Wall clock time and date at job start Tue Mar 31 2020 13:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47357 * 2 1 4 4 C 1.53003 * 109.47189 * 239.99548 * 2 1 3 5 5 C 1.50696 * 109.46958 * 175.00357 * 4 2 1 6 6 H 1.07999 * 120.00409 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99965 * 179.72736 * 5 4 2 8 8 N 1.31511 * 119.99738 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00191 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47669 * 89.99404 * 9 7 5 11 11 H 1.48501 * 109.47356 * 209.99762 * 9 7 5 12 12 H 1.48505 * 109.47217 * 329.99420 * 9 7 5 13 13 N 1.46902 * 109.46842 * 119.99699 * 2 1 3 14 14 C 1.46902 * 111.00046 * 59.30052 * 13 2 1 15 15 C 1.53240 * 109.33936 * 172.74337 * 14 13 2 16 16 N 1.47084 * 108.51786 * 53.83585 * 15 14 13 17 17 C 1.34773 * 120.88401 * 128.79276 * 16 15 14 18 18 O 1.21572 * 119.99619 * 354.81732 * 17 16 15 19 19 C 1.47721 * 120.00244 * 174.81756 * 17 16 15 20 20 C 1.39647 * 120.11646 * 326.67210 * 19 17 16 21 21 C 1.37841 * 119.87773 * 179.73952 * 20 19 17 22 22 C 1.38650 * 120.11721 * 0.51390 * 21 20 19 23 23 F 1.35101 * 119.88394 * 179.74395 * 22 21 20 24 24 C 1.38658 * 120.24178 * 359.76021 * 22 21 20 25 25 C 1.37839 * 120.11521 * 359.97438 * 24 22 21 26 26 C 1.47076 * 118.23632 * 308.80747 * 16 15 14 27 27 C 1.46901 * 111.00185 * 295.00126 * 13 2 1 28 28 H 1.09006 * 109.46996 * 59.99836 * 1 2 3 29 29 H 1.09002 * 109.47357 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47461 * 300.00481 * 1 2 3 31 31 H 1.09001 * 109.46866 * 55.00277 * 4 2 1 32 32 H 1.08994 * 109.46910 * 295.00080 * 4 2 1 33 33 H 0.96999 * 119.99912 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.49186 * 292.70658 * 14 13 2 35 35 H 1.09003 * 109.49150 * 52.78721 * 14 13 2 36 36 H 1.08998 * 109.63181 * 294.12370 * 15 14 13 37 37 H 1.09006 * 109.62601 * 173.54027 * 15 14 13 38 38 H 1.08003 * 120.06147 * 359.97438 * 20 19 17 39 39 H 1.07999 * 119.94382 * 180.25153 * 21 20 19 40 40 H 1.07999 * 119.93997 * 179.97438 * 24 22 21 41 41 H 1.08005 * 120.05451 * 180.02562 * 25 24 22 42 42 H 1.08995 * 109.63123 * 291.48313 * 26 16 15 43 43 H 1.08997 * 109.62830 * 170.89984 * 26 16 15 44 44 H 1.09006 * 109.48694 * 307.20982 * 27 13 2 45 45 H 1.08994 * 109.49365 * 67.29235 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6151 -1.3126 6 1 4.0789 -0.0856 -0.5395 7 6 4.2309 -1.1981 -2.3549 8 7 3.5774 -1.8475 -3.2934 9 14 6.0926 -1.0670 -2.4331 10 1 6.7004 -2.2164 -1.7157 11 1 6.5307 -1.0815 -3.8520 12 1 6.5268 0.2011 -1.7940 13 7 2.0196 -0.6925 1.1995 14 6 1.5349 -2.0786 1.2419 15 6 2.2093 -2.8167 2.4032 16 7 1.9930 -2.0443 3.6361 17 6 1.5011 -2.6332 4.7441 18 8 1.1415 -3.7939 4.7068 19 6 1.3988 -1.8683 6.0037 20 6 2.3470 -0.8894 6.3081 21 6 2.2438 -0.1749 7.4823 22 6 1.2069 -0.4340 8.3655 23 9 1.1132 0.2656 9.5175 24 6 0.2658 -1.4088 8.0709 25 6 0.3566 -2.1254 6.8969 26 6 2.3275 -0.6121 3.6277 27 6 1.6486 0.0392 2.4181 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6054 -0.2619 -2.1370 32 1 1.7516 -1.7715 -1.2054 33 1 4.0621 -2.2580 -4.0265 34 1 0.4546 -2.0818 1.3871 35 1 1.7778 -2.5777 0.3038 36 1 3.2782 -2.9053 2.2094 37 1 1.7702 -3.8086 2.5109 38 1 3.1577 -0.6899 5.6229 39 1 2.9743 0.5853 7.7168 40 1 -0.5396 -1.6070 8.7626 41 1 -0.3772 -2.8842 6.6683 42 1 3.4078 -0.4888 3.5515 43 1 1.9668 -0.1464 4.5448 44 1 1.9740 1.0761 2.3330 45 1 0.5668 0.0064 2.5469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351619607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:55 Heat of formation + Delta-G solvation = -32.240268 kcal Electronic energy + Delta-G solvation = -27198.933720 eV Core-core repulsion = 23324.418263 eV Total energy + Delta-G solvation = -3874.515458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.31062 -40.72913 -38.87916 -37.91321 -35.46978 -32.82127 -32.00141 -31.42059 -30.91963 -30.07247 -27.41702 -26.54521 -24.16807 -23.87712 -23.17456 -22.78958 -21.39025 -19.94179 -18.69480 -17.95583 -17.50503 -16.76207 -16.23720 -16.04256 -15.86753 -15.40174 -15.13752 -14.97221 -14.69407 -14.38464 -14.21032 -14.06294 -13.89512 -13.47828 -13.23447 -13.03628 -12.81909 -12.57582 -12.12866 -12.06587 -11.80369 -11.74357 -11.42930 -11.37302 -11.14063 -10.84130 -10.69083 -10.56433 -10.42334 -10.01435 -9.92123 -9.52149 -9.25001 -9.09595 -9.04043 -8.63324 -8.30600 -7.60638 -5.93881 -3.92399 0.40551 0.80088 2.53746 2.89504 3.33751 3.35874 3.42509 3.45434 3.79183 4.23471 4.31227 4.38177 4.44112 4.52042 4.75962 4.89635 5.00532 5.17185 5.24741 5.39869 5.43258 5.44970 5.49380 5.58898 5.65633 5.66156 5.71614 5.77595 5.83809 5.88964 5.90073 5.95541 6.00303 6.22612 6.29315 6.37299 6.43488 6.56531 6.68752 6.88260 7.31803 7.46886 7.57621 7.79550 7.91023 8.06463 8.06872 8.51077 9.13680 9.69919 11.17935 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.002929 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.794079 B = 9558.148941 C = 9723.191370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.072 0.928 4 C 0.028 3.972 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.509 5.509 14 C 0.042 3.958 15 C 0.117 3.883 16 N -0.600 5.600 17 C 0.557 3.443 18 O -0.540 6.540 19 C -0.137 4.137 20 C -0.064 4.064 21 C -0.161 4.161 22 C 0.118 3.882 23 F -0.137 7.137 24 C -0.161 4.161 25 C -0.036 4.036 26 C 0.097 3.903 27 C 0.036 3.964 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.258 0.742 34 H 0.029 0.971 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 3.745 20.939 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.090 0.910 4 C -0.009 4.009 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.543 5.543 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.233 5.233 14 C -0.087 4.087 15 C -0.005 4.005 16 N -0.332 5.332 17 C 0.346 3.654 18 O -0.419 6.419 19 C -0.141 4.141 20 C -0.082 4.082 21 C -0.180 4.180 22 C 0.098 3.902 23 F -0.115 7.115 24 C -0.180 4.180 25 C -0.055 4.055 26 C -0.026 4.026 27 C -0.093 4.093 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.391 3.047 20.746 21.651 hybrid contribution 0.153 0.298 0.082 0.345 sum -5.238 3.345 20.828 21.736 Atomic orbital electron populations 1.22524 0.99711 1.01329 1.00733 1.21934 0.90053 0.98466 0.91561 0.90995 1.19246 0.96482 0.95342 0.89845 1.21149 0.91648 1.33091 1.07226 0.92099 1.25008 0.98032 0.95819 0.95966 1.69957 1.35281 1.36480 1.12604 0.86630 0.86365 0.78327 0.76820 1.20901 1.21639 1.20035 1.62093 1.59116 1.01186 1.00929 1.22511 0.96099 0.90609 0.99473 1.21880 1.01837 0.95202 0.81586 1.48125 1.62839 1.10442 1.11830 1.18191 0.77546 0.86520 0.83182 1.90782 1.49221 1.17001 1.84885 1.20046 0.98318 0.99203 0.96491 1.21541 0.98269 0.92597 0.95799 1.21124 0.99128 1.03043 0.94672 1.17968 0.96499 0.92679 0.83011 1.91523 1.95877 1.77281 1.46830 1.21122 1.00367 0.97406 0.99112 1.21090 0.96394 0.96776 0.91206 1.22443 1.01042 0.80014 0.99097 1.22478 0.97473 0.98432 0.90903 0.92432 0.92985 0.94176 0.96254 0.96149 0.93246 0.95311 0.87588 0.90068 0.89045 0.83346 0.83930 0.84057 0.83949 0.89995 0.88955 0.89873 0.95006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 8.51 37.16 0.32 -2.68 16 2 C 0.09 1.65 2.30 -67.71 -0.16 1.49 16 3 H 0.07 1.37 8.07 -51.93 -0.42 0.96 16 4 C 0.03 0.67 4.27 -27.88 -0.12 0.55 16 5 C -0.49 -13.11 8.84 -34.44 -0.30 -13.41 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.51 -8.72 4.33 -226.33 -0.98 -9.70 16 14 C 0.04 0.70 4.77 -3.70 -0.02 0.68 16 15 C 0.12 1.79 6.61 -3.60 -0.02 1.77 16 16 N -0.60 -8.15 3.01 -173.62 -0.52 -8.67 16 17 C 0.56 7.80 7.42 -12.39 -0.09 7.71 16 18 O -0.54 -9.31 16.23 5.30 0.09 -9.22 16 19 C -0.14 -1.50 5.36 -104.97 -0.56 -2.07 16 20 C -0.06 -0.56 7.38 -39.20 -0.29 -0.85 16 21 C -0.16 -1.27 10.01 -39.57 -0.40 -1.67 16 22 C 0.12 1.03 7.31 -39.27 -0.29 0.74 16 23 F -0.14 -1.27 17.26 2.25 0.04 -1.23 16 24 C -0.16 -1.34 10.01 -39.57 -0.40 -1.74 16 25 C -0.04 -0.35 9.60 -39.20 -0.38 -0.73 16 26 C 0.10 1.10 4.87 -3.60 -0.02 1.08 16 27 C 0.04 0.49 5.14 -3.70 -0.02 0.47 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 30 H 0.04 0.58 6.69 -51.93 -0.35 0.23 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.52 6.02 -51.93 -0.31 0.21 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 34 H 0.03 0.48 6.71 -51.93 -0.35 0.13 16 35 H 0.11 2.06 5.87 -51.93 -0.31 1.76 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.43 7.04 -51.93 -0.37 1.06 16 38 H 0.15 1.12 5.77 -52.48 -0.30 0.82 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.14 1.33 7.97 -52.48 -0.42 0.91 16 42 H 0.08 0.90 7.97 -51.93 -0.41 0.49 16 43 H 0.09 0.84 4.50 -51.93 -0.23 0.60 16 44 H 0.08 1.03 8.05 -51.93 -0.42 0.61 16 45 H 0.03 0.43 6.81 -51.93 -0.35 0.08 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -31.00 357.44 -9.35 -40.34 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.23 Total: -0.27 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.84 Total: -7.32 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.77 Total: -44.06 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.00 -9.35 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351619607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.103 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds