Wall clock time and date at job start Tue Mar 31 2020 14:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47300 * 2 1 4 4 C 1.52997 * 109.47168 * 120.00402 * 2 1 3 5 5 N 1.46501 * 109.47328 * 175.00059 * 4 2 1 6 6 C 1.36931 * 120.00273 * 179.97438 * 5 4 2 7 7 H 1.08004 * 120.00100 * 359.97438 * 6 5 4 8 8 C 1.38818 * 120.00263 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99711 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00098 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47209 * 90.00397 * 10 8 6 12 12 H 1.48505 * 109.47295 * 210.00018 * 10 8 6 13 13 H 1.48502 * 109.47346 * 330.00158 * 10 8 6 14 14 N 1.46507 * 109.46967 * 240.00077 * 2 1 3 15 15 C 1.46492 * 120.00291 * 299.99872 * 14 2 1 16 16 C 1.34777 * 119.99908 * 120.00290 * 14 2 1 17 17 O 1.21281 * 120.00121 * 359.97438 * 16 14 2 18 18 C 1.50696 * 119.99999 * 180.02562 * 16 14 2 19 19 C 1.50707 * 109.47197 * 179.97438 * 18 16 14 20 20 C 1.32570 * 119.99902 * 127.45867 * 19 18 16 21 21 C 1.47800 * 120.00468 * 7.58593 * 20 19 18 22 22 C 1.39541 * 120.11390 * 218.64124 * 21 20 19 23 23 C 1.37933 * 119.87749 * 179.74046 * 22 21 20 24 24 C 1.38576 * 120.11554 * 0.53768 * 23 22 21 25 25 F 1.35098 * 119.88166 * 179.74246 * 24 23 22 26 26 C 1.38568 * 120.23390 * 359.71312 * 24 23 22 27 27 C 1.37926 * 120.11919 * 0.03085 * 26 24 23 28 28 H 1.08997 * 109.46796 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47135 * 299.99469 * 1 2 3 30 30 H 1.08995 * 109.46960 * 59.99804 * 1 2 3 31 31 H 1.09003 * 109.47119 * 294.99884 * 4 2 1 32 32 H 1.08996 * 109.47323 * 54.99807 * 4 2 1 33 33 H 0.97008 * 120.00002 * 359.97438 * 5 4 2 34 34 H 0.96997 * 119.99642 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47212 * 89.99845 * 15 14 2 36 36 H 1.08998 * 109.47409 * 210.00150 * 15 14 2 37 37 H 1.09008 * 109.47054 * 330.00489 * 15 14 2 38 38 H 1.09002 * 109.47218 * 299.99654 * 18 16 14 39 39 H 1.09003 * 109.47475 * 59.99657 * 18 16 14 40 40 H 1.08004 * 119.99773 * 307.45629 * 19 18 16 41 41 H 1.08002 * 119.99466 * 187.59026 * 20 19 18 42 42 H 1.07997 * 120.06630 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.94239 * 180.25111 * 23 22 21 44 44 H 1.08002 * 119.93922 * 180.02562 * 26 24 23 45 45 H 1.08002 * 120.06453 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1839 -1.4380 2.2071 7 1 3.6469 -1.8426 3.0524 8 6 5.5673 -1.5381 2.1513 9 7 6.2218 -1.0447 1.1214 10 14 6.5001 -2.3730 3.5377 11 1 6.6318 -3.8226 3.2431 12 1 7.8508 -1.7682 3.6602 13 1 5.7593 -2.1922 4.8120 14 7 2.0183 -0.6906 -1.1962 15 6 1.6645 -2.0931 -1.4281 16 6 2.7932 -0.0356 -2.0834 17 8 3.0859 1.1256 -1.8917 18 6 3.2950 -0.7458 -3.3141 19 6 4.1319 0.2016 -4.1347 20 6 5.3538 -0.1491 -4.5107 21 6 5.8338 -1.5265 -4.2722 22 6 7.1551 -1.7500 -3.8830 23 6 7.5964 -3.0370 -3.6565 24 6 6.7333 -4.1079 -3.8256 25 9 7.1719 -5.3669 -3.6074 26 6 5.4217 -3.8918 -4.2170 27 6 4.9687 -2.6085 -4.4410 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7517 -0.1584 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 3.9824 -0.4628 0.4315 34 1 7.1885 -1.1143 1.0825 35 1 0.7376 -2.1443 -1.9994 36 1 2.4629 -2.5818 -1.9865 37 1 1.5295 -2.5969 -0.4709 38 1 3.9004 -1.6025 -3.0179 39 1 2.4470 -1.0880 -3.9074 40 1 3.7361 1.1662 -4.4164 41 1 5.9986 0.5718 -4.9913 42 1 7.8300 -0.9165 -3.7557 43 1 8.6177 -3.2108 -3.3513 44 1 4.7529 -4.7299 -4.3469 45 1 3.9462 -2.4410 -4.7456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753699000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:31 Heat of formation + Delta-G solvation = -20.571619 kcal Electronic energy + Delta-G solvation = -27429.957432 eV Core-core repulsion = 23555.947965 eV Total energy + Delta-G solvation = -3874.009467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.77988 -39.88666 -38.99631 -36.44039 -34.77304 -33.94084 -32.00104 -31.19023 -30.20122 -29.68054 -27.44518 -26.56606 -25.57368 -23.11182 -22.74279 -22.45315 -21.02494 -19.25846 -18.59910 -17.46816 -17.03754 -16.93597 -16.37109 -15.74525 -15.57323 -15.39691 -15.37613 -14.64655 -14.35115 -13.94621 -13.67080 -13.53807 -13.29210 -13.16040 -13.11453 -12.81169 -12.72458 -12.27969 -12.26700 -12.09874 -11.95330 -11.79667 -11.75971 -11.38422 -10.97153 -10.88938 -10.81835 -10.74382 -10.42454 -10.02270 -9.67486 -9.66172 -9.31520 -8.99021 -8.83235 -8.20908 -8.03818 -6.85721 -5.69389 -2.98598 0.96514 1.30947 2.35127 3.08353 3.42624 3.45668 3.50482 3.52297 3.73375 4.34864 4.62249 4.75345 4.77422 4.88369 4.92832 5.03505 5.23418 5.31720 5.36971 5.39464 5.44340 5.47931 5.56387 5.60756 5.65252 5.72167 5.83564 5.94532 5.98399 6.02859 6.08936 6.13552 6.16857 6.21895 6.24629 6.40502 6.42128 6.54177 6.62366 6.76196 6.81565 6.96671 7.03987 7.73284 7.80452 8.47665 8.62174 9.59385 10.18345 10.53906 11.52252 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008016 B = 0.005657 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.092657 B = 4948.213072 C = 7167.935303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.143 3.857 5 N -0.727 5.727 6 C -0.242 4.242 7 H 0.068 0.932 8 C -0.011 4.011 9 N -0.925 5.925 10 Si 0.903 3.097 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.598 5.598 15 C 0.082 3.918 16 C 0.522 3.478 17 O -0.540 6.540 18 C -0.127 4.127 19 C -0.106 4.106 20 C -0.127 4.127 21 C -0.059 4.059 22 C -0.072 4.072 23 C -0.147 4.147 24 C 0.095 3.905 25 F -0.143 7.143 26 C -0.154 4.154 27 C -0.091 4.091 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.019 0.981 33 H 0.386 0.614 34 H 0.253 0.747 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 -3.013 -14.843 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.371 5.371 6 C -0.373 4.373 7 H 0.086 0.914 8 C -0.207 4.207 9 N -0.573 5.573 10 Si 0.734 3.266 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.331 5.331 15 C -0.062 4.062 16 C 0.310 3.690 17 O -0.417 6.417 18 C -0.166 4.166 19 C -0.124 4.124 20 C -0.145 4.145 21 C -0.060 4.060 22 C -0.090 4.090 23 C -0.165 4.165 24 C 0.076 3.924 25 F -0.122 7.122 26 C -0.173 4.173 27 C -0.109 4.109 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.221 0.779 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.723 -2.530 -14.564 16.239 hybrid contribution 0.889 -0.749 0.824 1.425 sum -5.833 -3.279 -13.740 15.283 Atomic orbital electron populations 1.22040 0.95261 1.01965 1.01927 1.21370 0.93159 0.98544 0.84768 0.88281 1.20996 0.87187 0.96669 0.93675 1.42288 0.99629 1.70101 1.25118 1.19187 0.89432 1.29539 0.99137 0.91393 1.24728 0.96427 1.01632 0.97959 1.69692 1.07025 1.50543 1.30048 0.86257 0.79524 0.79037 0.81769 1.21828 1.21815 1.20832 1.47658 1.50774 1.12135 1.22519 1.21692 0.99632 0.82153 1.02693 1.20388 0.77526 0.86857 0.84242 1.90677 1.56947 1.17258 1.76777 1.21232 1.00761 0.99977 0.94624 1.22852 0.94692 0.99296 0.95604 1.21543 0.95905 0.93938 1.03100 1.19112 0.93597 0.93540 0.99714 1.21124 0.95287 0.96188 0.96395 1.21083 1.00516 0.92072 1.02867 1.17782 0.93535 0.79157 1.01938 1.91483 1.90015 1.38200 1.92478 1.21005 0.94396 0.98384 1.03488 1.21212 0.99506 0.91012 0.99125 0.92466 0.91520 0.92740 0.95552 0.96289 0.77925 0.93668 0.93360 0.91403 0.90421 0.86933 0.88511 0.85943 0.85652 0.84802 0.84789 0.84812 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.19 37.16 0.34 -1.63 16 2 C 0.12 2.16 2.80 -67.93 -0.19 1.97 16 3 H 0.10 1.97 6.90 -51.93 -0.36 1.62 16 4 C 0.14 2.93 5.50 -4.04 -0.02 2.91 16 5 N -0.73 -19.00 5.43 -59.91 -0.33 -19.32 16 6 C -0.24 -6.91 9.99 -15.06 -0.15 -7.07 16 7 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 9 N -0.92 -28.64 13.06 55.49 0.72 -27.92 16 10 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 N -0.60 -9.85 2.24 -173.93 -0.39 -10.24 16 15 C 0.08 1.08 9.30 59.84 0.56 1.63 16 16 C 0.52 9.26 7.37 -10.99 -0.08 9.18 16 17 O -0.54 -11.62 15.35 5.56 0.09 -11.53 16 18 C -0.13 -1.73 3.02 -29.03 -0.09 -1.82 16 19 C -0.11 -1.42 8.71 -36.21 -0.32 -1.73 16 20 C -0.13 -1.62 9.78 -37.58 -0.37 -1.99 16 21 C -0.06 -0.80 5.13 -105.01 -0.54 -1.34 16 22 C -0.07 -1.00 9.78 -39.21 -0.38 -1.38 16 23 C -0.15 -2.07 10.01 -39.57 -0.40 -2.46 16 24 C 0.10 1.37 7.30 -39.34 -0.29 1.08 16 25 F -0.14 -2.14 17.26 2.25 0.04 -2.10 16 26 C -0.15 -1.93 10.01 -39.57 -0.40 -2.33 16 27 C -0.09 -1.10 7.31 -39.21 -0.29 -1.38 16 28 H 0.06 0.66 7.67 -51.93 -0.40 0.27 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.38 6.88 -51.93 -0.36 0.02 16 33 H 0.39 10.99 7.06 -40.82 -0.29 10.70 16 34 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.85 6.44 -51.93 -0.33 0.52 16 37 H 0.08 1.10 6.53 -51.92 -0.34 0.76 16 38 H 0.11 1.64 4.10 -51.93 -0.21 1.43 16 39 H 0.10 0.97 7.97 -51.93 -0.41 0.56 16 40 H 0.12 1.56 8.05 -52.48 -0.42 1.14 16 41 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.13 1.28 6.40 -52.49 -0.34 0.95 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -34.72 373.88 -8.35 -43.07 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -6.39 Total: 11.27 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.70 Total: -6.78 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.01 Total: -57.48 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.72 -8.35 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.495 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds