Wall clock time and date at job start Tue Mar 31 2020 12:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47058 * 2 1 4 4 C 1.46903 * 110.99908 * 209.21617 * 3 2 1 5 5 C 1.50693 * 109.47224 * 71.90877 * 4 3 2 6 6 H 1.08008 * 120.00001 * 5.32191 * 5 4 3 7 7 C 1.37882 * 120.00336 * 185.32577 * 5 4 3 8 8 N 1.31508 * 120.00302 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99507 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46834 * 90.00613 * 9 7 5 11 11 H 1.48501 * 109.46863 * 210.00178 * 9 7 5 12 12 H 1.48496 * 109.47068 * 330.00203 * 9 7 5 13 13 C 1.46901 * 110.99954 * 85.26119 * 3 2 1 14 14 H 1.09001 * 109.47127 * 185.02720 * 13 3 2 15 15 C 1.50699 * 109.47223 * 65.03204 * 13 3 2 16 16 O 1.21285 * 119.99704 * 348.37289 * 15 13 3 17 17 N 1.34771 * 120.00612 * 168.37207 * 15 13 3 18 18 C 1.46500 * 120.00658 * 179.97438 * 17 15 13 19 19 C 1.52992 * 117.49924 * 223.62327 * 18 17 15 20 20 C 1.53000 * 60.00362 * 252.51073 * 19 18 17 21 21 C 1.50694 * 109.47030 * 305.03212 * 13 3 2 22 22 C 1.38246 * 119.97615 * 289.31386 * 21 13 3 23 23 C 1.38193 * 120.02931 * 180.02562 * 22 21 13 24 24 C 1.38466 * 119.97375 * 0.02562 * 23 22 21 25 25 F 1.35096 * 120.02619 * 179.97438 * 24 23 22 26 26 C 1.38457 * 119.94396 * 0.24540 * 24 23 22 27 27 C 1.38195 * 119.97699 * 359.47946 * 26 24 23 28 28 H 1.08997 * 109.47267 * 291.31699 * 1 2 3 29 29 H 1.08996 * 109.46606 * 51.31587 * 1 2 3 30 30 H 1.09005 * 109.47123 * 171.31554 * 1 2 3 31 31 H 1.09000 * 109.47402 * 239.99568 * 2 1 3 32 32 H 1.09007 * 109.46960 * 119.99676 * 2 1 3 33 33 H 1.08996 * 109.46997 * 191.91505 * 4 3 2 34 34 H 1.09004 * 109.47149 * 311.91075 * 4 3 2 35 35 H 0.96996 * 120.00316 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99260 * 0.02562 * 17 15 13 37 37 H 1.08996 * 115.54733 * 9.33754 * 18 17 15 38 38 H 1.09000 * 117.50067 * 0.02562 * 19 18 17 39 39 H 1.09005 * 117.49515 * 145.02338 * 19 18 17 40 40 H 1.09000 * 117.50350 * 252.51422 * 20 19 18 41 41 H 1.09000 * 117.49710 * 107.48275 * 20 19 18 42 42 H 1.07999 * 119.98278 * 0.02562 * 22 21 13 43 43 H 1.08002 * 120.01693 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.01167 * 179.75024 * 26 24 23 45 45 H 1.08002 * 119.98753 * 180.29862 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3237 1.4824 -0.6694 5 6 3.1409 1.3010 -2.1542 6 1 2.1475 1.2166 -2.5697 7 6 4.2418 1.2429 -2.9824 8 7 4.0822 1.0852 -4.2782 9 14 5.9598 1.3896 -2.2638 10 1 6.4651 0.0390 -1.9095 11 1 6.8640 2.0093 -3.2656 12 1 5.9159 2.2372 -1.0453 13 6 2.0883 1.9191 1.3668 14 1 2.3678 2.9721 1.3318 15 6 3.1186 1.1519 2.1547 16 8 3.5819 0.1240 1.7079 17 7 3.5254 1.6080 3.3559 18 6 4.5266 0.8619 4.1222 19 6 4.2818 0.6871 5.6223 20 6 5.3705 1.6435 5.1312 21 6 0.7422 1.7784 2.0292 22 6 -0.3153 2.5689 1.6195 23 6 -1.5502 2.4412 2.2266 24 6 -1.7279 1.5212 3.2461 25 9 -2.9345 1.3958 3.8407 26 6 -0.6666 0.7339 3.6594 27 6 0.5658 0.8595 3.0469 28 1 -0.3633 0.3736 0.9573 29 1 -0.3632 0.6423 -0.8022 30 1 -0.3633 -1.0159 -0.1552 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.7602 2.4618 -0.4739 34 1 3.9870 0.7062 -0.2876 35 1 4.8567 1.0439 -4.8608 36 1 3.1546 2.4300 3.7134 37 1 5.0088 0.0411 3.5915 38 1 3.3757 1.1268 6.0390 39 1 4.6031 -0.2492 6.0788 40 1 6.4078 1.3365 5.2646 41 1 5.1806 2.7127 5.2248 42 1 -0.1763 3.2867 0.8246 43 1 -2.3763 3.0586 1.9061 44 1 -0.8030 0.0188 4.4572 45 1 1.3926 0.2421 3.3659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:45 Heat of formation + Delta-G solvation = -4.952136 kcal Electronic energy + Delta-G solvation = -28100.139391 eV Core-core repulsion = 24226.807236 eV Total energy + Delta-G solvation = -3873.332155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.94862 -40.84069 -38.86710 -37.49771 -35.85032 -33.19815 -32.55529 -31.19456 -31.07729 -30.29889 -27.69216 -25.23761 -23.40142 -22.61713 -22.60453 -22.11339 -21.42152 -20.67342 -19.76555 -17.82169 -17.34169 -16.76620 -16.58387 -16.26468 -15.73241 -15.56629 -15.09703 -14.84821 -14.46954 -14.34030 -14.25684 -13.82749 -13.50052 -13.19433 -13.15293 -12.93891 -12.69627 -12.35246 -12.16986 -12.04347 -11.88442 -11.77217 -11.43562 -11.07159 -11.06324 -10.93444 -10.70393 -10.49817 -10.33000 -10.09327 -9.96510 -9.76590 -9.28284 -9.15226 -8.77878 -8.53626 -8.47309 -7.37873 -6.01141 -3.97249 1.05246 1.18933 2.63144 3.06408 3.32992 3.39405 3.42829 3.50023 3.73209 4.19523 4.46554 4.49945 4.58903 4.65393 4.75624 4.78416 4.80070 4.80899 5.00376 5.21542 5.31871 5.35869 5.37864 5.51309 5.58705 5.76624 5.82504 5.83075 5.88992 5.90163 6.06309 6.13628 6.15809 6.23264 6.40856 6.47093 6.52660 6.74248 6.80863 6.88627 6.99879 7.16294 7.42698 7.63673 7.83959 7.96757 8.31266 8.67854 9.09184 9.61303 11.12018 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.005290 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.286513 B = 5291.369897 C = 7429.046949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.047 3.953 3 N -0.488 5.488 4 C 0.152 3.848 5 C -0.503 4.503 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.901 5.901 9 Si 0.875 3.125 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.270 1.270 13 C 0.102 3.898 14 H 0.111 0.889 15 C 0.491 3.509 16 O -0.515 6.515 17 N -0.708 5.708 18 C 0.081 3.919 19 C -0.195 4.195 20 C -0.191 4.191 21 C -0.067 4.067 22 C -0.058 4.058 23 C -0.153 4.153 24 C 0.093 3.907 25 F -0.144 7.144 26 C -0.153 4.153 27 C -0.088 4.088 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.018 0.982 34 H 0.016 0.984 35 H 0.263 0.737 36 H 0.400 0.600 37 H 0.136 0.864 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.896 2.990 21.000 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.081 4.081 3 N -0.210 5.210 4 C 0.026 3.974 5 C -0.541 4.541 6 H 0.099 0.901 7 C -0.131 4.131 8 N -0.540 5.540 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.195 1.195 13 C -0.011 4.011 14 H 0.129 0.871 15 C 0.276 3.724 16 O -0.389 6.389 17 N -0.360 5.360 18 C -0.025 4.025 19 C -0.233 4.233 20 C -0.230 4.230 21 C -0.068 4.068 22 C -0.076 4.076 23 C -0.172 4.172 24 C 0.073 3.927 25 F -0.123 7.123 26 C -0.171 4.171 27 C -0.107 4.107 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.234 0.766 37 H 0.154 0.846 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.839 2.491 20.160 21.136 hybrid contribution 1.279 -0.053 1.051 1.656 sum -4.560 2.438 21.211 21.832 Atomic orbital electron populations 1.22153 0.96680 1.00409 1.01952 1.22154 0.94127 0.89127 1.02658 1.62636 1.29677 1.21023 1.07631 1.20399 0.85355 0.96064 0.95558 1.20963 0.95330 1.49117 0.88731 0.90080 1.24847 0.98644 0.94943 0.94707 1.69885 1.30317 1.50729 1.03073 0.86875 0.85243 0.78738 0.78919 1.20287 1.21341 1.19528 1.21002 0.89107 1.00502 0.90465 0.87116 1.22302 0.83244 0.86207 0.80604 1.90714 1.56218 1.24039 1.67949 1.45761 1.42761 1.27602 1.19826 1.21591 0.94127 0.98882 0.87948 1.23400 1.00595 1.01718 0.97635 1.23346 0.97240 0.98333 1.04062 1.19478 0.95020 0.96580 0.95702 1.20885 0.90667 0.98299 0.97753 1.21132 0.99087 0.99869 0.97123 1.17721 0.80791 0.98863 0.95295 1.91481 1.42859 1.95224 1.82718 1.21003 0.92443 1.01173 1.02525 1.20976 0.96896 0.97267 0.95547 0.92778 0.92237 0.93889 0.89813 0.93177 0.96363 0.96661 0.92738 0.76613 0.84628 0.88577 0.88225 0.88076 0.88533 0.83995 0.84672 0.85056 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.27 37.16 0.34 -2.28 16 2 C 0.05 0.94 4.72 -3.82 -0.02 0.92 16 3 N -0.49 -9.77 4.42 -230.87 -1.02 -10.79 16 4 C 0.15 3.69 3.06 -4.98 -0.02 3.68 16 5 C -0.50 -14.32 8.86 -34.44 -0.31 -14.62 16 6 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 9 Si 0.87 22.22 27.37 -169.99 -4.65 17.56 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.64 6.70 56.52 0.38 -6.26 16 13 C 0.10 1.59 2.44 -70.02 -0.17 1.42 16 14 H 0.11 1.56 8.11 -51.93 -0.42 1.14 16 15 C 0.49 7.77 4.38 -10.99 -0.05 7.72 16 16 O -0.52 -10.27 11.60 5.55 0.06 -10.21 16 17 N -0.71 -8.35 5.15 -53.81 -0.28 -8.63 16 18 C 0.08 0.90 6.43 -67.93 -0.44 0.46 16 19 C -0.19 -1.62 10.46 -26.73 -0.28 -1.90 16 20 C -0.19 -1.63 10.46 -26.73 -0.28 -1.91 16 21 C -0.07 -0.86 2.93 -104.62 -0.31 -1.17 16 22 C -0.06 -0.68 8.31 -39.59 -0.33 -1.01 16 23 C -0.15 -1.68 9.82 -39.51 -0.39 -2.07 16 24 C 0.09 1.07 7.30 -39.42 -0.29 0.78 16 25 F -0.14 -1.73 17.27 2.25 0.04 -1.70 16 26 C -0.15 -1.70 9.88 -39.52 -0.39 -2.09 16 27 C -0.09 -1.06 7.90 -39.59 -0.31 -1.38 16 28 H 0.05 0.82 3.49 -51.93 -0.18 0.64 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.95 7.05 -51.93 -0.37 1.58 16 32 H 0.05 1.00 5.39 -51.93 -0.28 0.72 16 33 H 0.02 0.45 7.40 -51.93 -0.38 0.06 16 34 H 0.02 0.40 5.28 -51.93 -0.27 0.13 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.40 3.65 8.83 -40.82 -0.36 3.29 16 37 H 0.14 1.80 7.40 -51.93 -0.38 1.41 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.13 1.62 6.35 -52.49 -0.33 1.28 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -32.55 361.03 -9.32 -41.87 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.37 Total: 4.99 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -3.32 Total: -11.50 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.52 Total: -46.46 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.06 Total: -10.21 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.65 Total: 17.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.55 -9.32 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.918 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds