Wall clock time and date at job start Tue Mar 31 2020 12:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.45746 * 2 1 4 4 C 1.53045 * 109.44486 * 119.96233 * 2 1 3 5 5 C 1.53193 * 109.31133 * 58.65265 * 4 2 1 6 6 N 1.46918 * 108.77757 * 54.63291 * 5 4 2 7 7 C 1.34773 * 120.63083 * 126.41330 * 6 5 4 8 8 O 1.21577 * 120.00120 * 175.80435 * 7 6 5 9 9 C 1.47690 * 120.00189 * 355.80691 * 7 6 5 10 10 C 1.39656 * 120.16759 * 54.16826 * 9 7 6 11 11 C 1.37852 * 119.88048 * 179.97438 * 10 9 7 12 12 C 1.38461 * 120.21778 * 0.02999 * 11 10 9 13 13 C 1.38201 * 120.34202 * 359.97364 * 12 11 10 14 14 C 1.38325 * 120.11372 * 359.74167 * 13 12 11 15 15 F 1.35102 * 120.11278 * 180.27578 * 14 13 12 16 16 C 1.46924 * 118.74102 * 306.38934 * 6 5 4 17 17 C 1.53033 * 109.46126 * 240.02439 * 2 1 3 18 18 H 1.09002 * 109.49933 * 181.40720 * 17 2 1 19 19 C 1.53001 * 109.49974 * 61.34291 * 17 2 1 20 20 N 1.46502 * 109.47196 * 175.06473 * 19 17 2 21 21 C 1.36937 * 119.99511 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00340 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99527 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00273 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99871 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47225 * 60.00170 * 25 23 21 27 27 H 1.48505 * 109.46923 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47119 * 299.99957 * 25 23 21 29 29 H 1.08998 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47054 * 299.97429 * 1 2 3 31 31 H 1.08994 * 109.46646 * 59.97731 * 1 2 3 32 32 H 1.09008 * 109.49192 * 178.60055 * 4 2 1 33 33 H 1.08998 * 109.49904 * 298.69491 * 4 2 1 34 34 H 1.08999 * 109.58529 * 174.41905 * 5 4 2 35 35 H 1.09001 * 109.58693 * 294.69824 * 5 4 2 36 36 H 1.07994 * 120.06029 * 359.96522 * 10 9 7 37 37 H 1.07996 * 119.89717 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.83199 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.94640 * 179.97438 * 13 12 11 40 40 H 1.09004 * 109.58714 * 293.82822 * 16 6 5 41 41 H 1.08994 * 109.59243 * 173.39719 * 16 6 5 42 42 H 1.09007 * 109.46702 * 295.06425 * 19 17 2 43 43 H 1.08995 * 109.47041 * 55.06121 * 19 17 2 44 44 H 0.96999 * 120.00115 * 359.97438 * 20 19 17 45 45 H 0.97004 * 120.00050 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7208 1.2503 5 6 1.4990 -2.1541 1.2644 6 7 1.8621 -2.8089 0.0003 7 6 2.5149 -3.9880 0.0005 8 8 2.7424 -4.5571 -1.0494 9 6 2.9540 -4.5888 1.2763 10 6 2.0346 -4.7992 2.3062 11 6 2.4508 -5.3608 3.4943 12 6 3.7774 -5.7164 3.6700 13 6 4.6949 -5.5122 2.6569 14 6 4.2914 -4.9551 1.4569 15 9 5.1873 -4.7606 0.4646 16 6 1.4994 -2.1543 -1.2640 17 6 2.0400 -0.7209 -1.2499 18 1 3.1297 -0.7432 -1.2380 19 6 1.5580 0.0197 -2.4990 20 7 2.1423 -0.6008 -3.6905 21 6 1.8514 -0.1046 -4.9333 22 1 1.1916 0.7443 -5.0349 23 6 2.4055 -0.6922 -6.0622 24 7 3.2101 -1.7265 -5.9383 25 14 2.0094 -0.0149 -7.7575 26 1 2.4467 1.4018 -7.8392 27 1 2.7207 -0.8133 -8.7881 28 1 0.5454 -0.0955 -7.9930 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3632 0.5142 -0.8898 32 1 3.1294 -0.7430 1.2386 33 1 1.6955 -0.1933 2.1399 34 1 1.9374 -2.7017 2.0987 35 1 0.4143 -2.1345 1.3699 36 1 0.9994 -4.5222 2.1721 37 1 1.7399 -5.5240 4.2907 38 1 4.0967 -6.1556 4.6036 39 1 5.7282 -5.7916 2.8010 40 1 0.4145 -2.1346 -1.3673 41 1 1.9380 -2.7020 -2.0981 42 1 0.4708 -0.0350 -2.5569 43 1 1.8669 1.0635 -2.4443 44 1 2.7352 -1.3631 -3.5992 45 1 3.5970 -2.1373 -6.7273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132606607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:22 Heat of formation + Delta-G solvation = -40.694560 kcal Electronic energy + Delta-G solvation = -27610.043297 eV Core-core repulsion = 23735.161234 eV Total energy + Delta-G solvation = -3874.882063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.00723 -40.63516 -38.98177 -37.77571 -34.94578 -33.55862 -32.01004 -31.51367 -30.81692 -29.74299 -27.64682 -25.82494 -25.01177 -23.47177 -23.24551 -22.78706 -21.17531 -20.15434 -18.47569 -17.61418 -17.42900 -16.89673 -16.66621 -16.20447 -15.57986 -15.39918 -14.93277 -14.90384 -14.82853 -14.48640 -14.18456 -13.70160 -13.55769 -13.42957 -13.08147 -12.96809 -12.79272 -12.58869 -12.43563 -12.23017 -11.88921 -11.64449 -11.59471 -11.22856 -11.04559 -10.88538 -10.75480 -10.61704 -10.28439 -10.16885 -9.97011 -9.78434 -9.56431 -9.30937 -9.04204 -8.79831 -8.45204 -6.84022 -5.66600 -2.96666 0.58309 0.82524 2.63765 2.95908 3.30959 3.49494 3.53244 3.55252 3.94125 4.24433 4.42459 4.54410 4.63151 4.72102 4.81608 4.86092 4.92377 4.93496 5.18762 5.25466 5.33538 5.37902 5.55295 5.63187 5.65381 5.67925 5.69425 5.71419 5.81461 5.83822 5.91471 5.95634 5.97375 6.03524 6.17854 6.34124 6.36273 6.38435 6.45546 6.59338 6.66570 6.80755 6.92504 7.45207 7.76294 8.21352 8.50845 9.61603 10.19867 10.53908 11.55528 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.003509 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.826629 B = 7976.830650 C = 9189.122139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.129 4.129 5 C 0.098 3.902 6 N -0.601 5.601 7 C 0.554 3.446 8 O -0.513 6.513 9 C -0.155 4.155 10 C -0.064 4.064 11 C -0.137 4.137 12 C -0.075 4.075 13 C -0.159 4.159 14 C 0.146 3.854 15 F -0.122 7.122 16 C 0.120 3.880 17 C -0.103 4.103 18 H 0.073 0.927 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.243 4.243 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 -4.392 26.627 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.167 4.167 5 C -0.025 4.025 6 N -0.334 5.334 7 C 0.340 3.660 8 O -0.388 6.388 9 C -0.159 4.159 10 C -0.083 4.083 11 C -0.155 4.155 12 C -0.093 4.093 13 C -0.178 4.178 14 C 0.125 3.875 15 F -0.100 7.100 16 C -0.001 4.001 17 C -0.122 4.122 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.374 4.374 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.861 -4.601 25.846 26.408 hybrid contribution 0.225 0.203 -1.089 1.131 sum -2.635 -4.399 24.757 25.282 Atomic orbital electron populations 1.21986 0.95200 1.01950 1.01824 1.21078 0.96025 0.99414 0.93886 0.90777 1.21946 1.01215 0.95020 0.98517 1.21996 1.00318 0.93966 0.86243 1.48057 1.56838 1.20430 1.08057 1.18086 0.78371 0.81311 0.88196 1.90899 1.54846 1.60859 1.32222 1.20095 0.93543 1.05653 0.96623 1.21206 0.99215 0.96288 0.91548 1.21145 0.96371 1.00284 0.97714 1.21164 0.92778 0.96984 0.98414 1.21158 1.01750 1.02560 0.92330 1.17704 0.85825 0.97908 0.86017 1.91601 1.66300 1.92326 1.59767 1.21795 1.00042 0.92959 0.85272 1.21697 1.00940 0.94314 0.95260 0.90820 1.20672 0.95965 0.94703 0.85331 1.42421 1.56940 1.37636 1.00804 1.19147 1.23445 1.11028 0.83799 0.91307 1.24761 1.00015 0.98299 0.97798 1.69668 1.35319 1.24082 1.28637 0.86288 0.77609 0.77976 0.84401 1.21350 1.21711 1.21312 0.92473 0.93131 0.91735 0.91546 0.90811 0.89673 0.90880 0.84409 0.84705 0.84623 0.84085 0.91122 0.87854 0.95932 0.96164 0.78108 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.11 37.16 0.30 -1.39 16 2 C -0.08 -1.05 2.71 -90.57 -0.25 -1.30 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.13 -1.32 5.63 -26.61 -0.15 -1.47 16 5 C 0.10 1.00 5.05 -3.71 -0.02 0.98 16 6 N -0.60 -8.82 2.97 -173.94 -0.52 -9.34 16 7 C 0.55 9.32 6.92 -12.40 -0.09 9.24 16 8 O -0.51 -11.26 16.28 5.30 0.09 -11.18 16 9 C -0.16 -2.01 4.89 -104.91 -0.51 -2.53 16 10 C -0.06 -0.57 7.43 -39.19 -0.29 -0.86 16 11 C -0.14 -0.90 10.03 -39.64 -0.40 -1.30 16 12 C -0.08 -0.50 10.03 -39.51 -0.40 -0.90 16 13 C -0.16 -1.44 10.01 -39.56 -0.40 -1.84 16 14 C 0.15 1.90 7.27 -38.95 -0.28 1.61 16 15 F -0.12 -1.97 16.65 2.25 0.04 -1.94 16 16 C 0.12 2.09 5.04 -3.71 -0.02 2.07 16 17 C -0.10 -1.71 2.15 -90.50 -0.19 -1.91 16 18 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 19 C 0.16 3.28 5.19 -4.04 -0.02 3.26 16 20 N -0.73 -19.28 5.38 -59.91 -0.32 -19.60 16 21 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -29.48 13.06 55.49 0.72 -28.76 16 25 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H 0.06 0.63 4.98 -51.93 -0.26 0.37 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.79 6.58 -51.93 -0.34 0.45 16 32 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.74 4.73 -51.93 -0.25 0.49 16 35 H 0.07 0.63 6.70 -51.93 -0.35 0.29 16 36 H 0.14 1.00 7.36 -52.49 -0.39 0.61 16 37 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.07 1.16 6.69 -51.93 -0.35 0.81 16 41 H 0.10 2.26 6.24 -51.93 -0.32 1.94 16 42 H 0.02 0.46 6.73 -51.93 -0.35 0.11 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.38 10.90 6.90 -40.82 -0.28 10.62 16 45 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -35.69 357.24 -8.82 -44.51 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.23 Total: 6.77 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.96 Total: -3.97 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.11 Total: -57.70 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.69 -8.82 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132606607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.814 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds