Wall clock time and date at job start Tue Mar 31 2020 12:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37875 * 119.97754 * 2 1 4 4 C 1.39384 * 119.95479 * 179.97438 * 3 2 1 5 5 C 1.48344 * 120.04367 * 180.02562 * 4 3 2 6 6 C 1.39361 * 120.12478 * 359.72868 * 5 4 3 7 7 C 1.38014 * 119.87219 * 179.73946 * 6 5 4 8 8 C 1.38326 * 120.12569 * 0.53526 * 7 6 5 9 9 C 1.38325 * 120.24684 * 359.71550 * 8 7 6 10 10 C 1.38010 * 120.12697 * 0.02640 * 9 8 7 11 11 C 1.39426 * 119.90825 * 359.97438 * 4 3 2 12 12 C 1.37828 * 119.95163 * 359.97438 * 11 4 3 13 13 C 1.38996 * 119.97933 * 179.72144 * 2 1 3 14 14 N 1.39571 * 119.95166 * 359.97438 * 13 2 1 15 15 C 1.46496 * 120.00089 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47132 * 179.97438 * 15 14 13 17 17 H 1.08994 * 109.46903 * 305.00045 * 16 15 14 18 18 C 1.47197 * 109.46897 * 65.00024 * 16 15 14 19 19 N 5.55914 * 73.00515 * 204.48902 * 2 1 3 20 20 C 1.53005 * 109.46923 * 184.99887 * 16 15 14 21 21 C 1.50695 * 109.46919 * 174.99786 * 20 16 15 22 22 H 1.08001 * 120.00151 * 0.02562 * 21 20 16 23 23 C 1.37878 * 120.00022 * 179.97438 * 21 20 16 24 24 N 1.31509 * 119.99896 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00073 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47256 * 60.00421 * 25 23 21 27 27 H 1.48498 * 109.47133 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47092 * 300.00380 * 25 23 21 29 29 H 1.09002 * 109.47152 * 90.00246 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00346 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00327 * 1 2 3 32 32 H 1.08005 * 120.02308 * 359.97308 * 3 2 1 33 33 H 1.07996 * 120.06124 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.93717 * 180.24730 * 7 6 5 35 35 H 1.07994 * 119.87905 * 179.74179 * 8 7 6 36 36 H 1.07996 * 119.93945 * 180.02562 * 9 8 7 37 37 H 1.07995 * 120.06770 * 179.97438 * 10 9 8 38 38 H 1.08000 * 120.02167 * 180.02562 * 11 4 3 39 39 H 1.08002 * 119.97651 * 180.02562 * 12 11 4 40 40 H 0.97002 * 120.00053 * 359.97438 * 14 13 2 41 41 H 1.09000 * 109.47111 * 299.99647 * 15 14 13 42 42 H 1.09007 * 109.46897 * 59.99471 * 15 14 13 43 43 H 1.08996 * 109.47238 * 295.00053 * 20 16 15 44 44 H 1.08997 * 109.46837 * 55.00150 * 20 16 15 45 45 H 0.97002 * 120.00227 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1943 0.0000 4 6 3.5898 1.1937 0.0005 5 6 4.3330 2.4776 0.0011 6 6 3.6402 3.6868 -0.0046 7 6 4.3369 4.8782 0.0014 8 6 5.7202 4.8736 0.0019 9 6 6.4129 3.6763 0.0023 10 6 5.7267 2.4789 0.0017 11 6 4.2845 -0.0151 0.0016 12 6 3.5920 -1.2068 0.0027 13 6 2.2016 -1.2040 0.0059 14 7 1.5023 -2.4118 0.0123 15 6 2.2332 -3.6814 0.0179 16 6 1.2375 -4.8431 0.0249 17 1 0.5546 -4.7311 0.8669 18 6 0.4715 -4.8403 -1.2320 19 7 -0.1178 -4.8381 -2.2037 20 6 1.9970 -6.1649 0.1565 21 6 1.0130 -7.2987 0.2870 22 1 -0.0480 -7.0969 0.2766 23 6 1.4670 -8.5939 0.4184 24 7 2.7589 -8.8397 0.4305 25 14 0.2473 -9.9995 0.5795 26 1 -0.6190 -10.0437 -0.6259 27 1 0.9843 -11.2823 0.7073 28 1 -0.5933 -9.7897 1.7856 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.6559 2.1297 -0.0004 33 1 2.5603 3.6916 -0.0099 34 1 3.8011 5.8159 0.0010 35 1 6.2613 5.8081 0.0024 36 1 7.4929 3.6785 0.0031 37 1 6.2685 1.5447 0.0016 38 1 5.3645 -0.0177 0.0025 39 1 4.1297 -2.1434 0.0039 40 1 0.5322 -2.4107 0.0130 41 1 2.8590 -3.7443 -0.8723 42 1 2.8606 -3.7355 0.9077 43 1 2.6138 -6.3191 -0.7288 44 1 2.6328 -6.1320 1.0412 45 1 3.0784 -9.7509 0.5234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569095708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:47 Heat of formation + Delta-G solvation = 58.641664 kcal Electronic energy + Delta-G solvation = -24480.707442 eV Core-core repulsion = 21040.902145 eV Total energy + Delta-G solvation = -3439.805296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.158 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.12337 -38.89376 -37.22514 -35.26011 -33.87153 -32.99937 -32.07970 -31.15744 -31.03810 -28.38167 -27.14282 -26.24035 -24.12155 -23.03908 -22.71002 -21.98198 -20.96673 -20.28458 -17.79844 -17.28419 -16.66067 -16.62861 -15.89403 -15.77778 -14.86273 -14.66439 -14.39939 -14.24447 -14.05870 -13.83460 -13.76419 -13.46111 -13.11975 -13.07672 -12.98375 -12.85199 -12.49403 -12.33310 -12.13912 -11.87864 -11.81874 -11.47454 -11.41497 -11.17503 -11.10356 -10.87494 -10.67699 -10.63113 -10.47336 -10.24911 -9.73142 -9.37602 -9.11658 -8.89637 -8.73779 -8.53726 -7.09504 -6.18071 -4.22271 0.74957 1.24355 1.44487 1.98365 3.25361 3.30361 3.32455 3.39392 3.44744 3.55892 3.57187 4.07026 4.33592 4.56247 4.60102 4.61251 4.77871 4.83422 4.93395 4.95085 5.16032 5.20088 5.20628 5.24386 5.29280 5.41757 5.53028 5.56212 5.59681 5.64155 5.78689 5.83041 5.89518 5.90693 6.11714 6.15296 6.18619 6.22802 6.29806 6.34961 6.41717 6.49267 6.75969 6.82925 6.86699 7.29431 7.35560 7.38586 7.73434 7.75545 8.11323 8.25948 8.81354 9.43772 10.92585 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.002120 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.619345 B =13205.216502 C =13970.191226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.167 4.167 3 C -0.057 4.057 4 C -0.121 4.121 5 C -0.017 4.017 6 C -0.124 4.124 7 C -0.116 4.116 8 C -0.135 4.135 9 C -0.115 4.115 10 C -0.123 4.123 11 C -0.059 4.059 12 C -0.194 4.194 13 C 0.233 3.767 14 N -0.742 5.742 15 C 0.128 3.872 16 C -0.002 4.002 17 H 0.108 0.892 18 C 0.236 3.764 19 N -0.465 5.465 20 C 0.035 3.965 21 C -0.531 4.531 22 H 0.056 0.944 23 C 0.064 3.936 24 N -0.889 5.889 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.275 1.275 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.399 0.601 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.029 0.971 44 H 0.042 0.958 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 25.031 2.338 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.172 4.172 3 C -0.076 4.076 4 C -0.124 4.124 5 C -0.017 4.017 6 C -0.142 4.142 7 C -0.134 4.134 8 C -0.153 4.153 9 C -0.133 4.133 10 C -0.141 4.141 11 C -0.078 4.078 12 C -0.217 4.217 13 C 0.128 3.872 14 N -0.370 5.370 15 C 0.003 3.997 16 C -0.025 4.025 17 H 0.126 0.874 18 C -0.081 4.081 19 N -0.142 5.142 20 C -0.004 4.004 21 C -0.569 4.569 22 H 0.075 0.925 23 C -0.139 4.139 24 N -0.527 5.527 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.200 1.200 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.235 0.765 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.890 24.666 0.884 24.986 hybrid contribution -0.714 -0.989 0.431 1.293 sum 3.176 23.677 1.314 23.925 Atomic orbital electron populations 1.20592 0.91389 1.02315 1.01946 1.19259 0.95716 0.91594 1.10621 1.20761 0.92904 0.96729 0.97183 1.18415 0.92746 0.91719 1.09480 1.18808 0.92874 0.92283 0.97762 1.21214 0.99881 0.91791 1.01324 1.21057 0.94384 0.97809 1.00125 1.21131 0.94417 0.97947 1.01797 1.21071 0.99777 0.92464 0.99980 1.21245 0.93501 0.98268 1.01085 1.20921 0.99308 0.91114 0.96410 1.20631 0.92027 0.98771 1.10251 1.17766 0.91376 0.85631 0.92453 1.45051 1.08484 1.02866 1.80616 1.21590 0.94584 0.80878 1.02642 1.19480 0.95693 0.98825 0.88453 0.87449 1.29130 0.92991 0.91423 0.94531 1.81070 1.10668 1.10386 1.12030 1.19149 0.95371 0.86856 0.99021 1.21050 0.92792 0.91472 1.51591 0.92543 1.24947 0.95211 0.98926 0.94800 1.69915 1.12638 1.20853 1.49327 0.86630 0.81168 0.81335 0.78810 1.20240 1.21106 1.20012 0.91702 0.91609 0.92109 0.86183 0.85982 0.86255 0.86420 0.86174 0.85798 0.86018 0.85397 0.76461 0.91437 0.89965 0.95308 0.93956 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.57 36.01 0.34 -0.69 16 2 C -0.17 -1.96 5.89 -104.47 -0.62 -2.58 16 3 C -0.06 -0.64 9.07 -39.29 -0.36 -0.99 16 4 C -0.12 -1.40 5.88 -104.87 -0.62 -2.02 16 5 C -0.02 -0.19 5.88 -104.90 -0.62 -0.80 16 6 C -0.12 -1.19 9.43 -39.25 -0.37 -1.56 16 7 C -0.12 -0.98 10.03 -39.63 -0.40 -1.38 16 8 C -0.13 -1.11 10.04 -39.52 -0.40 -1.51 16 9 C -0.11 -0.99 10.03 -39.63 -0.40 -1.39 16 10 C -0.12 -1.20 9.43 -39.24 -0.37 -1.57 16 11 C -0.06 -0.67 9.42 -39.29 -0.37 -1.04 16 12 C -0.19 -2.38 9.29 -39.43 -0.37 -2.75 16 13 C 0.23 2.97 6.63 -83.76 -0.56 2.41 16 14 N -0.74 -9.42 5.41 -58.60 -0.32 -9.73 16 15 C 0.13 1.75 4.27 -4.04 -0.02 1.73 16 16 C 0.00 -0.04 2.26 -93.41 -0.21 -0.25 16 17 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 18 C 0.24 4.53 13.45 -20.75 -0.28 4.26 16 19 N -0.46 -9.82 18.54 42.17 0.78 -9.04 16 20 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 21 C -0.53 -13.57 8.60 -34.44 -0.30 -13.87 16 22 H 0.06 1.43 7.59 -52.49 -0.40 1.03 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 25 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.06 0.58 6.52 -51.93 -0.34 0.24 16 32 H 0.12 1.10 6.20 -52.48 -0.33 0.77 16 33 H 0.12 0.99 6.20 -52.49 -0.33 0.67 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 1.04 6.20 -52.49 -0.33 0.71 16 38 H 0.12 1.15 6.20 -52.49 -0.33 0.82 16 39 H 0.13 1.47 6.71 -52.49 -0.35 1.11 16 40 H 0.40 4.85 6.18 -40.82 -0.25 4.60 16 41 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 42 H 0.08 1.03 7.95 -51.93 -0.41 0.62 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -29.91 377.97 -10.21 -40.12 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.98 Total: 2.96 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -6.11 Total: -21.77 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 1.20 Total: -42.78 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.91 -10.21 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569095708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.763 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds