Wall clock time and date at job start Tue Mar 31 2020 12:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.47176 * 2 1 4 4 C 1.46900 * 110.99917 * 58.29515 * 3 2 1 5 5 C 1.50706 * 109.46742 * 70.95463 * 4 3 2 6 6 H 1.08000 * 119.99724 * 5.07430 * 5 4 3 7 7 C 1.37878 * 119.99569 * 185.07298 * 5 4 3 8 8 N 1.31516 * 119.99443 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00331 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46964 * 90.00112 * 9 7 5 11 11 H 1.48500 * 109.46855 * 209.99961 * 9 7 5 12 12 H 1.48497 * 109.47005 * 330.00152 * 9 7 5 13 13 C 1.46902 * 111.00087 * 294.34348 * 3 2 1 14 14 N 1.46496 * 109.47136 * 274.46745 * 13 3 2 15 15 C 1.46761 * 124.34880 * 90.00084 * 14 13 3 16 16 C 1.54482 * 105.47416 * 197.01537 * 15 14 13 17 17 H 1.09005 * 110.97088 * 92.70368 * 16 15 14 18 18 C 1.50701 * 110.97133 * 216.42705 * 16 15 14 19 19 C 1.38216 * 120.01070 * 60.00222 * 18 16 15 20 20 C 1.38227 * 120.02618 * 179.97438 * 19 18 16 21 21 C 1.38268 * 120.05026 * 0.02562 * 20 19 18 22 22 C 1.38183 * 120.02392 * 359.97438 * 21 20 19 23 23 C 1.38438 * 120.01251 * 239.72084 * 18 16 15 24 24 F 1.35099 * 120.02630 * 0.02562 * 23 18 16 25 25 C 1.54631 * 101.76507 * 334.58547 * 16 15 14 26 26 C 1.34417 * 124.34941 * 269.69740 * 14 13 3 27 27 O 1.21280 * 124.94482 * 359.57809 * 26 14 13 28 28 H 1.09003 * 109.47346 * 294.61406 * 1 2 3 29 29 H 1.09001 * 109.47379 * 54.60756 * 1 2 3 30 30 H 1.08994 * 109.47541 * 174.61127 * 1 2 3 31 31 H 1.09005 * 109.46820 * 240.00213 * 2 1 3 32 32 H 1.08990 * 109.47249 * 120.00212 * 2 1 3 33 33 H 1.08995 * 109.46937 * 190.95105 * 4 3 2 34 34 H 1.08995 * 109.47438 * 310.95807 * 4 3 2 35 35 H 0.97000 * 119.99566 * 180.02562 * 8 7 5 36 36 H 1.09010 * 109.47179 * 34.46816 * 13 3 2 37 37 H 1.09000 * 109.46966 * 154.46722 * 13 3 2 38 38 H 1.08995 * 110.25043 * 316.01555 * 15 14 13 39 39 H 1.09007 * 110.24772 * 77.92864 * 15 14 13 40 40 H 1.07996 * 119.98928 * 359.95009 * 19 18 16 41 41 H 1.08001 * 119.97365 * 179.97438 * 20 19 18 42 42 H 1.07991 * 119.98693 * 179.97438 * 21 20 19 43 43 H 1.07998 * 120.01062 * 179.97438 * 22 21 20 44 44 H 1.08998 * 110.48397 * 143.47383 * 25 16 15 45 45 H 1.09004 * 110.48430 * 265.98882 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5156 2.1216 1.1668 5 6 2.1940 1.6135 2.4129 6 1 2.9842 0.8813 2.3372 7 6 1.8058 2.0836 3.6496 8 7 2.3981 1.6406 4.7370 9 14 0.4385 3.3497 3.7805 10 1 -0.8680 2.6556 3.9101 11 1 0.6665 4.2027 4.9744 12 1 0.4301 4.1970 2.5610 13 6 1.6622 2.0698 -1.2495 14 7 2.6777 1.7899 -2.2676 15 6 2.6265 0.6565 -3.1986 16 6 4.0606 0.5152 -3.7552 17 1 4.6410 -0.1923 -3.1629 18 6 4.0384 0.1088 -5.2062 19 6 3.4198 0.9172 -6.1412 20 6 3.3997 0.5450 -7.4722 21 6 3.9977 -0.6365 -7.8699 22 6 4.6167 -1.4463 -6.9369 23 6 4.6426 -1.0716 -5.6041 24 9 5.2519 -1.8600 -4.6918 25 6 4.6058 1.9528 -3.5906 26 6 3.7732 2.5413 -2.4729 27 8 4.0546 3.5436 -1.8508 28 1 -0.3634 0.4280 0.9343 29 1 -0.3634 0.5952 -0.8377 30 1 -0.3634 -1.0230 -0.0965 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.7275 3.1838 1.0451 34 1 0.4393 1.9733 1.2529 35 1 2.1247 1.9710 5.6070 36 1 0.6925 1.7118 -1.5955 37 1 1.6110 3.1443 -1.0732 38 1 2.3353 -0.2519 -2.6714 39 1 1.9254 0.8639 -4.0071 40 1 2.9516 1.8399 -5.8316 41 1 2.9157 1.1772 -8.2020 42 1 3.9811 -0.9265 -8.9100 43 1 5.0834 -2.3693 -7.2477 44 1 5.6600 1.9317 -3.3144 45 1 4.4644 2.5220 -4.5094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783977607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:04 Heat of formation + Delta-G solvation = -34.251811 kcal Electronic energy + Delta-G solvation = -27154.632700 eV Core-core repulsion = 23280.030016 eV Total energy + Delta-G solvation = -3874.602685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.16477 -40.62738 -39.12368 -37.29299 -36.19940 -33.30489 -32.39015 -30.91277 -30.29095 -29.55973 -27.57495 -27.26800 -24.85398 -23.71925 -22.83188 -22.74590 -20.80464 -19.92308 -18.95328 -18.09502 -17.04731 -16.82908 -16.36478 -16.16699 -15.85319 -15.77918 -15.46066 -14.73355 -14.60993 -14.42054 -14.14780 -13.76397 -13.65053 -13.46014 -13.21997 -13.14494 -12.84538 -12.72102 -12.41734 -12.23495 -12.14971 -11.76347 -11.62442 -11.39615 -11.35456 -11.13386 -11.04351 -10.69457 -10.50751 -10.15677 -9.89193 -9.64253 -9.33386 -9.27191 -8.96657 -8.60401 -8.51003 -7.42006 -6.02344 -3.98969 0.75632 0.81329 2.82134 3.16710 3.26342 3.28748 3.37548 3.39665 3.90451 4.07428 4.29734 4.43860 4.45570 4.48772 4.62029 4.77713 4.84478 4.90872 4.96249 5.07681 5.28237 5.30088 5.36799 5.39414 5.50998 5.64309 5.65800 5.69339 5.72256 5.75717 5.79536 5.83354 5.93323 5.99415 6.06008 6.23960 6.43086 6.50481 6.68893 6.73495 6.90452 6.97807 7.36083 7.62901 7.86590 7.99960 8.46444 8.68346 9.07715 9.59256 11.11106 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.002964 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.229783 B = 9445.672668 C = 9666.830985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.061 3.939 3 N -0.537 5.537 4 C 0.165 3.835 5 C -0.504 4.504 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.281 3.719 14 N -0.605 5.605 15 C 0.113 3.887 16 C -0.064 4.064 17 H 0.105 0.895 18 C -0.103 4.103 19 C -0.087 4.087 20 C -0.128 4.128 21 C -0.094 4.094 22 C -0.153 4.153 23 C 0.107 3.893 24 F -0.135 7.135 25 C -0.145 4.145 26 C 0.522 3.478 27 O -0.522 6.522 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.027 0.973 34 H -0.004 1.004 35 H 0.263 0.737 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.103 0.897 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 -5.639 -27.926 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.067 4.067 3 N -0.262 5.262 4 C 0.039 3.961 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.700 3.300 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.070 3.930 14 N -0.341 5.341 15 C -0.011 4.011 16 C -0.083 4.083 17 H 0.124 0.876 18 C -0.104 4.104 19 C -0.105 4.105 20 C -0.146 4.146 21 C -0.112 4.112 22 C -0.172 4.172 23 C 0.087 3.913 24 F -0.113 7.113 25 C -0.185 4.185 26 C 0.309 3.691 27 O -0.397 6.397 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.045 0.955 34 H 0.013 0.987 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.122 0.878 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.320 -5.085 -27.235 27.708 hybrid contribution -1.454 0.328 0.333 1.528 sum -1.134 -4.757 -26.902 27.343 Atomic orbital electron populations 1.22428 0.99283 1.01171 1.02043 1.22062 0.91959 0.90801 1.01902 1.61795 1.60241 1.02272 1.01843 1.20224 0.93506 0.93848 0.88554 1.20977 1.19898 1.25225 0.88107 0.90232 1.24887 0.96473 0.96233 0.95730 1.69893 1.42196 1.43979 0.97888 0.86894 0.82709 0.82327 0.78032 1.20368 1.21121 1.19197 1.21890 0.87287 0.99243 0.84584 1.48458 1.24488 1.27287 1.33853 1.22151 0.95550 0.90756 0.92647 1.21023 0.97471 0.97809 0.91989 0.87649 1.19668 1.00491 0.94437 0.95810 1.20964 0.97787 0.99282 0.92425 1.21212 1.00234 0.97131 0.95989 1.21034 0.96608 0.94093 0.99481 1.21167 1.02798 1.01821 0.91396 1.17562 0.96882 0.90030 0.86780 1.91518 1.80689 1.72982 1.66110 1.22485 1.01687 0.94858 0.99519 1.20660 0.81326 0.83478 0.83676 1.90749 1.72107 1.25339 1.51474 0.91323 0.93688 0.92883 0.92860 0.89508 0.95486 0.98658 0.92701 0.92569 0.89384 0.90018 0.91136 0.84832 0.85240 0.85076 0.84693 0.87817 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.04 9.22 37.16 0.34 -2.70 16 2 C 0.06 1.10 5.88 -3.82 -0.02 1.08 16 3 N -0.54 -11.19 4.76 -239.98 -1.14 -12.33 16 4 C 0.16 4.01 3.56 -4.97 -0.02 3.99 16 5 C -0.50 -14.51 9.08 -34.44 -0.31 -14.82 16 6 H 0.08 2.53 7.85 -52.49 -0.41 2.11 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 9 Si 0.87 21.76 27.37 -169.99 -4.65 17.11 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.46 6.69 56.52 0.38 -6.08 16 13 C 0.28 4.84 5.66 -63.32 -0.36 4.48 16 14 N -0.61 -9.12 3.17 -175.90 -0.56 -9.68 16 15 C 0.11 1.24 6.74 -3.12 -0.02 1.22 16 16 C -0.06 -0.66 3.34 -90.14 -0.30 -0.96 16 17 H 0.11 1.18 7.24 -51.93 -0.38 0.80 16 18 C -0.10 -0.90 4.97 -104.56 -0.52 -1.42 16 19 C -0.09 -0.62 8.06 -39.59 -0.32 -0.94 16 20 C -0.13 -0.75 10.04 -39.57 -0.40 -1.15 16 21 C -0.09 -0.55 10.04 -39.59 -0.40 -0.94 16 22 C -0.15 -1.10 10.03 -39.51 -0.40 -1.50 16 23 C 0.11 0.98 7.25 -39.42 -0.29 0.69 16 24 F -0.13 -1.45 16.25 2.25 0.04 -1.41 16 25 C -0.15 -1.65 6.30 -26.74 -0.17 -1.82 16 26 C 0.52 8.59 8.02 -10.86 -0.09 8.51 16 27 O -0.52 -11.18 17.59 5.56 0.10 -11.08 16 28 H 0.07 1.26 6.45 -51.93 -0.33 0.93 16 29 H 0.04 0.64 6.06 -51.93 -0.31 0.32 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.83 6.00 -51.93 -0.31 0.52 16 32 H 0.09 1.81 7.36 -51.93 -0.38 1.43 16 33 H 0.03 0.70 7.06 -51.93 -0.37 0.33 16 34 H 0.00 -0.10 4.99 -51.93 -0.26 -0.36 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.06 0.83 5.74 -51.92 -0.30 0.53 16 37 H 0.09 1.66 7.26 -51.93 -0.38 1.28 16 38 H 0.08 0.91 6.14 -51.93 -0.32 0.59 16 39 H 0.07 0.63 7.15 -51.92 -0.37 0.26 16 40 H 0.13 0.82 7.33 -52.49 -0.38 0.44 16 41 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.10 0.94 6.66 -51.93 -0.35 0.60 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -34.54 359.73 -9.51 -44.05 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.13 Total: -0.49 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -3.36 Total: -4.37 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.93 Total: -49.23 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.10 Total: -11.08 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.65 Total: 17.11 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.54 -9.51 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783977607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.799 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds