Wall clock time and date at job start Tue Mar 31 2020 13:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.50050 * 2 1 4 4 C 1.53195 * 109.49650 * 120.05970 * 2 1 3 5 5 N 1.46930 * 108.77756 * 174.62189 * 4 2 1 6 6 C 1.36937 * 120.62781 * 126.41146 * 5 4 2 7 7 H 1.07993 * 120.00440 * 332.77802 * 6 5 4 8 8 C 1.38821 * 119.99308 * 152.77950 * 6 5 4 9 9 N 1.31620 * 119.99540 * 159.75401 * 8 6 5 10 10 Si 1.86803 * 120.00043 * 339.75066 * 8 6 5 11 11 H 1.48495 * 109.46938 * 94.89668 * 10 8 6 12 12 H 1.48498 * 109.46531 * 214.89521 * 10 8 6 13 13 H 1.48498 * 109.47185 * 334.89263 * 10 8 6 14 14 C 1.46926 * 118.73480 * 306.39215 * 5 4 2 15 15 C 1.53190 * 108.77788 * 53.60723 * 14 5 4 16 16 C 1.53036 * 109.31285 * 305.36334 * 15 14 5 17 17 H 1.09003 * 109.46042 * 181.37721 * 16 15 14 18 18 N 1.46498 * 109.44964 * 301.35122 * 16 15 14 19 19 C 1.34769 * 119.99844 * 275.06149 * 18 16 15 20 20 O 1.21285 * 120.00017 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99921 * 180.02562 * 19 18 16 22 22 C 1.50697 * 109.47093 * 180.02562 * 21 19 18 23 23 C 1.38272 * 119.98758 * 269.72023 * 22 21 19 24 24 C 1.38221 * 120.05202 * 179.76775 * 23 22 21 25 25 C 1.38226 * 120.02454 * 0.51099 * 24 23 22 26 26 C 1.38438 * 119.97593 * 359.74283 * 25 24 23 27 27 F 1.35096 * 120.02567 * 179.97438 * 26 25 24 28 28 C 1.38181 * 119.99033 * 90.00026 * 22 21 19 29 29 H 1.08995 * 109.47353 * 299.94430 * 1 2 3 30 30 H 1.09004 * 109.46590 * 59.93870 * 1 2 3 31 31 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.58877 * 54.82991 * 4 2 1 33 33 H 1.09002 * 109.70037 * 294.47770 * 4 2 1 34 34 H 0.97005 * 119.99299 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.58190 * 173.39497 * 14 5 4 36 36 H 1.09003 * 109.58426 * 293.81700 * 14 5 4 37 37 H 1.09005 * 109.49351 * 65.31489 * 15 14 5 38 38 H 1.08993 * 109.49762 * 185.41218 * 15 14 5 39 39 H 0.97000 * 119.99520 * 95.06459 * 18 16 15 40 40 H 1.08998 * 109.46818 * 299.99549 * 21 19 18 41 41 H 1.08998 * 109.47402 * 59.99528 * 21 19 18 42 42 H 1.08000 * 119.97011 * 0.02562 * 23 22 21 43 43 H 1.08004 * 119.99059 * 180.25056 * 24 23 22 44 44 H 1.07993 * 120.01178 * 179.76784 * 25 24 23 45 45 H 1.08003 * 120.00735 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2499 5 7 3.5047 -0.8280 1.1704 6 6 4.2930 -0.3776 2.1955 7 1 3.9424 0.4170 2.8374 8 6 5.5429 -0.9424 2.4095 9 7 6.4523 -0.2862 3.0986 10 14 5.9341 -2.6337 1.7195 11 1 6.6144 -2.4879 0.4077 12 1 6.8247 -3.3584 2.6612 13 1 4.6741 -3.3992 1.5415 14 6 4.1060 -1.4255 -0.0297 15 6 3.5716 -0.6943 -1.2652 16 6 2.0416 -0.7231 -1.2480 17 1 1.6589 -0.2247 -2.1387 18 7 1.5800 -2.1134 -1.2302 19 6 1.4526 -2.7959 -2.3853 20 8 1.7196 -2.2590 -3.4396 21 6 0.9773 -4.2259 -2.3670 22 6 0.9230 -4.7552 -3.7769 23 6 -0.2368 -4.6277 -4.5189 24 6 -0.2864 -5.1085 -5.8138 25 6 0.8202 -5.7268 -6.3650 26 6 1.9803 -5.8597 -5.6213 27 9 3.0622 -6.4643 -6.1588 28 6 2.0305 -5.3730 -4.3258 29 1 -0.3634 0.5129 0.8904 30 1 -0.3633 0.5148 -0.8895 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6056 -1.7213 1.2984 33 1 1.7631 -0.1596 2.1403 34 1 7.3256 -0.6811 3.2484 35 1 5.1902 -1.3228 0.0152 36 1 3.8387 -2.4808 -0.0855 37 1 3.9162 0.3398 -1.2533 38 1 3.9346 -1.1889 -2.1660 39 1 1.3661 -2.5426 -0.3870 40 1 1.6673 -4.8306 -1.7786 41 1 -0.0168 -4.2727 -1.9224 42 1 -1.1032 -4.1484 -4.0876 43 1 -1.1916 -5.0048 -6.3939 44 1 0.7799 -6.1057 -7.3755 45 1 2.9350 -5.4761 -3.7447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944700607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:18 Heat of formation + Delta-G solvation = -39.042716 kcal Electronic energy + Delta-G solvation = -27327.014835 eV Core-core repulsion = 23452.204401 eV Total energy + Delta-G solvation = -3874.810434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.03525 -40.31581 -39.16351 -37.75038 -34.45862 -33.14402 -32.56397 -31.59634 -30.77412 -30.40353 -27.91867 -26.36686 -25.17583 -22.99624 -22.60742 -21.84286 -21.57566 -20.49904 -18.90774 -17.58402 -17.17955 -16.76892 -16.62136 -16.37071 -15.72576 -15.60995 -15.14191 -15.09534 -14.48626 -14.15327 -13.98751 -13.79627 -13.65328 -13.47336 -13.36780 -13.24521 -12.57667 -12.36548 -12.28159 -12.20014 -11.88584 -11.77974 -11.61312 -11.54169 -11.32427 -11.26530 -10.69553 -10.58147 -10.24905 -10.00182 -9.82715 -9.71929 -9.52217 -9.14910 -8.85616 -8.84617 -8.61064 -7.02625 -5.99082 -3.35622 0.93697 1.01097 2.72419 3.16717 3.29890 3.43276 3.45956 3.57325 4.02589 4.36392 4.48619 4.51791 4.78129 4.83951 4.89649 4.94976 5.03135 5.05565 5.18841 5.21743 5.26812 5.30126 5.40272 5.60875 5.67217 5.80650 5.83598 5.84170 5.90106 5.93144 5.99638 6.06143 6.12047 6.22681 6.24569 6.32364 6.39673 6.54611 6.59923 6.65100 6.68355 6.73241 6.90135 7.65507 7.90869 8.28214 8.34265 8.88752 9.67392 10.04049 11.16798 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.003578 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.904902 B = 7822.840356 C = 9107.793497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 H 0.086 0.914 4 C 0.155 3.845 5 N -0.605 5.605 6 C -0.262 4.262 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.884 3.116 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.271 1.271 14 C 0.130 3.870 15 C -0.147 4.147 16 C 0.161 3.839 17 H 0.078 0.922 18 N -0.716 5.716 19 C 0.513 3.487 20 O -0.537 6.537 21 C -0.108 4.108 22 C -0.031 4.031 23 C -0.116 4.116 24 C -0.090 4.090 25 C -0.157 4.157 26 C 0.099 3.901 27 F -0.141 7.141 28 C -0.139 4.139 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.018 0.982 33 H 0.066 0.934 34 H 0.263 0.737 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.401 0.599 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.257 -9.261 -13.702 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 H 0.104 0.896 4 C 0.029 3.971 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.103 0.897 8 C -0.175 4.175 9 N -0.550 5.550 10 Si 0.715 3.285 11 H -0.218 1.218 12 H -0.232 1.232 13 H -0.196 1.196 14 C 0.004 3.996 15 C -0.187 4.187 16 C 0.056 3.944 17 H 0.097 0.903 18 N -0.368 5.368 19 C 0.299 3.701 20 O -0.414 6.414 21 C -0.148 4.148 22 C -0.031 4.031 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.176 4.176 26 C 0.080 3.920 27 F -0.120 7.120 28 C -0.158 4.158 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.236 0.764 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.840 -8.872 -14.362 23.150 hybrid contribution 0.630 -1.249 -0.033 1.399 sum -15.210 -10.121 -14.395 23.259 Atomic orbital electron populations 1.21751 0.95411 1.01361 1.01367 1.21945 0.94877 1.01024 0.96204 0.89574 1.20930 0.84486 0.96478 0.95215 1.44359 1.00620 1.71971 1.15901 1.18909 0.97826 1.14218 1.08011 0.89654 1.25269 0.96420 0.98063 0.97731 1.69835 1.04545 1.37153 1.43504 0.86928 0.77657 0.86865 0.77061 1.21787 1.23205 1.19623 1.21272 0.97896 0.94548 0.85868 1.22394 0.94844 1.02306 0.99170 1.20886 0.94381 0.80718 0.98374 0.90346 1.46160 1.67496 1.14371 1.08752 1.20324 0.77935 0.87728 0.84131 1.90717 1.50009 1.70063 1.30630 1.20744 1.04601 0.94482 0.95009 1.19113 0.93096 0.95952 0.94965 1.21050 0.97923 0.99963 0.94495 1.20945 0.97911 0.96891 0.95107 1.21121 0.92641 1.03074 1.00787 1.17642 0.84095 0.97628 0.92674 1.91499 1.53351 1.80999 1.86136 1.21009 0.99750 1.00650 0.94419 0.92530 0.93140 0.93051 0.96446 0.91509 0.92738 0.91196 0.95787 0.90791 0.92275 0.76374 0.87624 0.87537 0.85451 0.85020 0.84922 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.06 37.16 0.34 -1.28 16 2 C -0.12 -1.75 2.67 -90.50 -0.24 -2.00 16 3 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 4 C 0.16 2.72 5.50 -3.71 -0.02 2.70 16 5 N -0.61 -13.50 2.77 -172.31 -0.48 -13.98 16 6 C -0.26 -7.06 10.04 -15.06 -0.15 -7.21 16 7 H 0.09 2.46 8.05 -52.49 -0.42 2.04 16 8 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 9 N -0.91 -27.51 13.97 55.49 0.78 -26.74 16 10 Si 0.88 22.11 24.35 -169.99 -4.14 17.97 16 11 H -0.29 -7.17 6.70 56.52 0.38 -6.79 16 12 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 13 H -0.27 -6.49 6.45 56.52 0.36 -6.13 16 14 C 0.13 2.75 3.93 -3.71 -0.01 2.73 16 15 C -0.15 -2.66 5.77 -26.61 -0.15 -2.82 16 16 C 0.16 2.45 2.21 -67.89 -0.15 2.30 16 17 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 18 N -0.72 -9.57 3.60 -53.77 -0.19 -9.76 16 19 C 0.51 6.94 7.79 -10.99 -0.09 6.85 16 20 O -0.54 -9.27 15.70 5.55 0.09 -9.18 16 21 C -0.11 -1.06 5.83 -29.04 -0.17 -1.23 16 22 C -0.03 -0.33 4.37 -104.63 -0.46 -0.79 16 23 C -0.12 -1.12 9.70 -39.57 -0.38 -1.50 16 24 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 25 C -0.16 -1.55 10.03 -39.51 -0.40 -1.94 16 26 C 0.10 1.17 7.30 -39.42 -0.29 0.88 16 27 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 28 C -0.14 -1.66 9.68 -39.51 -0.38 -2.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.54 7.54 -51.93 -0.39 0.14 16 32 H 0.02 0.28 6.64 -51.93 -0.34 -0.06 16 33 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.07 1.68 4.50 -51.93 -0.23 1.44 16 36 H 0.02 0.50 6.57 -51.93 -0.34 0.16 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.40 4.83 6.73 -40.82 -0.27 4.56 16 40 H 0.11 0.91 8.08 -51.93 -0.42 0.49 16 41 H 0.11 0.73 8.08 -51.93 -0.42 0.31 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -32.65 360.04 -8.18 -40.83 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.65 Total: 3.13 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -3.05 Total: -5.94 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.10 Total: -50.48 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.65 -8.18 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944700607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.786 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds