Wall clock time and date at job start Tue Mar 31 2020 12:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37858 * 120.05770 * 2 1 4 4 C 1.38641 * 120.11302 * 179.70292 * 3 2 1 5 5 F 1.35101 * 119.87648 * 180.31853 * 4 3 2 6 6 C 1.38670 * 120.23823 * 0.59345 * 4 3 2 7 7 C 1.37813 * 120.12381 * 359.68319 * 6 4 3 8 8 C 1.39625 * 120.05637 * 180.27244 * 2 1 3 9 9 C 1.47721 * 120.12432 * 359.97438 * 8 2 1 10 10 O 1.21564 * 119.99518 * 353.53739 * 9 8 2 11 11 N 1.34772 * 120.00464 * 173.53955 * 9 8 2 12 12 C 1.46498 * 120.00277 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.32349 * 34.99928 * 12 11 9 14 14 C 1.47095 * 109.33109 * 154.65052 * 12 11 9 15 15 C 1.52559 * 114.32835 * 183.05988 * 14 12 11 16 16 C 1.50882 * 109.35913 * 274.98803 * 15 14 12 17 17 C 1.53944 * 110.09844 * 91.88900 * 16 15 14 18 18 N 1.47605 * 112.13629 * 319.43639 * 17 16 15 19 19 C 1.36943 * 118.63688 * 137.87021 * 18 17 16 20 20 H 1.08003 * 119.99892 * 213.35951 * 19 18 17 21 21 C 1.38808 * 120.00349 * 33.36413 * 19 18 17 22 22 N 1.31617 * 120.00013 * 11.38342 * 21 19 18 23 23 Si 1.86806 * 119.99807 * 191.38533 * 21 19 18 24 24 H 1.48501 * 109.47111 * 60.00145 * 23 21 19 25 25 H 1.48500 * 109.46917 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47157 * 299.99581 * 23 21 19 27 27 C 1.44651 * 122.54602 * 317.85339 * 18 17 16 28 28 H 1.09003 * 109.46922 * 262.60915 * 1 2 3 29 29 H 1.08997 * 109.47511 * 142.60682 * 1 2 3 30 30 H 1.09004 * 109.46973 * 22.60099 * 1 2 3 31 31 H 1.07994 * 119.94300 * 359.97438 * 3 2 1 32 32 H 1.08005 * 119.94094 * 179.70470 * 6 4 3 33 33 H 1.08003 * 120.06343 * 179.97438 * 7 6 4 34 34 H 0.96998 * 119.99677 * 0.02562 * 11 9 8 35 35 H 1.09003 * 108.50901 * 304.31911 * 14 12 11 36 36 H 1.09005 * 108.50707 * 61.96342 * 14 12 11 37 37 H 1.09004 * 109.49121 * 34.95244 * 15 14 12 38 38 H 1.09002 * 109.49100 * 155.01762 * 15 14 12 39 39 H 1.09006 * 109.36544 * 212.08464 * 16 15 14 40 40 H 1.09000 * 109.36223 * 331.82309 * 16 15 14 41 41 H 1.08999 * 108.94679 * 80.11832 * 17 16 15 42 42 H 1.09001 * 108.94903 * 198.75165 * 17 16 15 43 43 H 0.97006 * 120.00064 * 180.02562 * 22 21 19 44 44 H 1.08991 * 109.62209 * 330.84878 * 27 18 17 45 45 H 1.08999 * 109.32704 * 210.89588 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1932 0.0000 4 6 3.5839 1.1945 0.0062 5 9 4.2557 2.3666 0.0127 6 6 4.2834 -0.0028 0.0001 7 6 3.6031 -1.2013 -0.0057 8 6 2.2063 -1.2085 -0.0057 9 6 1.4717 -2.4901 -0.0113 10 8 0.2620 -2.4977 0.1077 11 7 2.1427 -3.6509 -0.1481 12 6 1.4142 -4.9219 -0.1530 13 1 0.4505 -4.7834 -0.6431 14 6 2.1949 -5.9277 -0.8896 15 6 1.5045 -7.2811 -1.0283 16 6 1.7754 -8.1093 0.2034 17 6 0.6589 -7.8945 1.2413 18 7 0.2395 -6.4816 1.3228 19 6 -1.0968 -6.1981 1.4180 20 1 -1.4927 -5.3026 0.9621 21 6 -1.9427 -7.0615 2.1005 22 7 -1.4400 -8.0257 2.8421 23 14 -3.7944 -6.8550 1.9664 24 1 -4.2068 -6.9964 0.5469 25 1 -4.4690 -7.8956 2.7833 26 1 -4.1796 -5.5092 2.4621 27 6 1.1851 -5.3871 1.3063 28 1 -0.3633 -0.1322 1.0192 29 1 -0.3634 -0.8164 -0.6240 30 1 -0.3633 0.9488 -0.3950 31 1 1.6575 2.1285 -0.0004 32 1 5.3634 0.0039 0.0001 33 1 4.1489 -2.1332 -0.0109 34 1 3.1081 -3.6448 -0.2426 35 1 2.4032 -5.5414 -1.8874 36 1 3.1429 -6.0766 -0.3725 37 1 0.4303 -7.1319 -1.1373 38 1 1.8911 -7.7982 -1.9066 39 1 1.8156 -9.1634 -0.0714 40 1 2.7306 -7.8119 0.6360 41 1 -0.2020 -8.5039 0.9663 42 1 1.0186 -8.2139 2.2194 43 1 -2.0311 -8.6294 3.3188 44 1 2.1318 -5.7147 1.7356 45 1 0.7883 -4.5587 1.8931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034494271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:02 Heat of formation + Delta-G solvation = -55.340657 kcal Electronic energy + Delta-G solvation = -27348.076260 eV Core-core repulsion = 23472.559095 eV Total energy + Delta-G solvation = -3875.517166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.00182 -41.51816 -39.88924 -38.73485 -36.28354 -34.94495 -33.63627 -32.90345 -32.46746 -30.89984 -28.27924 -27.79915 -25.92749 -25.11521 -24.38577 -22.90042 -21.68383 -21.47957 -20.82360 -18.78225 -18.56298 -18.19747 -17.79234 -17.12954 -16.73320 -16.51397 -16.43203 -16.04816 -15.84716 -15.41047 -15.10015 -14.67521 -14.57842 -14.32894 -14.27508 -14.07749 -14.02483 -13.79031 -13.74081 -13.13259 -13.01414 -12.95729 -12.81224 -12.76737 -12.48801 -12.27989 -12.07654 -12.04965 -11.60269 -11.45960 -11.34197 -11.11476 -10.71104 -10.52454 -10.15062 -10.02181 -9.70525 -8.53176 -7.86828 -5.41197 -0.35263 0.16838 1.42217 1.43618 1.51053 1.77519 2.15057 2.50510 2.66964 3.10064 3.26459 3.61999 3.63971 3.76262 3.80789 3.94674 4.08610 4.14051 4.21656 4.30641 4.44191 4.53327 4.59593 4.71427 4.73786 4.78053 4.78596 4.80295 5.00620 5.02821 5.06620 5.07326 5.14764 5.21507 5.25737 5.28390 5.36932 5.43079 5.51806 5.64676 5.69288 5.72640 5.76800 5.81341 6.44140 6.64071 7.20281 7.33896 7.94300 8.32710 9.16088 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.003426 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.863327 B = 8169.943213 C = 9387.916648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.009 4.009 3 C -0.167 4.167 4 C 0.119 3.881 5 F -0.138 7.138 6 C -0.160 4.160 7 C -0.043 4.043 8 C -0.162 4.162 9 C 0.547 3.453 10 O -0.567 6.567 11 N -0.703 5.703 12 C 0.136 3.864 13 H 0.047 0.953 14 C -0.109 4.109 15 C -0.098 4.098 16 C -0.130 4.130 17 C 0.186 3.814 18 N -0.595 5.595 19 C -0.266 4.266 20 H 0.046 0.954 21 C -0.037 4.037 22 N -0.930 5.930 23 Si 0.958 3.042 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.283 1.283 27 C 0.160 3.840 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.412 0.588 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.030 0.970 42 H -0.004 1.004 43 H 0.250 0.750 44 H 0.049 0.951 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.017 13.553 -9.377 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.010 4.010 3 C -0.185 4.185 4 C 0.100 3.900 5 F -0.116 7.116 6 C -0.179 4.179 7 C -0.062 4.062 8 C -0.166 4.166 9 C 0.335 3.665 10 O -0.447 6.447 11 N -0.356 5.356 12 C 0.029 3.971 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.136 4.136 16 C -0.169 4.169 17 C 0.061 3.939 18 N -0.317 5.317 19 C -0.397 4.397 20 H 0.064 0.936 21 C -0.233 4.233 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.209 1.209 27 C 0.031 3.969 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.174 0.826 32 H 0.189 0.811 33 H 0.185 0.815 34 H 0.251 0.749 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.014 0.986 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 15.136 13.421 -9.184 22.216 hybrid contribution -1.090 0.155 0.461 1.194 sum 14.046 13.576 -8.723 21.394 Atomic orbital electron populations 1.21011 0.90048 1.03354 1.03086 1.19939 0.96987 0.91238 0.92858 1.21130 0.92569 0.99289 1.05535 1.18087 0.90156 0.81715 1.00086 1.91517 1.80408 1.46183 1.93530 1.21347 1.02525 0.89924 1.04055 1.21430 0.91430 0.99650 0.93652 1.19914 0.94826 0.92336 1.09474 1.18609 0.86959 0.84669 0.76244 1.90794 1.15802 1.87551 1.50550 1.45839 1.11272 1.04934 1.73505 1.20710 0.95158 0.82712 0.98571 0.93494 1.20529 0.99235 0.94427 1.00516 1.20807 1.00137 0.94943 0.97735 1.21939 0.98644 1.00167 0.96139 1.20819 0.94891 0.83816 0.94360 1.43648 1.02038 1.01135 1.84928 1.19252 0.85372 1.07638 1.27417 0.93610 1.25817 1.02011 0.99099 0.96422 1.70157 1.34657 1.20467 1.32207 0.85503 0.81207 0.77035 0.77660 1.20354 1.21242 1.20885 1.21009 0.92409 0.89637 0.93823 0.91553 0.90784 0.89912 0.82608 0.81123 0.81510 0.74940 0.90551 0.89957 0.94316 0.89839 0.91092 0.91446 0.95128 0.98589 0.94054 0.93301 0.96894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 8.70 71.24 0.62 -2.46 16 2 C -0.01 -0.21 5.91 -19.62 -0.12 -0.33 16 3 C -0.17 -3.16 9.64 22.28 0.21 -2.94 16 4 C 0.12 2.08 7.31 22.47 0.16 2.24 16 5 F -0.14 -2.47 17.26 44.97 0.78 -1.69 16 6 C -0.16 -2.24 10.01 22.27 0.22 -2.02 16 7 C -0.04 -0.68 9.52 22.52 0.21 -0.46 16 8 C -0.16 -3.88 5.87 -20.09 -0.12 -3.99 16 9 C 0.55 17.13 7.65 86.75 0.66 17.79 16 10 O -0.57 -23.47 13.01 -3.92 -0.05 -23.52 16 11 N -0.70 -18.76 5.01 -451.28 -2.26 -21.02 16 12 C 0.14 4.66 2.34 43.79 0.10 4.76 16 13 H 0.05 2.04 7.57 -2.38 -0.02 2.02 16 14 C -0.11 -2.90 4.55 28.61 0.13 -2.77 16 15 C -0.10 -3.02 5.51 29.76 0.16 -2.85 16 16 C -0.13 -4.40 5.70 30.22 0.17 -4.22 16 17 C 0.19 8.87 4.65 86.49 0.40 9.27 16 18 N -0.60 -30.38 2.24 -698.19 -1.57 -31.94 16 19 C -0.27 -15.52 9.38 84.03 0.79 -14.73 16 20 H 0.05 2.80 7.85 -2.91 -0.02 2.78 16 21 C -0.04 -2.18 4.94 84.86 0.42 -1.76 16 22 N -0.93 -56.17 11.25 21.65 0.24 -55.93 16 23 Si 0.96 47.43 29.57 68.60 2.03 49.46 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 27 C 0.16 6.84 5.24 87.36 0.46 7.30 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 2.35 5.90 -2.39 -0.01 2.34 16 30 H 0.08 1.63 8.03 -2.38 -0.02 1.61 16 31 H 0.16 2.34 8.05 -2.91 -0.02 2.32 16 32 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 33 H 0.17 1.50 6.45 -2.91 -0.02 1.49 16 34 H 0.41 7.13 6.65 -92.71 -0.62 6.51 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.79 7.34 -2.38 -0.02 1.77 16 37 H 0.04 1.50 7.48 -2.38 -0.02 1.49 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.07 2.01 7.31 -2.39 -0.02 1.99 16 41 H 0.03 1.64 6.73 -2.39 -0.02 1.63 16 42 H 0.00 -0.21 7.97 -2.39 -0.02 -0.23 16 43 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 44 H 0.05 1.89 8.05 -2.39 -0.02 1.87 16 45 H 0.01 0.63 7.97 -2.39 -0.02 0.61 16 Total: -1.00 -73.92 358.87 4.06 -69.85 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.39 Total: 11.98 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 4.50 Total: 2.82 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -3.58 Total: -108.89 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -73.92 4.06 -69.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034494271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.510 kcal (2) G-P(sol) polarization free energy of solvation -73.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds