Wall clock time and date at job start Tue Mar 31 2020 12:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.45669 * 2 1 4 4 C 1.54381 * 110.40830 * 122.40830 * 2 1 3 5 5 C 1.54261 * 105.05805 * 142.63162 * 4 2 1 6 6 H 1.08995 * 110.32754 * 241.10069 * 5 4 2 7 7 C 1.50708 * 110.32320 * 118.89615 * 5 4 2 8 8 C 1.38248 * 119.97174 * 302.63346 * 7 5 4 9 9 C 1.38202 * 120.02096 * 179.76686 * 8 7 5 10 10 C 1.38459 * 119.97313 * 0.51120 * 9 8 7 11 11 F 1.35103 * 120.02086 * 179.76906 * 10 9 8 12 12 C 1.38459 * 119.94958 * 359.74267 * 10 9 8 13 13 C 1.38195 * 119.97452 * 0.02562 * 12 10 9 14 14 C 1.54384 * 105.06124 * 0.02562 * 5 4 2 15 15 N 1.48553 * 110.41221 * 237.58287 * 2 1 3 16 16 C 1.46896 * 110.99922 * 82.18132 * 15 2 1 17 17 C 1.50709 * 109.47179 * 185.29127 * 16 15 2 18 18 O 1.21281 * 119.99753 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00069 * 180.02562 * 17 16 15 20 20 C 1.46493 * 119.99700 * 180.02562 * 19 17 16 21 21 C 1.50706 * 109.47128 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99758 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00102 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00217 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99766 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47483 * 269.99808 * 25 23 21 27 27 H 1.48499 * 109.47134 * 30.00322 * 25 23 21 28 28 H 1.48507 * 109.46904 * 150.00145 * 25 23 21 29 29 H 1.08996 * 109.47043 * 180.96317 * 1 2 3 30 30 H 1.08996 * 109.47343 * 300.96481 * 1 2 3 31 31 H 1.09002 * 109.46905 * 60.95954 * 1 2 3 32 32 H 1.09000 * 110.32401 * 23.73914 * 4 2 1 33 33 H 1.09002 * 110.40834 * 261.57153 * 4 2 1 34 34 H 1.08001 * 119.98534 * 0.02562 * 8 7 5 35 35 H 1.08002 * 120.01025 * 180.25481 * 9 8 7 36 36 H 1.08003 * 120.01144 * 180.02562 * 12 10 9 37 37 H 1.08002 * 119.98404 * 180.02562 * 13 12 10 38 38 H 1.09002 * 110.40825 * 217.37149 * 14 5 4 39 39 H 1.08995 * 110.41201 * 94.92555 * 14 5 4 40 40 H 1.09000 * 109.47274 * 65.29472 * 16 15 2 41 41 H 1.08997 * 109.47798 * 305.29271 * 16 15 2 42 42 H 0.96998 * 120.00160 * 359.97438 * 19 17 16 43 43 H 1.09001 * 109.47786 * 60.00101 * 20 19 17 44 44 H 1.09006 * 109.47401 * 299.99686 * 20 19 17 45 45 H 0.97001 * 119.99646 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0684 -0.7755 1.2215 5 6 3.3177 -1.5188 0.7056 6 1 3.1861 -2.5960 0.8068 7 6 4.5432 -1.0672 1.4575 8 6 4.8924 0.2704 1.4693 9 6 6.0133 0.6863 2.1624 10 6 6.7926 -0.2386 2.8364 11 9 7.8913 0.1663 3.5104 12 6 6.4448 -1.5787 2.8194 13 6 5.3208 -1.9917 2.1296 14 6 3.4294 -1.1294 -0.7842 15 7 2.0481 -0.7464 -1.1753 16 6 2.0569 0.1012 -2.3750 17 6 2.4635 -0.7230 -3.5694 18 8 2.7203 -1.9006 -3.4345 19 7 2.5419 -0.1514 -4.7875 20 6 2.9366 -0.9528 -5.9486 21 6 2.9457 -0.0833 -7.1794 22 1 2.6833 0.9617 -7.1043 23 6 3.2891 -0.6217 -8.4013 24 7 3.6082 -1.8943 -8.4929 25 14 3.2997 0.4560 -9.9271 26 1 1.9603 0.4208 -10.5673 27 1 3.6290 1.8525 -9.5444 28 1 4.3184 -0.0488 -10.8825 29 1 -0.3633 -1.0275 0.0173 30 1 -0.3634 0.5287 0.8812 31 1 -0.3633 0.4989 -0.8985 32 1 1.3234 -1.4879 1.5760 33 1 2.3412 -0.0852 2.0198 34 1 4.2866 0.9911 0.9401 35 1 6.2836 1.7319 2.1749 36 1 7.0518 -2.3010 3.3452 37 1 5.0491 -3.0369 2.1166 38 1 3.7693 -1.9801 -1.3749 39 1 4.1078 -0.2851 -0.9065 40 1 2.7664 0.9173 -2.2382 41 1 1.0598 0.5102 -2.5384 42 1 2.3362 0.7903 -4.8955 43 1 2.2266 -1.7684 -6.0856 44 1 3.9335 -1.3625 -5.7854 45 1 3.6024 -2.4540 -7.7006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736629928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:49 Heat of formation + Delta-G solvation = -64.040689 kcal Electronic energy + Delta-G solvation = -26290.006143 eV Core-core repulsion = 22414.111716 eV Total energy + Delta-G solvation = -3875.894427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.14934 -40.41976 -39.06834 -37.92017 -34.42111 -33.38784 -32.41989 -31.81698 -31.46437 -29.35231 -27.56784 -25.91460 -25.24631 -23.53369 -22.92644 -22.39169 -20.62015 -20.18519 -19.70130 -18.00679 -17.47860 -16.76556 -16.45821 -16.08788 -15.85096 -15.38935 -15.32219 -14.86509 -14.66768 -14.40462 -13.92552 -13.82494 -13.73446 -13.54088 -13.34659 -13.08218 -12.81480 -12.59024 -12.38686 -12.31678 -11.98889 -11.84791 -11.73910 -11.39599 -11.32100 -11.11603 -11.03139 -10.91220 -10.77129 -10.71101 -10.19237 -9.42594 -9.20209 -8.82248 -8.79934 -8.69125 -8.43315 -7.99493 -6.52868 -4.26496 0.82254 0.91535 3.24121 3.28599 3.36129 3.39700 3.54780 3.59043 3.96779 4.13567 4.31576 4.43102 4.47374 4.53484 4.58806 4.67200 4.87945 4.93583 4.98785 5.13439 5.22452 5.25837 5.29954 5.31366 5.33780 5.49362 5.53698 5.56405 5.61834 5.71334 5.74233 5.80819 5.84338 5.87013 5.99668 6.07795 6.14967 6.29929 6.57502 6.80499 6.85366 7.02181 7.21430 7.32261 7.65290 8.25954 8.46408 8.70582 8.99848 9.47499 10.87399 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.002545 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.780417 B =10997.533016 C =12096.538967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.055 3.945 3 H 0.051 0.949 4 C -0.110 4.110 5 C -0.055 4.055 6 H 0.092 0.908 7 C -0.079 4.079 8 C -0.086 4.086 9 C -0.151 4.151 10 C 0.090 3.910 11 F -0.143 7.143 12 C -0.151 4.151 13 C -0.085 4.085 14 C 0.043 3.957 15 N -0.484 5.484 16 C 0.025 3.975 17 C 0.500 3.500 18 O -0.539 6.539 19 N -0.711 5.711 20 C 0.242 3.758 21 C -0.623 4.623 22 H 0.057 0.943 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 1.078 2.922 26 H -0.286 1.286 27 H -0.288 1.288 28 H -0.282 1.282 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.043 0.957 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.391 0.609 43 H 0.016 0.984 44 H 0.015 0.985 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 6.016 24.854 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.054 4.054 3 H 0.069 0.931 4 C -0.148 4.148 5 C -0.074 4.074 6 H 0.110 0.890 7 C -0.079 4.079 8 C -0.104 4.104 9 C -0.169 4.169 10 C 0.071 3.929 11 F -0.121 7.121 12 C -0.170 4.170 13 C -0.103 4.103 14 C -0.084 4.084 15 N -0.208 5.208 16 C -0.107 4.107 17 C 0.284 3.716 18 O -0.417 6.417 19 N -0.360 5.360 20 C 0.121 3.879 21 C -0.661 4.661 22 H 0.075 0.925 23 C -0.184 4.184 24 N -0.537 5.537 25 Si 0.906 3.094 26 H -0.212 1.212 27 H -0.214 1.214 28 H -0.208 1.208 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.118 0.882 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.224 0.776 43 H 0.034 0.966 44 H 0.033 0.967 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.452 4.687 23.172 23.646 hybrid contribution 0.368 1.383 1.803 2.302 sum -0.084 6.070 24.975 25.702 Atomic orbital electron populations 1.21724 0.93615 1.02773 1.01359 1.22719 0.96386 0.95725 0.90523 0.93146 1.22473 0.96465 0.99069 0.96771 1.20931 0.91284 1.01235 0.93917 0.88968 1.19964 0.96789 0.93296 0.97885 1.20857 0.95980 0.95716 0.97870 1.21132 0.96291 0.99883 0.99642 1.17730 0.85547 0.93326 0.96334 1.91497 1.51244 1.91263 1.78115 1.21151 0.99149 0.94233 1.02434 1.20978 0.93556 0.99978 0.95834 1.23308 0.89541 1.01685 0.93889 1.65170 1.18663 1.35789 1.01169 1.22202 1.02757 0.94737 0.90988 1.20304 0.78675 0.88351 0.84299 1.90638 1.49615 1.16119 1.85309 1.46264 1.68018 1.13747 1.07998 1.19136 0.94809 0.91709 0.82293 1.22090 1.52916 0.97399 0.93735 0.92490 1.25879 0.93172 0.97866 1.01457 1.70729 1.43649 1.05656 1.33668 0.83414 0.77016 0.74239 0.74768 1.21248 1.21385 1.20775 0.91539 0.92365 0.92603 0.90365 0.91011 0.85312 0.84799 0.84738 0.84788 0.88153 0.93846 0.92300 0.88185 0.77604 0.96572 0.96672 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.34 37.16 0.35 -0.88 16 2 C 0.05 0.54 2.88 -66.07 -0.19 0.35 16 3 H 0.05 0.45 8.00 -51.93 -0.42 0.04 16 4 C -0.11 -0.95 5.95 -25.35 -0.15 -1.10 16 5 C -0.05 -0.55 3.28 -90.38 -0.30 -0.84 16 6 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 7 C -0.08 -0.74 4.75 -104.61 -0.50 -1.24 16 8 C -0.09 -0.78 8.07 -39.59 -0.32 -1.10 16 9 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 10 C 0.09 0.89 7.30 -39.42 -0.29 0.61 16 11 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 12 C -0.15 -1.35 10.03 -39.52 -0.40 -1.74 16 13 C -0.09 -0.75 9.68 -39.60 -0.38 -1.13 16 14 C 0.04 0.57 5.26 -2.17 -0.01 0.55 16 15 N -0.48 -6.45 4.74 -223.55 -1.06 -7.52 16 16 C 0.02 0.35 5.24 -4.97 -0.03 0.32 16 17 C 0.50 9.79 7.63 -10.98 -0.08 9.70 16 18 O -0.54 -12.65 14.84 5.56 0.08 -12.57 16 19 N -0.71 -14.91 5.55 -61.47 -0.34 -15.25 16 20 C 0.24 6.38 4.74 -5.19 -0.02 6.35 16 21 C -0.62 -17.11 9.28 -34.44 -0.32 -17.43 16 22 H 0.06 1.48 7.60 -52.48 -0.40 1.08 16 23 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 24 N -0.90 -27.38 13.65 55.43 0.76 -26.62 16 25 Si 1.08 24.42 29.90 -169.99 -5.08 19.34 16 26 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 32 H 0.08 0.65 7.84 -51.93 -0.41 0.24 16 33 H 0.07 0.55 7.28 -51.93 -0.38 0.17 16 34 H 0.13 1.04 7.79 -52.49 -0.41 0.63 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.13 0.94 7.97 -52.49 -0.42 0.52 16 38 H 0.10 1.63 6.91 -51.93 -0.36 1.27 16 39 H 0.04 0.55 6.64 -51.93 -0.34 0.21 16 40 H 0.06 0.72 7.88 -51.93 -0.41 0.31 16 41 H 0.10 1.22 7.28 -51.93 -0.38 0.84 16 42 H 0.39 7.07 8.32 -40.82 -0.34 6.73 16 43 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 44 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 45 H 0.27 8.39 7.22 -40.82 -0.29 8.10 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -32.90 370.59 -9.82 -42.72 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.66 Total: 4.63 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -3.13 Total: -8.83 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.64 Total: -49.39 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.08 Total: 19.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.90 -9.82 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736629928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.319 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds