Wall clock time and date at job start Tue Mar 31 2020 12:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37875 * 119.97754 * 2 1 4 4 C 1.39384 * 119.95479 * 179.97438 * 3 2 1 5 5 C 1.48344 * 120.04367 * 180.02562 * 4 3 2 6 6 C 1.39361 * 120.12478 * 359.72868 * 5 4 3 7 7 C 1.38014 * 119.87219 * 179.73946 * 6 5 4 8 8 C 1.38326 * 120.12569 * 0.53526 * 7 6 5 9 9 C 1.38325 * 120.24684 * 359.71550 * 8 7 6 10 10 C 1.38010 * 120.12697 * 0.02640 * 9 8 7 11 11 C 1.39426 * 119.90825 * 359.97438 * 4 3 2 12 12 C 1.37828 * 119.95163 * 359.97438 * 11 4 3 13 13 C 1.38996 * 119.97933 * 179.72144 * 2 1 3 14 14 N 1.39571 * 119.95166 * 359.97438 * 13 2 1 15 15 C 1.46496 * 120.00089 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47132 * 179.97438 * 15 14 13 17 17 H 1.08994 * 109.46903 * 305.00045 * 16 15 14 18 18 C 1.47197 * 109.46897 * 65.00024 * 16 15 14 19 19 N 5.55914 * 73.00515 * 204.48902 * 2 1 3 20 20 C 1.53005 * 109.46923 * 184.99887 * 16 15 14 21 21 C 1.50695 * 109.46919 * 174.99786 * 20 16 15 22 22 H 1.08001 * 120.00151 * 0.02562 * 21 20 16 23 23 C 1.37878 * 120.00022 * 179.97438 * 21 20 16 24 24 N 1.31509 * 119.99896 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00073 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47256 * 60.00421 * 25 23 21 27 27 H 1.48498 * 109.47133 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47092 * 300.00380 * 25 23 21 29 29 H 1.09002 * 109.47152 * 90.00246 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00346 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00327 * 1 2 3 32 32 H 1.08005 * 120.02308 * 359.97308 * 3 2 1 33 33 H 1.07996 * 120.06124 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.93717 * 180.24730 * 7 6 5 35 35 H 1.07994 * 119.87905 * 179.74179 * 8 7 6 36 36 H 1.07996 * 119.93945 * 180.02562 * 9 8 7 37 37 H 1.07995 * 120.06770 * 179.97438 * 10 9 8 38 38 H 1.08000 * 120.02167 * 180.02562 * 11 4 3 39 39 H 1.08002 * 119.97651 * 180.02562 * 12 11 4 40 40 H 0.97002 * 120.00053 * 359.97438 * 14 13 2 41 41 H 1.09000 * 109.47111 * 299.99647 * 15 14 13 42 42 H 1.09007 * 109.46897 * 59.99471 * 15 14 13 43 43 H 1.08996 * 109.47238 * 295.00053 * 20 16 15 44 44 H 1.08997 * 109.46837 * 55.00150 * 20 16 15 45 45 H 0.97002 * 120.00227 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1943 0.0000 4 6 3.5898 1.1937 0.0005 5 6 4.3330 2.4776 0.0011 6 6 3.6402 3.6868 -0.0046 7 6 4.3369 4.8782 0.0014 8 6 5.7202 4.8736 0.0019 9 6 6.4129 3.6763 0.0023 10 6 5.7267 2.4789 0.0017 11 6 4.2845 -0.0151 0.0016 12 6 3.5920 -1.2068 0.0027 13 6 2.2016 -1.2040 0.0059 14 7 1.5023 -2.4118 0.0123 15 6 2.2332 -3.6814 0.0179 16 6 1.2375 -4.8431 0.0249 17 1 0.5546 -4.7311 0.8669 18 6 0.4715 -4.8403 -1.2320 19 7 -0.1178 -4.8381 -2.2037 20 6 1.9970 -6.1649 0.1565 21 6 1.0130 -7.2987 0.2870 22 1 -0.0480 -7.0969 0.2766 23 6 1.4670 -8.5939 0.4184 24 7 2.7589 -8.8397 0.4305 25 14 0.2473 -9.9995 0.5795 26 1 -0.6190 -10.0437 -0.6259 27 1 0.9843 -11.2823 0.7073 28 1 -0.5933 -9.7897 1.7856 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.6559 2.1297 -0.0004 33 1 2.5603 3.6916 -0.0099 34 1 3.8011 5.8159 0.0010 35 1 6.2613 5.8081 0.0024 36 1 7.4929 3.6785 0.0031 37 1 6.2685 1.5447 0.0016 38 1 5.3645 -0.0177 0.0025 39 1 4.1297 -2.1434 0.0039 40 1 0.5322 -2.4107 0.0130 41 1 2.8590 -3.7443 -0.8723 42 1 2.8606 -3.7355 0.9077 43 1 2.6138 -6.3191 -0.7288 44 1 2.6328 -6.1320 1.0412 45 1 3.0784 -9.7509 0.5234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569095708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:44 Heat of formation + Delta-G solvation = 45.990292 kcal Electronic energy + Delta-G solvation = -24481.256046 eV Core-core repulsion = 21040.902145 eV Total energy + Delta-G solvation = -3440.353901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.158 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.95376 -39.68982 -38.55410 -36.47934 -35.48323 -34.17178 -33.27088 -32.20652 -31.72241 -29.45067 -28.30225 -27.32899 -25.42020 -23.91354 -23.56105 -23.53616 -21.84243 -21.09279 -18.81412 -18.54255 -18.28259 -17.65085 -16.98659 -16.50857 -16.50460 -15.71648 -15.43790 -15.09492 -15.03317 -14.83758 -14.58547 -14.47783 -14.43361 -14.25942 -14.03266 -13.83014 -13.74169 -13.66932 -13.24977 -13.18743 -12.99166 -12.71218 -12.61927 -12.53504 -12.39984 -12.17253 -12.04217 -11.82505 -11.51857 -11.40062 -11.26151 -11.17548 -10.56178 -9.77978 -9.71197 -9.56707 -8.20882 -7.99678 -6.29121 -0.01824 0.56357 0.58488 1.17500 1.40821 1.42354 1.49042 1.87865 1.90660 2.38220 2.50954 2.80213 3.11860 3.17474 3.27074 3.80553 3.86720 3.93041 4.02090 4.17806 4.21117 4.28227 4.29662 4.45160 4.48597 4.60930 4.63914 4.71089 4.72419 4.82094 4.83442 4.86826 4.92465 5.04437 5.11325 5.22742 5.33234 5.39937 5.44569 5.48750 5.57551 5.58236 5.69841 5.71505 5.76604 5.95795 5.96769 6.15701 6.19228 6.40817 6.68373 6.79123 6.85754 7.39519 8.89637 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.002120 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.619345 B =13205.216502 C =13970.191226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.173 4.173 3 C -0.065 4.065 4 C -0.125 4.125 5 C -0.041 4.041 6 C -0.134 4.134 7 C -0.122 4.122 8 C -0.137 4.137 9 C -0.123 4.123 10 C -0.136 4.136 11 C -0.069 4.069 12 C -0.205 4.205 13 C 0.214 3.786 14 N -0.742 5.742 15 C 0.141 3.859 16 C 0.011 3.989 17 H 0.130 0.870 18 C 0.249 3.751 19 N -0.499 5.499 20 C 0.039 3.961 21 C -0.541 4.541 22 H 0.056 0.944 23 C 0.012 3.988 24 N -0.921 5.921 25 Si 0.948 3.052 26 H -0.282 1.282 27 H -0.283 1.283 28 H -0.263 1.263 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.402 0.598 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.004 0.996 44 H 0.041 0.959 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.338 26.922 3.033 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.177 4.177 3 C -0.083 4.083 4 C -0.127 4.127 5 C -0.041 4.041 6 C -0.152 4.152 7 C -0.140 4.140 8 C -0.155 4.155 9 C -0.141 4.141 10 C -0.154 4.154 11 C -0.087 4.087 12 C -0.228 4.228 13 C 0.110 3.890 14 N -0.372 5.372 15 C 0.016 3.984 16 C -0.010 4.010 17 H 0.147 0.853 18 C -0.068 4.068 19 N -0.176 5.176 20 C 0.001 3.999 21 C -0.579 4.579 22 H 0.074 0.926 23 C -0.187 4.187 24 N -0.561 5.561 25 Si 0.773 3.227 26 H -0.208 1.208 27 H -0.209 1.209 28 H -0.188 1.188 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.238 0.762 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.023 0.977 44 H 0.060 0.940 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.675 26.580 1.585 26.880 hybrid contribution -0.580 -1.438 0.202 1.563 sum 3.095 25.142 1.787 25.395 Atomic orbital electron populations 1.20624 0.90164 1.03219 1.02142 1.19520 0.96764 0.91425 1.10036 1.21011 0.93009 0.97345 0.96971 1.18670 0.93187 0.92247 1.08556 1.18936 0.93447 0.92330 0.99410 1.21439 1.00618 0.91894 1.01255 1.21381 0.94808 0.98348 0.99479 1.21503 0.94628 0.98826 1.00545 1.21376 1.00946 0.92247 0.99511 1.21454 0.93437 0.99218 1.01265 1.21132 1.00187 0.90961 0.96459 1.20784 0.92176 0.99270 1.10541 1.17917 0.91663 0.85818 0.93624 1.44861 1.08464 1.02425 1.81448 1.21364 0.93587 0.80320 1.03143 1.19379 0.95924 0.97640 0.88089 0.85275 1.29545 0.92289 0.90404 0.94531 1.81073 1.11996 1.11452 1.13124 1.18963 0.94801 0.88433 0.97736 1.21497 0.93463 0.92636 1.50278 0.92593 1.25696 0.96621 1.01389 0.95036 1.70012 1.14060 1.21220 1.50783 0.85763 0.79265 0.78831 0.78792 1.20771 1.20873 1.18754 0.91782 0.89968 0.91967 0.84412 0.84995 0.84075 0.84124 0.84234 0.85186 0.84621 0.85148 0.76179 0.92038 0.88519 0.97717 0.94033 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 9.57 71.24 0.68 -1.23 16 2 C -0.17 -3.90 5.89 -19.77 -0.12 -4.01 16 3 C -0.06 -1.38 9.07 22.46 0.20 -1.18 16 4 C -0.12 -2.79 5.88 -20.02 -0.12 -2.91 16 5 C -0.04 -0.85 5.88 -20.04 -0.12 -0.97 16 6 C -0.13 -2.38 9.43 22.49 0.21 -2.17 16 7 C -0.12 -1.82 10.03 22.24 0.22 -1.60 16 8 C -0.14 -1.94 10.04 22.31 0.22 -1.72 16 9 C -0.12 -1.90 10.03 22.24 0.22 -1.68 16 10 C -0.14 -2.51 9.43 22.49 0.21 -2.30 16 11 C -0.07 -1.55 9.42 22.46 0.21 -1.34 16 12 C -0.21 -4.96 9.29 22.36 0.21 -4.75 16 13 C 0.21 5.31 6.63 38.28 0.25 5.56 16 14 N -0.74 -18.19 5.41 -339.32 -1.84 -20.03 16 15 C 0.14 3.75 4.27 86.38 0.37 4.11 16 16 C 0.01 0.37 2.26 -12.60 -0.03 0.35 16 17 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 18 C 0.25 9.43 13.45 89.44 1.20 10.64 16 19 N -0.50 -21.01 18.54 20.01 0.37 -20.64 16 20 C 0.04 1.72 4.42 29.85 0.13 1.85 16 21 C -0.54 -27.50 8.60 25.60 0.22 -27.28 16 22 H 0.06 2.79 7.59 -2.91 -0.02 2.77 16 23 C 0.01 0.64 5.46 84.66 0.46 1.10 16 24 N -0.92 -51.66 13.29 21.45 0.28 -51.37 16 25 Si 0.95 42.46 29.54 68.60 2.03 44.48 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 31 H 0.06 1.11 6.52 -2.38 -0.02 1.09 16 32 H 0.14 2.31 6.20 -2.91 -0.02 2.30 16 33 H 0.13 1.94 6.20 -2.91 -0.02 1.92 16 34 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.13 2.09 6.20 -2.91 -0.02 2.07 16 38 H 0.14 2.51 6.20 -2.91 -0.02 2.49 16 39 H 0.13 2.96 6.71 -2.91 -0.02 2.94 16 40 H 0.40 9.33 6.18 -92.71 -0.57 8.76 16 41 H 0.06 1.71 7.94 -2.39 -0.02 1.69 16 42 H 0.10 2.31 7.95 -2.38 -0.02 2.29 16 43 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -63.47 377.97 5.95 -57.52 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.44 Total: 19.56 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 4.66 Total: -29.53 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -1.18 Total: -92.04 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -63.47 5.95 -57.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569095708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.511 kcal (2) G-P(sol) polarization free energy of solvation -63.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds