Wall clock time and date at job start Tue Mar 31 2020 14:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47318 * 2 1 4 4 C 1.52996 * 109.46962 * 239.99340 * 2 1 3 5 5 N 1.46513 * 109.46962 * 185.00298 * 4 2 1 6 6 C 1.36930 * 119.99774 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00437 * 0.02562 * 6 5 4 8 8 C 1.38820 * 119.99802 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99984 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00012 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.46787 * 89.99734 * 10 8 6 12 12 H 1.48492 * 109.47067 * 210.00028 * 10 8 6 13 13 H 1.48505 * 109.46910 * 330.00252 * 10 8 6 14 14 N 1.46501 * 109.47043 * 119.99438 * 2 1 3 15 15 C 1.46503 * 119.99890 * 59.99673 * 14 2 1 16 16 C 1.34777 * 120.00501 * 240.00291 * 14 2 1 17 17 O 1.21282 * 119.99525 * 359.97438 * 16 14 2 18 18 C 1.50697 * 120.00309 * 179.97438 * 16 14 2 19 19 C 1.50697 * 109.47233 * 179.97438 * 18 16 14 20 20 C 1.32574 * 120.00288 * 127.45454 * 19 18 16 21 21 C 1.47804 * 119.99716 * 7.59684 * 20 19 18 22 22 C 1.39543 * 120.11467 * 218.63992 * 21 20 19 23 23 C 1.37931 * 119.88348 * 179.73979 * 22 21 20 24 24 C 1.38581 * 120.11265 * 0.53291 * 23 22 21 25 25 F 1.35099 * 119.87991 * 179.74394 * 24 23 22 26 26 C 1.38577 * 120.23131 * 359.71669 * 24 23 22 27 27 C 1.37920 * 120.11642 * 0.02679 * 26 24 23 28 28 H 1.09001 * 109.46596 * 60.00232 * 1 2 3 29 29 H 1.08998 * 109.46938 * 300.00698 * 1 2 3 30 30 H 1.08998 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47349 * 305.00084 * 4 2 1 32 32 H 1.08993 * 109.47410 * 65.00862 * 4 2 1 33 33 H 0.96998 * 119.99578 * 0.02562 * 5 4 2 34 34 H 0.96993 * 119.99792 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.46805 * 90.00368 * 15 14 2 36 36 H 1.09003 * 109.47396 * 209.99968 * 15 14 2 37 37 H 1.08994 * 109.47512 * 330.00502 * 15 14 2 38 38 H 1.08999 * 109.47232 * 299.99677 * 18 16 14 39 39 H 1.09004 * 109.47122 * 59.99710 * 18 16 14 40 40 H 1.08001 * 120.00371 * 307.46335 * 19 18 16 41 41 H 1.07996 * 120.00445 * 187.58934 * 20 19 18 42 42 H 1.07999 * 120.06246 * 359.97438 * 22 21 20 43 43 H 1.07997 * 119.94598 * 180.24956 * 23 22 21 44 44 H 1.07999 * 119.93544 * 180.02562 * 26 24 23 45 45 H 1.08004 * 120.05759 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 3.5001 -0.8266 -1.1904 6 6 4.1838 -1.4391 -2.2064 7 1 3.6468 -1.8444 -3.0513 8 6 5.5673 -1.5384 -2.1511 9 7 6.2246 -2.1267 -3.1279 10 14 6.4963 -0.8368 -0.6902 11 1 6.6278 -1.8790 0.3595 12 1 7.8469 -0.3999 -1.1259 13 1 5.7524 0.3260 -0.1427 14 7 2.0183 -0.6905 1.1962 15 6 1.6643 -2.0931 1.4282 16 6 2.7931 -0.0355 2.0835 17 8 3.0865 1.1255 1.8912 18 6 3.2949 -0.7456 3.3142 19 6 4.1327 0.2014 4.1342 20 6 3.8666 0.3776 5.4209 21 6 2.8617 -0.4742 6.0911 22 6 1.9979 0.0758 7.0391 23 6 1.0584 -0.7224 7.6577 24 6 0.9788 -2.0707 7.3473 25 9 0.0602 -2.8492 7.9599 26 6 1.8377 -2.6229 6.4105 27 6 2.7772 -1.8324 5.7823 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6053 -1.7199 -1.2950 32 1 1.7517 -0.1585 -2.1369 33 1 3.9824 -0.4629 -0.4314 34 1 7.1913 -2.1957 -3.0894 35 1 2.4157 -2.7376 0.9720 36 1 1.6237 -2.2850 2.5004 37 1 0.6904 -2.3001 0.9849 38 1 2.4469 -1.0877 3.9075 39 1 3.9003 -1.6024 3.0180 40 1 4.9499 0.7366 3.6736 41 1 4.3841 1.1435 5.9794 42 1 2.0624 1.1254 7.2852 43 1 0.3867 -0.2969 8.3886 44 1 1.7712 -3.6741 6.1719 45 1 3.4459 -2.2637 5.0520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753698997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:15 Heat of formation + Delta-G solvation = -17.959227 kcal Electronic energy + Delta-G solvation = -26965.989042 eV Core-core repulsion = 23092.092857 eV Total energy + Delta-G solvation = -3873.896185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.17729 -40.17196 -39.35447 -36.67894 -35.08404 -34.15864 -32.15108 -31.58039 -30.68282 -30.03081 -27.72147 -26.78583 -25.89604 -23.44258 -23.04370 -22.22798 -21.20954 -19.55230 -18.89214 -17.82658 -17.56581 -17.20879 -16.67028 -16.03308 -15.90300 -15.71848 -15.62681 -14.72757 -14.58734 -14.28556 -13.96337 -13.92039 -13.55738 -13.41285 -13.07793 -12.99303 -12.90796 -12.69255 -12.47791 -12.34124 -12.23929 -12.01104 -11.91663 -11.76381 -11.35579 -11.18406 -10.95300 -10.82399 -10.55059 -10.11759 -9.98472 -9.60554 -9.59454 -9.39853 -8.90389 -8.42018 -8.39283 -7.22410 -5.77256 -3.11822 0.56764 0.88201 2.04381 2.81421 3.18540 3.34597 3.35927 3.45538 3.47939 3.93751 4.38593 4.44227 4.53008 4.60239 4.65482 4.73810 4.88556 4.99496 5.05032 5.13009 5.24846 5.28733 5.36730 5.46389 5.50219 5.53970 5.58729 5.62755 5.70966 5.77826 5.81907 5.83764 5.84934 5.98403 6.03295 6.06877 6.22191 6.35841 6.37307 6.48842 6.58320 6.62364 6.85039 7.57217 7.99059 8.36241 8.42484 9.21965 9.94814 10.15531 11.41160 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.003430 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.696940 B = 8160.636575 C = 8803.132580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.121 3.879 3 H 0.100 0.900 4 C 0.149 3.851 5 N -0.752 5.752 6 C -0.242 4.242 7 H 0.090 0.910 8 C 0.006 3.994 9 N -0.934 5.934 10 Si 0.875 3.125 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.272 1.272 14 N -0.600 5.600 15 C 0.076 3.924 16 C 0.516 3.484 17 O -0.540 6.540 18 C -0.133 4.133 19 C -0.097 4.097 20 C -0.140 4.140 21 C -0.058 4.058 22 C -0.083 4.083 23 C -0.152 4.152 24 C 0.092 3.908 25 F -0.142 7.142 26 C -0.151 4.151 27 C -0.090 4.090 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.363 0.637 34 H 0.259 0.741 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 0.975 22.076 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.018 3.982 3 H 0.118 0.882 4 C 0.021 3.979 5 N -0.398 5.398 6 C -0.372 4.372 7 H 0.108 0.892 8 C -0.190 4.190 9 N -0.582 5.582 10 Si 0.705 3.295 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.198 1.198 14 N -0.333 5.333 15 C -0.068 4.068 16 C 0.304 3.696 17 O -0.417 6.417 18 C -0.172 4.172 19 C -0.115 4.115 20 C -0.157 4.157 21 C -0.058 4.058 22 C -0.101 4.101 23 C -0.171 4.171 24 C 0.073 3.927 25 F -0.120 7.120 26 C -0.170 4.170 27 C -0.108 4.108 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.196 0.804 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.975 1.434 21.765 24.883 hybrid contribution 0.641 0.170 0.997 1.198 sum -11.333 1.604 22.763 25.478 Atomic orbital electron populations 1.22049 0.94890 1.02192 1.02211 1.21456 0.93636 0.98509 0.84592 0.88183 1.20976 0.85727 0.97381 0.93822 1.42647 1.01289 1.71147 1.24676 1.19054 0.89883 1.29012 0.99252 0.89231 1.24633 0.96144 1.00610 0.97578 1.69697 1.07295 1.48688 1.32564 0.86657 0.79954 0.79434 0.83472 1.21135 1.21608 1.19802 1.47753 1.50649 1.12411 1.22492 1.21798 1.01901 0.82009 1.01054 1.20436 0.78147 0.86990 0.84056 1.90690 1.57378 1.17070 1.76606 1.21297 1.01014 0.99558 0.95285 1.23004 0.97779 0.96837 0.93901 1.21541 0.98837 1.00092 0.95271 1.19189 0.96412 0.93447 0.96731 1.21148 0.93893 0.99957 0.95060 1.21096 1.01250 0.92182 1.02593 1.17811 0.90179 0.89127 0.95611 1.91500 1.64361 1.74625 1.81542 1.21114 0.96879 1.01315 0.97701 1.21376 0.97892 0.92770 0.98761 0.91200 0.92623 0.92199 0.95299 0.94617 0.80412 0.93087 0.91457 0.91707 0.90841 0.87355 0.87534 0.85505 0.85428 0.84777 0.84726 0.84451 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.17 37.16 0.34 -1.52 16 2 C 0.12 1.94 2.80 -67.93 -0.19 1.75 16 3 H 0.10 1.84 6.90 -51.93 -0.36 1.48 16 4 C 0.15 2.86 5.56 -4.04 -0.02 2.83 16 5 N -0.75 -18.24 5.24 -59.91 -0.31 -18.55 16 6 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 7 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 8 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 9 N -0.93 -29.62 13.97 55.49 0.78 -28.84 16 10 Si 0.87 22.74 27.74 -169.99 -4.71 18.03 16 11 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 13 H -0.27 -7.06 6.52 56.52 0.37 -6.69 16 14 N -0.60 -9.08 2.24 -173.93 -0.39 -9.47 16 15 C 0.08 0.89 9.40 59.85 0.56 1.45 16 16 C 0.52 8.40 7.37 -10.99 -0.08 8.31 16 17 O -0.54 -10.78 15.35 5.56 0.09 -10.70 16 18 C -0.13 -1.62 3.02 -29.04 -0.09 -1.71 16 19 C -0.10 -1.17 8.71 -36.22 -0.32 -1.48 16 20 C -0.14 -1.39 9.79 -37.58 -0.37 -1.76 16 21 C -0.06 -0.54 5.13 -105.01 -0.54 -1.08 16 22 C -0.08 -0.69 9.78 -39.21 -0.38 -1.08 16 23 C -0.15 -1.27 10.01 -39.57 -0.40 -1.67 16 24 C 0.09 0.86 7.30 -39.33 -0.29 0.57 16 25 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 26 C -0.15 -1.29 10.01 -39.57 -0.40 -1.69 16 27 C -0.09 -0.79 7.31 -39.21 -0.29 -1.08 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 31 H 0.03 0.54 7.84 -51.93 -0.41 0.13 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.36 8.99 4.93 -40.82 -0.20 8.78 16 34 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 37 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 38 H 0.11 1.11 4.10 -51.93 -0.21 0.90 16 39 H 0.11 1.21 7.97 -51.93 -0.41 0.79 16 40 H 0.13 1.66 8.05 -52.49 -0.42 1.24 16 41 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 44 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.14 1.08 6.40 -52.48 -0.34 0.74 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -34.92 370.74 -7.97 -42.90 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.34 Total: 7.57 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.70 Total: -5.12 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.07 Total: -56.87 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.92 -7.97 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753698997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.939 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds