Wall clock time and date at job start Tue Mar 31 2020 13:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.50706 * 109.46573 * 180.02562 * 3 2 1 5 5 O 1.21274 * 120.00042 * 359.72068 * 4 3 2 6 6 N 1.34777 * 119.99766 * 179.97438 * 4 3 2 7 7 C 1.48112 * 127.03535 * 179.70517 * 6 4 3 8 8 C 1.54595 * 103.42552 * 219.29028 * 7 6 4 9 9 H 1.09004 * 110.57465 * 81.17359 * 8 7 6 10 10 C 1.50702 * 110.83303 * 204.44417 * 8 7 6 11 11 C 1.38224 * 120.00875 * 53.29190 * 10 8 7 12 12 C 1.38229 * 120.02089 * 179.71679 * 11 10 8 13 13 C 1.38267 * 120.04869 * 0.55657 * 12 11 10 14 14 C 1.38167 * 120.03184 * 359.71686 * 13 12 11 15 15 C 1.38436 * 120.01484 * 233.56059 * 10 8 7 16 16 F 1.35098 * 120.02504 * 359.97438 * 15 10 8 17 17 C 1.54618 * 102.91348 * 322.86702 * 8 7 6 18 18 H 1.08998 * 110.41334 * 262.76333 * 17 8 7 19 19 N 1.46502 * 110.32447 * 140.58870 * 17 8 7 20 20 C 1.36939 * 119.99558 * 157.92541 * 19 17 8 21 21 H 1.08000 * 119.99803 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00024 * 179.97438 * 20 19 17 23 23 N 1.31614 * 120.00318 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99895 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47187 * 89.99766 * 24 22 20 26 26 H 1.48495 * 109.47558 * 209.99795 * 24 22 20 27 27 H 1.48503 * 109.47276 * 330.00096 * 24 22 20 28 28 C 1.47488 * 127.03504 * 0.03018 * 6 4 3 29 29 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 30 30 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 31 31 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 33 33 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 34 34 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 35 35 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 36 36 H 1.08999 * 110.66399 * 337.77638 * 7 6 4 37 37 H 1.09006 * 110.66254 * 100.88769 * 7 6 4 38 38 H 1.07994 * 119.99191 * 359.97438 * 11 10 8 39 39 H 1.08005 * 119.97225 * 180.25239 * 12 11 10 40 40 H 1.08002 * 119.98484 * 179.74421 * 13 12 11 41 41 H 1.07996 * 120.01967 * 180.02562 * 14 13 12 42 42 H 0.96991 * 120.00178 * 337.92773 * 19 17 8 43 43 H 0.96998 * 120.00451 * 180.02562 * 23 22 20 44 44 H 1.09005 * 109.90835 * 273.87796 * 28 6 4 45 45 H 1.09006 * 109.91138 * 35.14855 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3921 0.0041 6 7 4.2210 2.6096 -0.0013 7 6 5.6910 2.7909 0.0041 8 6 5.9009 3.9926 0.9538 9 1 5.8732 3.6682 1.9941 10 6 7.1970 4.6978 0.6475 11 6 7.4646 5.1244 -0.6398 12 6 8.6508 5.7764 -0.9198 13 6 9.5760 5.9923 0.0847 14 6 9.3132 5.5618 1.3711 15 6 8.1226 4.9136 1.6540 16 9 7.8643 4.4927 2.9115 17 6 4.6931 4.9027 0.6317 18 1 4.9813 5.6812 -0.0747 19 7 4.1651 5.5014 1.8601 20 6 3.4246 6.6516 1.7978 21 1 3.2295 7.1171 0.8429 22 6 2.9239 7.2186 2.9616 23 7 2.2117 8.3238 2.9017 24 14 3.2607 6.4130 4.6130 25 1 4.5184 6.9595 5.1830 26 1 2.1346 6.6933 5.5395 27 1 3.3971 4.9457 4.4293 28 6 3.6456 3.9676 -0.0008 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 6.1868 1.9021 0.3944 37 1 6.0532 3.0264 -0.9967 38 1 6.7448 4.9519 -1.4262 39 1 8.8572 6.1129 -1.9251 40 1 10.5043 6.4982 -0.1361 41 1 10.0358 5.7310 2.1557 42 1 4.3401 5.0831 2.7175 43 1 1.8621 8.7203 3.7150 44 1 3.4361 4.2823 -1.0232 45 1 2.7297 3.9825 0.5900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079279521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:20 Heat of formation + Delta-G solvation = -46.406920 kcal Electronic energy + Delta-G solvation = -27416.113836 eV Core-core repulsion = 23540.984066 eV Total energy + Delta-G solvation = -3875.129770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.74068 -40.18599 -39.00341 -37.43889 -34.37297 -34.15533 -32.80304 -31.26671 -30.48164 -29.21521 -27.90013 -27.32954 -24.34119 -23.44449 -22.67306 -21.68762 -21.19140 -20.07910 -18.94245 -17.86073 -17.49548 -16.84949 -16.48897 -16.11008 -15.58147 -15.42842 -15.36215 -14.96159 -14.48169 -14.15804 -13.92103 -13.70092 -13.41441 -13.16792 -13.01731 -12.93634 -12.69691 -12.51719 -12.32193 -12.06342 -11.90970 -11.74746 -11.68260 -11.52661 -11.15911 -11.01707 -10.87191 -10.78738 -10.75337 -10.66813 -10.18314 -9.71948 -9.65957 -9.16880 -8.88400 -8.64024 -8.42170 -7.40492 -5.88031 -3.25790 1.20136 1.23138 2.80157 3.12243 3.32353 3.36693 3.41262 3.59591 4.33965 4.50416 4.59688 4.60881 4.69939 4.90285 4.92164 4.98138 5.00962 5.04951 5.20160 5.31701 5.35146 5.38668 5.42857 5.50139 5.51313 5.61767 5.67432 5.70357 5.80309 5.84257 5.92783 5.98540 6.03108 6.07190 6.14601 6.19226 6.22301 6.28229 6.35974 6.38420 6.41512 6.66855 6.92714 7.72821 7.85370 8.30149 8.32365 9.06500 9.79505 9.97238 11.29367 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008095 B = 0.005551 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.258352 B = 5042.704019 C = 7428.561089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.137 4.137 4 C 0.532 3.468 5 O -0.555 6.555 6 N -0.619 5.619 7 C 0.118 3.882 8 C -0.080 4.080 9 H 0.094 0.906 10 C -0.089 4.089 11 C -0.087 4.087 12 C -0.128 4.128 13 C -0.099 4.099 14 C -0.154 4.154 15 C 0.106 3.894 16 F -0.137 7.137 17 C 0.186 3.814 18 H 0.079 0.921 19 N -0.738 5.738 20 C -0.253 4.253 21 H 0.093 0.907 22 C 0.013 3.987 23 N -0.928 5.928 24 Si 0.879 3.121 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.072 3.928 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.364 0.636 43 H 0.261 0.739 44 H 0.063 0.937 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.318 -9.736 -8.787 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.177 4.177 4 C 0.322 3.678 5 O -0.434 6.434 6 N -0.352 5.352 7 C -0.005 4.005 8 C -0.100 4.100 9 H 0.112 0.888 10 C -0.090 4.090 11 C -0.105 4.105 12 C -0.146 4.146 13 C -0.117 4.117 14 C -0.172 4.172 15 C 0.087 3.913 16 F -0.116 7.116 17 C 0.074 3.926 18 H 0.097 0.903 19 N -0.379 5.379 20 C -0.382 4.382 21 H 0.111 0.889 22 C -0.183 4.183 23 N -0.574 5.574 24 Si 0.709 3.291 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.203 1.203 28 C -0.054 4.054 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.197 0.803 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.409 -10.154 -8.787 15.844 hybrid contribution 0.091 -0.255 1.608 1.631 sum 8.500 -10.409 -7.179 15.236 Atomic orbital electron populations 1.21796 0.95540 1.01680 1.02012 1.21270 0.95201 0.94838 1.03221 1.21697 0.91494 0.99773 1.04749 1.20420 0.90101 0.81907 0.75420 1.90661 1.70671 1.30706 1.51315 1.48870 1.07314 1.06431 1.72602 1.22350 0.81551 0.97685 0.98922 1.21490 0.92227 0.95177 1.01102 0.88817 1.19626 0.95157 1.00958 0.93273 1.20899 0.97154 0.97054 0.95378 1.21145 0.94161 0.99698 0.99622 1.20944 0.99608 0.99115 0.92033 1.21099 0.96574 1.01103 0.98458 1.17563 0.95029 0.99283 0.79428 1.91492 1.94239 1.87919 1.37909 1.21152 0.88713 0.92450 0.90264 0.90331 1.42843 1.63519 1.29113 1.02467 1.19026 1.24733 0.99005 0.95426 0.88908 1.24636 0.99494 0.96988 0.97224 1.69686 1.39470 1.20594 1.27669 0.86645 0.77796 0.79174 0.85500 1.20881 1.21592 1.20269 1.23407 1.00246 0.80665 1.01060 0.92524 0.92658 0.92607 0.91496 0.91420 0.88605 0.88974 0.89996 0.90755 0.84954 0.85458 0.85348 0.85008 0.80258 0.92893 0.91827 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.11 -1.26 5.22 -26.73 -0.14 -1.40 16 3 C -0.14 -1.73 4.78 -27.88 -0.13 -1.87 16 4 C 0.53 8.35 7.89 -10.98 -0.09 8.27 16 5 O -0.55 -10.27 16.19 5.56 0.09 -10.18 16 6 N -0.62 -9.35 3.29 -169.98 -0.56 -9.91 16 7 C 0.12 1.66 6.45 -2.32 -0.01 1.65 16 8 C -0.08 -1.24 2.94 -90.08 -0.27 -1.50 16 9 H 0.09 1.63 6.83 -51.93 -0.35 1.27 16 10 C -0.09 -1.28 4.93 -104.55 -0.52 -1.79 16 11 C -0.09 -1.04 8.19 -39.59 -0.32 -1.36 16 12 C -0.13 -1.34 10.04 -39.57 -0.40 -1.74 16 13 C -0.10 -1.04 10.04 -39.60 -0.40 -1.43 16 14 C -0.15 -1.90 10.03 -39.52 -0.40 -2.30 16 15 C 0.11 1.60 7.25 -39.42 -0.29 1.31 16 16 F -0.14 -2.30 16.25 2.25 0.04 -2.26 16 17 C 0.19 3.22 3.13 -66.56 -0.21 3.01 16 18 H 0.08 1.36 7.15 -51.93 -0.37 0.99 16 19 N -0.74 -16.27 4.88 -52.09 -0.25 -16.52 16 20 C -0.25 -6.63 10.45 -15.06 -0.16 -6.79 16 21 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 22 C 0.01 0.37 5.50 -17.43 -0.10 0.28 16 23 N -0.93 -27.98 13.97 55.49 0.78 -27.21 16 24 Si 0.88 21.71 27.74 -169.99 -4.71 16.99 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 28 C 0.07 1.11 6.56 -2.98 -0.02 1.09 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.10 1.21 7.91 -51.93 -0.41 0.80 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.21 7.85 -51.93 -0.41 0.81 16 37 H 0.07 0.90 6.71 -51.93 -0.35 0.55 16 38 H 0.13 1.35 7.26 -52.49 -0.38 0.97 16 39 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.36 8.26 5.40 -40.82 -0.22 8.04 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.50 7.32 -51.93 -0.38 1.12 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -31.89 370.25 -8.81 -40.70 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.69 Total: 8.48 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -3.07 Total: -5.67 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.04 Total: -53.64 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.89 -8.81 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079279521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.712 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds