Wall clock time and date at job start Tue Mar 31 2020 12:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36941 * 120.00182 * 2 1 4 4 H 1.07999 * 119.99580 * 212.48791 * 3 2 1 5 5 C 1.38809 * 120.00085 * 32.48989 * 3 2 1 6 6 N 1.31625 * 119.99805 * 6.23061 * 5 3 2 7 7 Si 1.86800 * 119.99973 * 186.22568 * 5 3 2 8 8 H 1.48494 * 109.46841 * 60.00322 * 7 5 3 9 9 H 1.48504 * 109.46882 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47113 * 300.00418 * 7 5 3 11 11 C 1.46505 * 119.99786 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.52061 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49340 * 60.00231 * 11 2 1 14 14 C 1.53044 * 109.53651 * 178.68117 * 13 11 2 15 15 C 1.53186 * 109.31198 * 61.36306 * 14 13 11 16 16 N 1.46930 * 108.77700 * 305.36822 * 15 14 13 17 17 C 1.34779 * 120.62679 * 233.60404 * 16 15 14 18 18 O 1.21279 * 119.99999 * 354.97061 * 17 16 15 19 19 C 1.50701 * 119.99950 * 174.96175 * 17 16 15 20 20 H 1.09004 * 109.46557 * 15.98931 * 19 17 16 21 21 F 1.39899 * 109.47121 * 255.99454 * 19 17 16 22 22 C 1.50695 * 109.46943 * 135.99341 * 19 17 16 23 23 C 1.38234 * 120.00064 * 64.73314 * 22 19 17 24 24 C 1.38241 * 119.99668 * 179.76484 * 23 22 19 25 25 C 1.38236 * 120.00086 * 0.50595 * 24 23 22 26 26 C 1.38237 * 120.00036 * 359.74207 * 25 24 23 27 27 C 1.38237 * 119.99624 * 244.99761 * 22 19 17 28 28 C 1.46917 * 118.73976 * 53.60470 * 16 15 14 29 29 H 1.09002 * 109.47146 * 265.14705 * 1 2 3 30 30 H 1.09007 * 109.47110 * 25.13903 * 1 2 3 31 31 H 1.09003 * 109.47814 * 145.14383 * 1 2 3 32 32 H 0.96995 * 119.99392 * 179.97438 * 6 5 3 33 33 H 1.08995 * 109.45941 * 298.70349 * 13 11 2 34 34 H 1.09003 * 109.45901 * 58.66378 * 13 11 2 35 35 H 1.09001 * 109.49976 * 181.31904 * 14 13 11 36 36 H 1.09005 * 109.49517 * 301.41236 * 14 13 11 37 37 H 1.09004 * 109.58591 * 65.15421 * 15 14 13 38 38 H 1.08996 * 109.58837 * 185.57758 * 15 14 13 39 39 H 1.07997 * 120.00186 * 359.97438 * 23 22 19 40 40 H 1.07995 * 119.99607 * 180.22738 * 24 23 22 41 41 H 1.08001 * 120.00073 * 179.72823 * 25 24 23 42 42 H 1.08000 * 120.00122 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.00282 * 0.02562 * 27 22 19 44 44 H 1.09004 * 109.58557 * 186.60297 * 28 16 15 45 45 H 1.09002 * 109.58819 * 66.18264 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1029 1.2590 -0.5024 5 6 1.6186 2.2940 0.6457 6 7 0.5198 2.1752 1.3606 7 14 2.4635 3.9537 0.5003 8 1 2.5136 4.3601 -0.9271 9 1 1.7035 4.9657 1.2773 10 1 3.8451 3.8544 1.0355 11 6 2.1974 -1.2688 0.0006 12 1 3.2692 -1.0706 0.0009 13 6 1.8281 -2.0723 -1.2485 14 6 2.6174 -3.3833 -1.2656 15 6 2.2495 -4.2123 -0.0311 16 7 2.4652 -3.3937 1.1698 17 6 3.2359 -3.8450 2.1791 18 8 3.6845 -4.9712 2.1427 19 6 3.5405 -2.9502 3.3528 20 1 2.8461 -2.1099 3.3588 21 9 4.8508 -2.4717 3.2467 22 6 3.3934 -3.7326 4.6323 23 6 4.2420 -4.7913 4.8965 24 6 4.1102 -5.5059 6.0725 25 6 3.1231 -5.1684 6.9795 26 6 2.2712 -4.1129 6.7129 27 6 2.4064 -3.3949 5.5393 28 6 1.8247 -2.0739 1.2494 29 1 -0.3633 -0.0869 1.0240 30 1 -0.3634 0.9304 -0.4366 31 1 -0.3635 -0.8433 -0.5873 32 1 0.1490 2.9494 1.8120 33 1 0.7604 -2.2913 -1.2368 34 1 2.0697 -1.4913 -2.1386 35 1 2.3714 -3.9444 -2.1672 36 1 3.6853 -3.1652 -1.2524 37 1 1.2019 -4.5080 -0.0885 38 1 2.8799 -5.1003 0.0139 39 1 5.0102 -5.0581 4.1858 40 1 4.7756 -6.3307 6.2806 41 1 3.0173 -5.7294 7.8963 42 1 1.4997 -3.8494 7.4213 43 1 1.7404 -2.5707 5.3308 44 1 2.1749 -1.5509 2.1393 45 1 0.7425 -2.1950 1.2965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027597321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:10 Heat of formation + Delta-G solvation = -27.273761 kcal Electronic energy + Delta-G solvation = -27804.493789 eV Core-core repulsion = 23930.193696 eV Total energy + Delta-G solvation = -3874.300094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.79180 -40.08935 -39.01334 -37.48363 -34.98871 -32.94641 -32.17301 -31.41782 -30.94950 -28.90660 -27.43526 -26.05977 -24.92680 -23.60999 -22.69232 -22.26875 -21.16427 -19.84265 -18.72285 -17.68865 -17.22986 -16.80551 -16.31909 -15.94151 -15.53490 -15.04764 -14.69257 -14.44879 -14.30413 -14.19656 -14.05960 -13.65659 -13.57664 -13.44121 -12.78820 -12.69877 -12.59279 -12.55246 -12.43356 -12.02797 -11.81586 -11.28396 -11.16074 -11.12674 -10.86293 -10.84482 -10.60734 -10.48619 -10.45367 -10.35310 -9.99083 -9.83727 -9.56432 -8.95554 -8.90881 -8.63024 -8.44825 -6.72898 -5.85550 -3.39264 1.15115 1.36267 2.51768 2.97853 3.34284 3.39325 3.40629 3.70501 4.26330 4.34494 4.44919 4.60616 4.91342 4.95222 5.06250 5.10687 5.18124 5.23278 5.28601 5.36447 5.43536 5.50184 5.57113 5.61864 5.62606 5.81412 5.84706 5.99198 5.99950 6.05883 6.13011 6.28820 6.32502 6.34754 6.42968 6.49125 6.61810 6.69966 6.78437 6.87901 6.89316 7.24405 7.45403 7.57026 7.73810 8.12103 8.37084 9.14747 9.73691 10.27650 11.20196 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.004126 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.546204 B = 6784.558200 C = 8015.810118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.588 5.588 3 C -0.265 4.265 4 H 0.065 0.935 5 C 0.014 3.986 6 N -0.903 5.903 7 Si 0.904 3.096 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.167 3.833 12 H 0.068 0.932 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.113 3.887 16 N -0.595 5.595 17 C 0.501 3.499 18 O -0.532 6.532 19 C 0.118 3.882 20 H 0.118 0.882 21 F -0.182 7.182 22 C -0.122 4.122 23 C -0.069 4.069 24 C -0.129 4.129 25 C -0.110 4.110 26 C -0.128 4.128 27 C -0.094 4.094 28 C 0.083 3.917 29 H 0.020 0.980 30 H 0.051 0.949 31 H -0.002 1.002 32 H 0.255 0.745 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.085 0.915 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -13.363 5.274 14.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.310 5.310 3 C -0.394 4.394 4 H 0.082 0.918 5 C -0.186 4.186 6 N -0.546 5.546 7 Si 0.733 3.267 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.207 1.207 11 C 0.057 3.943 12 H 0.086 0.914 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.009 4.009 16 N -0.328 5.328 17 C 0.286 3.714 18 O -0.409 6.409 19 C 0.079 3.921 20 H 0.135 0.865 21 F -0.162 7.162 22 C -0.123 4.123 23 C -0.087 4.087 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.146 4.146 27 C -0.112 4.112 28 C -0.040 4.040 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.016 0.984 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.103 0.897 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.061 -13.769 5.328 14.907 hybrid contribution 0.325 1.143 0.016 1.188 sum 2.386 -12.626 5.344 13.916 Atomic orbital electron populations 1.20773 0.82932 0.97326 0.97569 1.43821 1.01588 0.99903 1.85684 1.19117 1.04574 0.87430 1.28303 0.91779 1.25251 0.97741 0.99160 0.96439 1.69988 1.21574 1.29510 1.33485 0.86360 0.79118 0.83505 0.77690 1.20875 1.21537 1.20681 1.20697 0.96817 0.86271 0.90477 0.91359 1.22068 0.99714 0.95047 1.00448 1.21910 1.01086 0.97126 0.96820 1.21626 1.01370 0.94246 0.83678 1.48325 1.47948 1.19247 1.17296 1.20650 0.79177 0.87808 0.83799 1.90653 1.52245 1.19295 1.78688 1.20485 0.82362 0.97139 0.92150 0.86454 1.92907 1.37345 1.89028 1.96956 1.19805 0.98864 0.98275 0.95359 1.21106 0.98096 0.93135 0.96341 1.21152 0.98966 1.00253 0.94317 1.21227 0.95247 0.97096 0.99217 1.21094 0.99920 0.96316 0.97232 1.21086 0.97050 0.99504 0.93600 1.22896 0.97805 0.80810 1.02538 0.96213 0.92981 0.98398 0.93476 0.92179 0.91583 0.91109 0.91699 0.91520 0.89427 0.85126 0.85843 0.86003 0.85662 0.85324 0.89668 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.57 7.98 59.84 0.48 4.05 16 2 N -0.59 -13.60 2.78 -173.35 -0.48 -14.08 16 3 C -0.26 -6.87 9.47 -15.06 -0.14 -7.02 16 4 H 0.06 1.66 7.84 -52.49 -0.41 1.25 16 5 C 0.01 0.37 5.15 -17.43 -0.09 0.28 16 6 N -0.90 -24.76 11.03 55.49 0.61 -24.15 16 7 Si 0.90 20.99 29.56 -169.99 -5.02 15.96 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.17 3.17 2.75 -67.81 -0.19 2.98 16 12 H 0.07 1.39 7.89 -51.93 -0.41 0.98 16 13 C -0.13 -2.13 5.10 -26.69 -0.14 -2.27 16 14 C -0.13 -1.75 6.08 -26.61 -0.16 -1.91 16 15 C 0.11 1.56 6.42 -3.71 -0.02 1.54 16 16 N -0.60 -9.40 2.97 -172.78 -0.51 -9.91 16 17 C 0.50 8.37 7.03 -10.98 -0.08 8.29 16 18 O -0.53 -9.78 14.58 5.56 0.08 -9.70 16 19 C 0.12 1.85 3.64 -29.04 -0.11 1.74 16 20 H 0.12 1.76 5.07 -51.93 -0.26 1.49 16 21 F -0.18 -3.15 16.92 2.25 0.04 -3.11 16 22 C -0.12 -1.77 5.00 -104.63 -0.52 -2.30 16 23 C -0.07 -0.97 8.55 -39.58 -0.34 -1.30 16 24 C -0.13 -1.50 10.05 -39.58 -0.40 -1.89 16 25 C -0.11 -1.16 10.05 -39.58 -0.40 -1.55 16 26 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 27 C -0.09 -1.20 9.67 -39.58 -0.38 -1.58 16 28 C 0.08 1.42 5.68 -3.72 -0.02 1.40 16 29 H 0.02 0.47 7.75 -51.93 -0.40 0.07 16 30 H 0.05 1.29 7.16 -51.92 -0.37 0.92 16 31 H 0.00 -0.05 6.48 -51.93 -0.34 -0.38 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.06 0.95 6.75 -51.93 -0.35 0.60 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.23 7.04 -51.93 -0.37 0.87 16 39 H 0.13 1.92 7.39 -52.49 -0.39 1.53 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.13 1.46 7.95 -52.49 -0.42 1.04 16 44 H 0.09 1.51 5.14 -51.93 -0.27 1.24 16 45 H 0.07 1.21 7.51 -51.93 -0.39 0.82 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -29.46 360.88 -9.22 -38.69 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.47 Total: 2.20 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -2.90 Total: -1.34 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.38 Total: -48.14 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.46 -9.22 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027597321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.411 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds