Wall clock time and date at job start Tue Mar 31 2020 12:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.06813 * 2 1 4 4 C 1.53991 * 109.91759 * 238.78890 * 2 1 3 5 5 C 1.54585 * 105.14193 * 239.42212 * 4 2 1 6 6 H 1.09009 * 110.72551 * 96.40585 * 5 4 2 7 7 C 1.50699 * 110.87779 * 219.61274 * 5 4 2 8 8 C 1.38243 * 119.97503 * 54.77306 * 7 5 4 9 9 C 1.38200 * 120.02826 * 179.72760 * 8 7 5 10 10 C 1.38461 * 119.96912 * 0.56535 * 9 8 7 11 11 F 1.35109 * 120.02090 * 179.68417 * 10 9 8 12 12 C 1.38459 * 119.95165 * 359.70903 * 10 9 8 13 13 C 1.38197 * 119.97087 * 359.97438 * 12 10 9 14 14 C 1.54932 * 102.92479 * 338.04575 * 5 4 2 15 15 N 1.47900 * 109.91575 * 121.20135 * 2 1 3 16 16 C 1.46899 * 111.00319 * 265.19531 * 15 2 1 17 17 C 1.50695 * 109.47392 * 176.71049 * 16 15 2 18 18 O 1.21282 * 119.99902 * 353.75432 * 17 16 15 19 19 N 1.34781 * 120.00267 * 173.76430 * 17 16 15 20 20 C 1.46494 * 120.00387 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47393 * 179.97438 * 20 19 17 22 22 H 1.07993 * 119.99839 * 359.97438 * 21 20 19 23 23 C 1.37881 * 120.00184 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99960 * 359.72383 * 23 21 20 25 25 Si 1.86795 * 120.00224 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47181 * 59.99818 * 25 23 21 27 27 H 1.48498 * 109.47442 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47034 * 300.00177 * 25 23 21 29 29 H 1.09005 * 109.47190 * 300.25046 * 1 2 3 30 30 H 1.08998 * 109.47241 * 60.25250 * 1 2 3 31 31 H 1.09004 * 109.47090 * 180.25472 * 1 2 3 32 32 H 1.08998 * 110.30540 * 120.50222 * 4 2 1 33 33 H 1.08999 * 110.30936 * 358.34540 * 4 2 1 34 34 H 1.07997 * 119.98460 * 359.97438 * 8 7 5 35 35 H 1.08002 * 120.01524 * 180.25598 * 9 8 7 36 36 H 1.07998 * 120.01421 * 179.97438 * 12 10 9 37 37 H 1.08005 * 119.97968 * 179.97438 * 13 12 10 38 38 H 1.09009 * 110.66683 * 278.97759 * 14 5 4 39 39 H 1.09000 * 110.67025 * 155.85054 * 14 5 4 40 40 H 1.08998 * 109.47187 * 56.70742 * 16 15 2 41 41 H 1.09002 * 109.47148 * 296.70793 * 16 15 2 42 42 H 0.97003 * 119.99248 * 359.97438 * 19 17 16 43 43 H 1.09008 * 109.47202 * 59.99316 * 20 19 17 44 44 H 1.09007 * 109.47178 * 299.99747 * 20 19 17 45 45 H 0.96994 * 120.00149 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7502 -1.2382 5 6 2.9058 -1.9117 -0.6761 6 1 2.3214 -2.8306 -0.6288 7 6 4.1494 -2.1151 -1.5026 8 6 5.0125 -1.0580 -1.7234 9 6 6.1562 -1.2447 -2.4765 10 6 6.4314 -2.4883 -3.0196 11 9 7.5459 -2.6703 -3.7614 12 6 5.5633 -3.5449 -2.8025 13 6 4.4236 -3.3573 -2.0437 14 6 3.2681 -1.4185 0.7473 15 7 2.0338 -0.7204 1.1894 16 6 2.3212 0.2124 2.2873 17 6 2.7541 -0.5629 3.5048 18 8 2.7089 -1.7749 3.4997 19 7 3.1912 0.0905 4.5996 20 6 3.6116 -0.6632 5.7834 21 6 4.0531 0.2957 6.8588 22 1 4.0239 1.3601 6.6784 23 6 4.4942 -0.1858 8.0732 24 7 4.5246 -1.4818 8.2949 25 14 5.0408 1.0029 9.4064 26 1 3.9116 1.8985 9.7645 27 1 5.4670 0.2389 10.6064 28 1 6.1790 1.8163 8.9081 29 1 -0.3634 0.5177 0.8878 30 1 -0.3633 0.5099 -0.8922 31 1 -0.3633 -1.0277 0.0046 32 1 2.6713 -0.0896 -1.8476 33 1 1.2228 -1.1402 -1.8249 34 1 4.7950 -0.0869 -1.3039 35 1 6.8325 -0.4197 -2.6454 36 1 5.7767 -4.5151 -3.2261 37 1 3.7462 -4.1813 -1.8746 38 1 4.1098 -0.7267 0.7122 39 1 3.4888 -2.2615 1.4020 40 1 1.4240 0.7854 2.5215 41 1 3.1185 0.8923 1.9871 42 1 3.2275 1.0598 4.6036 43 1 4.4405 -1.3204 5.5204 44 1 2.7764 -1.2605 6.1494 45 1 4.8346 -1.8205 9.1492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736629930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:12 Heat of formation + Delta-G solvation = -60.052039 kcal Electronic energy + Delta-G solvation = -26234.154493 eV Core-core repulsion = 22358.433027 eV Total energy + Delta-G solvation = -3875.721466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.10050 -40.32076 -39.00054 -37.85503 -34.16516 -33.29966 -32.31060 -31.80412 -31.41773 -29.25314 -27.76503 -26.09245 -25.25603 -23.53063 -22.90370 -22.22512 -20.58269 -20.06339 -19.62938 -17.97163 -17.19435 -16.66233 -16.37609 -15.80450 -15.72105 -15.30500 -15.08956 -14.91038 -14.83813 -14.27353 -14.18465 -13.82930 -13.72381 -13.45293 -13.28694 -13.04608 -12.76399 -12.52847 -12.36686 -11.99483 -11.95251 -11.76670 -11.66660 -11.34081 -11.24948 -11.06294 -10.99642 -10.88975 -10.79961 -10.65638 -10.31344 -9.41208 -9.37146 -9.00501 -8.75229 -8.72677 -8.33684 -7.85282 -6.16654 -4.23735 0.87374 0.96972 3.24675 3.29428 3.29544 3.30944 3.40057 3.65588 4.01828 4.17456 4.34413 4.39223 4.53698 4.60621 4.66215 4.70144 4.92638 4.99758 5.02156 5.19151 5.19502 5.29173 5.35675 5.37334 5.40544 5.58428 5.61474 5.61927 5.68629 5.75599 5.80039 5.85178 5.88019 5.94080 6.02583 6.14084 6.25667 6.35277 6.63011 6.89960 6.97122 7.32660 7.45894 7.52638 7.67594 7.97483 8.64257 8.79294 9.13594 9.43086 10.93510 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.002648 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.263110 B =10571.785956 C =11979.956002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 H 0.052 0.948 4 C -0.118 4.118 5 C -0.054 4.054 6 H 0.095 0.905 7 C -0.077 4.077 8 C -0.087 4.087 9 C -0.151 4.151 10 C 0.089 3.911 11 F -0.143 7.143 12 C -0.151 4.151 13 C -0.085 4.085 14 C 0.047 3.953 15 N -0.491 5.491 16 C 0.027 3.973 17 C 0.498 3.502 18 O -0.538 6.538 19 N -0.716 5.716 20 C 0.252 3.748 21 C -0.544 4.544 22 H 0.062 0.938 23 C 0.064 3.936 24 N -0.885 5.885 25 Si 0.904 3.096 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.043 0.957 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.389 0.611 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 2.715 -24.281 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 H 0.070 0.930 4 C -0.156 4.156 5 C -0.073 4.073 6 H 0.113 0.887 7 C -0.077 4.077 8 C -0.105 4.105 9 C -0.169 4.169 10 C 0.070 3.930 11 F -0.122 7.122 12 C -0.170 4.170 13 C -0.103 4.103 14 C -0.080 4.080 15 N -0.215 5.215 16 C -0.104 4.104 17 C 0.282 3.718 18 O -0.415 6.415 19 N -0.365 5.365 20 C 0.132 3.868 21 C -0.582 4.582 22 H 0.080 0.920 23 C -0.140 4.140 24 N -0.523 5.523 25 Si 0.731 3.269 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.061 0.939 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.221 0.779 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.126 1.314 -23.922 24.161 hybrid contribution 1.244 1.702 0.493 2.165 sum -1.882 3.016 -23.429 23.697 Atomic orbital electron populations 1.21755 0.93789 1.02596 1.01113 1.22438 0.96587 0.96126 0.89785 0.92998 1.22602 0.99543 0.96503 0.96925 1.21082 0.92741 0.99907 0.93538 0.88706 1.19869 0.96546 0.93418 0.97901 1.20866 0.93131 0.99280 0.97177 1.21128 0.99239 0.96285 1.00291 1.17735 0.84789 0.95002 0.95438 1.91496 1.50146 1.96006 1.74508 1.21145 0.95365 0.98707 1.01764 1.20974 0.96339 0.97055 0.95900 1.23401 0.90692 0.99591 0.94337 1.64472 1.27238 1.24986 1.04849 1.22219 1.01544 0.94535 0.92119 1.20253 0.78658 0.88585 0.84320 1.90647 1.54251 1.13829 1.82780 1.46458 1.64480 1.10257 1.15329 1.19064 0.95430 0.91956 0.80392 1.21191 1.45412 0.93028 0.98614 0.92005 1.24952 0.95298 0.95343 0.98410 1.69963 1.45769 1.12006 1.24531 0.86481 0.79062 0.80615 0.80779 1.20060 1.21056 1.20092 0.92620 0.92646 0.91725 0.91181 0.90487 0.85199 0.84811 0.84759 0.84783 0.93880 0.88011 0.88246 0.92554 0.77897 0.95677 0.95565 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.32 37.16 0.35 -0.89 16 2 C 0.06 0.59 3.09 -66.65 -0.21 0.38 16 3 H 0.05 0.48 7.77 -51.93 -0.40 0.07 16 4 C -0.12 -1.02 6.03 -25.38 -0.15 -1.17 16 5 C -0.05 -0.55 3.27 -89.92 -0.29 -0.84 16 6 H 0.09 0.97 7.95 -51.92 -0.41 0.56 16 7 C -0.08 -0.75 4.95 -104.62 -0.52 -1.26 16 8 C -0.09 -0.81 8.13 -39.59 -0.32 -1.13 16 9 C -0.15 -1.43 10.03 -39.51 -0.40 -1.82 16 10 C 0.09 0.92 7.30 -39.42 -0.29 0.63 16 11 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 12 C -0.15 -1.40 10.03 -39.51 -0.40 -1.80 16 13 C -0.08 -0.77 9.68 -39.59 -0.38 -1.15 16 14 C 0.05 0.63 5.17 -1.90 -0.01 0.62 16 15 N -0.49 -6.61 4.62 -224.01 -1.03 -7.65 16 16 C 0.03 0.39 5.18 -4.98 -0.03 0.36 16 17 C 0.50 9.75 7.51 -10.99 -0.08 9.67 16 18 O -0.54 -12.71 14.82 5.56 0.08 -12.62 16 19 N -0.72 -14.87 5.55 -61.47 -0.34 -15.21 16 20 C 0.25 6.67 5.43 -5.20 -0.03 6.64 16 21 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 22 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 25 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.54 6.81 -51.93 -0.35 0.19 16 33 H 0.08 0.60 7.69 -51.93 -0.40 0.20 16 34 H 0.13 1.07 7.28 -52.49 -0.38 0.68 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.13 0.99 7.98 -52.48 -0.42 0.57 16 38 H 0.04 0.55 6.86 -51.92 -0.36 0.20 16 39 H 0.10 1.69 6.85 -51.93 -0.36 1.34 16 40 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.68 7.99 -51.93 -0.41 0.27 16 42 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 43 H 0.03 0.74 8.14 -51.92 -0.42 0.31 16 44 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 372.60 15.07 5.61 5.61 Total: -1.00 -32.24 372.60 -9.85 -42.09 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.75 Total: 4.06 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.17 Total: -5.14 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.64 Total: -48.24 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.24 -9.85 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736629930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.960 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds