5.3871 1.3063 28 1 -0.3633 -0.1322 1.0192 29 1 -0.3634 -0.8164 -0.6240 30 1 -0.3633 0.9488 -0.3950 31 1 1.6575 2.1285 -0.0004 32 1 5.3634 0.0039 0.0001 33 1 4.1489 -2.1332 -0.0109 34 1 3.1081 -3.6448 -0.2426 35 1 2.4032 -5.5414 -1.8874 36 1 3.1429 -6.0766 -0.3725 37 1 0.4303 -7.1319 -1.1373 38 1 1.8911 -7.7982 -1.9066 39 1 1.8156 -9.1634 -0.0714 40 1 2.7306 -7.8119 0.6360 41 1 -0.2020 -8.5039 0.9663 42 1 1.0186 -8.2139 2.2194 43 1 -2.0311 -8.6294 3.3188 44 1 2.1318 -5.7147 1.7356 45 1 0.7883 -4.5587 1.8931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034494271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:03 Heat of formation + Delta-G solvation = -37.450584 kcal Electronic energy + Delta-G solvation = -27347.300488 eV Core-core repulsion = 23472.559095 eV Total energy + Delta-G solvation = -3874.741394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.20568 -40.39712 -38.67011 -37.38576 -34.72227 -33.38589 -32.67257 -31.48279 -30.78623 -29.67909 -27.29498 -25.95353 -24.43401 -23.74279 -23.03062 -21.92424 -20.44737 -20.11560 -19.16643 -17.76479 -17.34355 -16.76817 -16.54966 -15.92759 -15.73109 -15.19161 -15.04530 -14.53592 -14.46018 -14.01213 -13.71448 -13.58088 -13.40867 -13.21326 -13.04599 -12.90031 -12.58309 -12.51541 -12.10226 -12.00953 -11.92169 -11.49904 -11.28026 -11.04055 -10.86581 -10.74716 -10.59795 -10.15010 -10.12400 -9.73861 -9.62890 -9.55680 -9.41853 -9.21785 -8.97973 -8.70877 -8.32628 -6.51153 -5.72648 -3.24132 0.53569 0.94845 2.79577 3.34353 3.44341 3.48083 3.51768 3.65430 3.89534 4.38075 4.52431 4.55957 4.71813 4.83138 5.05262 5.24366 5.35749 5.44107 5.45799 5.53533 5.53895 5.60453 5.74376 5.79366 5.83374 5.86627 5.99208 6.03254 6.12356 6.15519 6.29892 6.38707 6.39765 6.58697 6.59489 6.62553 6.73955 6.77327 6.84367 6.93525 7.12492 7.43913 7.71456 7.77387 7.93941 8.48892 8.58653 9.31532 9.94110 10.42071 11.34453 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.003426 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.863327 B = 8169.943213 C = 9387.916648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.007 3.993 3 C -0.167 4.167 4 C 0.121 3.879 5 F -0.138 7.138 6 C -0.171 4.171 7 C -0.054 4.054 8 C -0.143 4.143 9 C 0.551 3.449 10 O -0.517 6.517 11 N -0.718 5.718 12 C 0.114 3.886 13 H 0.089 0.911 14 C -0.112 4.112 15 C -0.100 4.100 16 C -0.143 4.143 17 C 0.178 3.822 18 N -0.582 5.582 19 C -0.260 4.260 20 H 0.066 0.934 21 C 0.011 3.989 22 N -0.905 5.905 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.158 3.842 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.390 0.610 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.026 0.974 43 H 0.253 0.747 44 H 0.030 0.970 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.710 12.680 -7.900 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.006 3.994 3 C -0.186 4.186 4 C 0.102 3.898 5 F -0.117 7.117 6 C -0.189 4.189 7 C -0.073 4.073 8 C -0.147 4.147 9 C 0.338 3.662 10 O -0.394 6.394 11 N -0.369 5.369 12 C 0.008 3.992 13 H 0.107 0.893 14 C -0.150 4.150 15 C -0.139 4.139 16 C -0.182 4.182 17 C 0.053 3.947 18 N -0.302 5.302 19 C -0.390 4.390 20 H 0.084 0.916 21 C -0.188 4.188 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.029 3.971 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.224 0.776 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.763 12.526 -7.683 18.823 hybrid contribution -0.116 0.321 -0.023 0.342 sum 11.648 12.847 -7.707 18.976 Atomic orbital electron populations 1.21148 0.89026 1.03216 1.04564 1.19928 0.97389 0.90465 0.91662 1.21032 0.92096 0.99393 1.06089 1.17912 0.90191 0.81216 1.00499 1.91510 1.80514 1.46039 1.93594 1.21013 1.00992 0.90958 1.05969 1.21165 0.92946 0.97941 0.95244 1.20061 0.93503 0.94088 1.07038 1.18038 0.87327 0.83373 0.77504 1.90801 1.13387 1.86759 1.48423 1.46114 1.10282 1.06442 1.74021 1.21297 0.95679 0.80518 1.01700 0.89272 1.20584 0.99122 0.96273 0.99043 1.20825 1.02138 0.93765 0.97123 1.22082 1.00384 0.98511 0.97270 1.21004 0.94463 0.85239 0.94037 1.43510 1.02510 0.99795 1.84429 1.19194 0.83369 1.08340 1.28102 0.91647 1.25193 0.98305 0.99029 0.96296 1.70023 1.33718 1.19794 1.31290 0.86396 0.85623 0.77334 0.77555 1.20949 1.21749 1.20743 1.20937 0.92853 0.91792 0.91557 0.89867 0.87977 0.92347 0.84200 0.84282 0.84554 0.77643 0.93428 0.92854 0.90459 0.93406 0.92934 0.93646 0.91492 0.95557 0.93697 0.95164 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 8.70 36.01 0.31 -1.21 16 2 C 0.01 0.08 5.91 -104.24 -0.62 -0.54 16 3 C -0.17 -1.74 9.64 -39.57 -0.38 -2.12 16 4 C 0.12 1.24 7.31 -39.27 -0.29 0.95 16 5 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 6 C -0.17 -1.54 10.01 -39.58 -0.40 -1.94 16 7 C -0.05 -0.52 9.52 -39.20 -0.37 -0.89 16 8 C -0.14 -1.79 5.87 -104.97 -0.62 -2.41 16 9 C 0.55 8.55 7.65 -12.39 -0.09 8.45 16 10 O -0.52 -10.02 13.01 5.31 0.07 -9.95 16 11 N -0.72 -10.07 5.01 -56.61 -0.28 -10.35 16 12 C 0.11 1.98 2.34 -69.78 -0.16 1.82 16 13 H 0.09 1.86 7.57 -51.93 -0.39 1.47 16 14 C -0.11 -1.67 4.55 -29.79 -0.14 -1.80 16 15 C -0.10 -1.66 5.51 -28.02 -0.15 -1.81 16 16 C -0.14 -2.56 5.70 -27.30 -0.16 -2.72 16 17 C 0.18 4.12 4.65 -2.94 -0.01 4.11 16 18 N -0.58 -14.26 2.24 -172.03 -0.39 -14.65 16 19 C -0.26 -7.19 9.38 -15.06 -0.14 -7.34 16 20 H 0.07 1.86 7.85 -52.48 -0.41 1.45 16 21 C 0.01 0.30 4.94 -17.43 -0.09 0.22 16 22 N -0.90 -26.26 11.25 55.49 0.62 -25.64 16 23 Si 0.90 22.21 29.57 -169.99 -5.03 17.18 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.16 3.33 5.24 -4.04 -0.02 3.30 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.49 5.90 -51.93 -0.31 1.19 16 30 H 0.06 0.57 8.03 -51.93 -0.42 0.15 16 31 H 0.14 1.18 8.05 -52.49 -0.42 0.76 16 32 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.14 0.95 6.45 -52.48 -0.34 0.62 16 34 H 0.39 4.07 6.65 -40.82 -0.27 3.80 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.72 7.34 -51.93 -0.38 0.34 16 37 H 0.08 1.51 7.48 -51.93 -0.39 1.12 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.76 7.31 -51.93 -0.38 0.38 16 41 H 0.07 1.73 6.73 -51.93 -0.35 1.38 16 42 H 0.03 0.67 7.97 -51.93 -0.41 0.26 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.03 0.60 8.05 -51.93 -0.42 0.18 16 45 H 0.05 1.15 7.97 -51.93 -0.41 0.74 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -31.00 358.87 -9.43 -40.43 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.55 Total: 2.89 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -3.32 Total: -3.92 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.05 Total: -50.64 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.00 -9.43 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034494271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.981 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds