Wall clock time and date at job start Tue Mar 31 2020 12:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99689 * 2 1 4 4 H 1.48503 * 109.46832 * 271.24350 * 3 2 1 5 5 H 1.48493 * 109.47278 * 31.24309 * 3 2 1 6 6 H 1.48494 * 109.46854 * 151.24605 * 3 2 1 7 7 C 1.37874 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99860 * 358.78611 * 7 2 1 9 9 C 1.50700 * 120.00273 * 178.79290 * 7 2 1 10 10 C 1.53002 * 115.55127 * 87.32287 * 9 7 2 11 11 N 1.46507 * 109.46988 * 32.58336 * 10 9 7 12 12 C 1.34775 * 120.00043 * 185.60784 * 11 10 9 13 13 O 1.21587 * 120.00240 * 4.91537 * 12 11 10 14 14 N 1.34777 * 120.00152 * 184.91042 * 12 11 10 15 15 C 1.46492 * 120.00241 * 175.08078 * 14 12 11 16 16 H 1.08999 * 113.50210 * 20.91682 * 15 14 12 17 17 C 1.51018 * 114.51566 * 246.79385 * 15 14 12 18 18 H 1.09002 * 115.09429 * 321.86224 * 17 15 14 19 19 C 1.52838 * 125.61364 * 115.35016 * 17 15 14 20 20 C 1.56112 * 100.07222 * 126.72417 * 19 17 15 21 21 O 1.45485 * 105.75653 * 336.81686 * 20 19 17 22 22 C 1.38651 * 107.81648 * 348.90353 * 21 20 19 23 23 H 1.09002 * 106.99334 * 285.02667 * 22 21 20 24 24 C 1.47416 * 140.07683 * 130.24451 * 22 21 20 25 25 C 1.52749 * 125.43990 * 100.16972 * 24 22 21 26 26 C 1.53990 * 86.70714 * 201.52338 * 25 24 22 27 27 C 1.52888 * 125.49826 * 342.63182 * 24 22 21 28 28 C 1.52994 * 117.52082 * 233.02847 * 9 7 2 29 29 C 1.52995 * 117.49917 * 301.65933 * 9 7 2 30 30 H 0.96995 * 119.99948 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47470 * 272.58799 * 10 9 7 32 32 H 1.08996 * 109.47180 * 152.58317 * 10 9 7 33 33 H 0.96996 * 119.99835 * 5.61656 * 11 10 9 34 34 H 0.97005 * 119.99539 * 355.08246 * 14 12 11 35 35 H 1.08998 * 111.29224 * 244.43072 * 19 17 15 36 36 H 1.09001 * 111.28662 * 8.97153 * 19 17 15 37 37 H 1.08997 * 110.19114 * 95.89018 * 20 19 17 38 38 H 1.08998 * 110.19254 * 217.66742 * 20 19 17 39 39 H 1.08998 * 113.67443 * 87.07234 * 25 24 22 40 40 H 1.09005 * 113.67486 * 315.97464 * 25 24 22 41 41 H 1.09003 * 113.57105 * 139.19142 * 26 25 24 42 42 H 1.08998 * 113.57438 * 269.88753 * 26 25 24 43 43 H 1.09004 * 113.67104 * 44.00209 * 27 24 22 44 44 H 1.08995 * 113.71942 * 272.87342 * 27 24 22 45 45 H 1.08996 * 117.49906 * 214.97281 * 28 9 7 46 46 H 1.09003 * 117.49377 * 359.97438 * 28 9 7 47 47 H 1.09000 * 117.49995 * 359.97110 * 29 9 7 48 48 H 1.09003 * 117.50393 * 144.99686 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4702 2.0617 -1.3998 5 1 1.4600 2.6450 0.7261 6 1 3.5595 1.4328 0.6735 7 6 2.0046 -1.1940 -0.0005 8 1 1.4648 -2.1292 0.0189 9 6 3.5114 -1.1941 -0.0280 10 6 4.1963 -1.1157 1.3379 11 7 3.3749 -1.8048 2.3363 12 6 3.7239 -1.7681 3.6376 13 8 4.6681 -1.0905 3.9949 14 7 3.0262 -2.4824 4.5428 15 6 3.4693 -2.5287 5.9384 16 1 4.1226 -1.7011 6.2147 17 6 3.9460 -3.8854 6.3998 18 1 3.3786 -4.7313 6.0117 19 6 5.3714 -4.2284 6.8316 20 6 5.0882 -4.8608 8.2305 21 8 3.8043 -4.3235 8.6544 22 6 3.4701 -3.2918 7.7904 23 1 4.0955 -2.4393 8.0554 24 6 2.3395 -2.8300 6.9649 25 6 1.3563 -1.7255 7.3478 26 6 0.3873 -2.3581 6.3318 27 6 1.1441 -3.6830 6.5395 28 6 4.1985 -2.0210 -1.1165 29 6 4.1965 -0.4935 -1.2030 30 1 -0.4850 0.8400 0.0004 31 1 4.3165 -0.0711 1.6247 32 1 5.1751 -1.5919 1.2813 33 1 2.5800 -2.2876 2.0608 34 1 2.2307 -2.9659 4.2702 35 1 5.8266 -4.9517 6.1552 36 1 5.9850 -3.3317 6.9188 37 1 5.0332 -5.9463 8.1485 38 1 5.8681 -4.5764 8.9368 39 1 1.6908 -0.7261 7.0698 40 1 1.0098 -1.7863 8.3795 41 1 -0.6465 -2.3883 6.6759 42 1 0.4860 -1.9531 5.3247 43 1 0.7376 -4.2982 7.3423 44 1 1.3098 -4.2415 5.6183 45 1 5.1385 -2.5094 -0.8595 46 1 3.5607 -2.5656 -1.8127 47 1 3.5575 -0.0329 -1.9564 48 1 5.1353 0.0231 -1.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366616205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:10 Heat of formation + Delta-G solvation = 58.498075 kcal Electronic energy + Delta-G solvation = -28180.315217 eV Core-core repulsion = 24433.194774 eV Total energy + Delta-G solvation = -3747.120443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.44331 -39.26151 -38.23704 -37.07983 -34.66503 -33.39524 -32.50150 -32.19887 -30.84171 -26.68472 -26.17065 -25.40021 -24.67647 -23.65015 -21.90472 -21.71514 -20.75232 -20.27020 -19.32161 -18.69299 -17.56323 -17.19926 -16.36417 -16.27481 -15.61018 -15.43916 -15.14273 -14.85587 -14.60432 -14.59215 -14.00147 -13.77713 -13.10586 -13.03699 -12.86818 -12.68476 -12.50109 -12.47626 -12.25595 -12.03152 -11.65225 -11.55224 -11.39724 -11.31037 -11.18829 -10.75517 -10.64098 -10.52432 -10.45903 -10.20431 -9.80128 -9.68019 -9.60306 -9.26960 -9.17066 -8.81357 -8.67362 -8.62060 -8.01995 -6.22448 -4.27919 2.67336 3.24560 3.28139 3.36992 3.43565 3.63686 3.92131 4.19048 4.36539 4.37949 4.48967 4.53349 4.70926 4.73449 4.83833 4.93738 5.04444 5.12094 5.13801 5.25397 5.30102 5.32703 5.49891 5.58441 5.61025 5.62192 5.72412 5.72688 5.81858 5.89075 5.93334 5.97864 6.01296 6.07518 6.19103 6.29953 6.30682 6.43978 6.52710 6.70167 6.72649 6.90117 6.93313 7.06421 7.28617 7.49896 7.65390 8.34768 8.65050 8.76818 9.16473 9.41669 10.87913 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.003641 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.542783 B = 7688.362911 C = 8556.699699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.086 3.914 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.254 1.254 7 C -0.493 4.493 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.171 3.829 11 N -0.712 5.712 12 C 0.701 3.299 13 O -0.610 6.610 14 N -0.735 5.735 15 C 0.188 3.812 16 H 0.129 0.871 17 C -0.190 4.190 18 H 0.114 0.886 19 C -0.141 4.141 20 C 0.056 3.944 21 O -0.361 6.361 22 C 0.052 3.948 23 H 0.071 0.929 24 C -0.075 4.075 25 C -0.126 4.126 26 C -0.140 4.140 27 C -0.113 4.113 28 C -0.179 4.179 29 C -0.196 4.196 30 H 0.266 0.734 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.407 0.593 34 H 0.397 0.603 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -8.436 13.894 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.118 4.118 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.179 1.179 7 C -0.530 4.530 8 H 0.096 0.904 9 C -0.016 4.016 10 C 0.046 3.954 11 N -0.367 5.367 12 C 0.401 3.599 13 O -0.490 6.490 14 N -0.390 5.390 15 C 0.081 3.919 16 H 0.147 0.853 17 C -0.210 4.210 18 H 0.132 0.868 19 C -0.179 4.179 20 C -0.019 4.019 21 O -0.280 6.280 22 C -0.008 4.008 23 H 0.089 0.911 24 C -0.076 4.076 25 C -0.163 4.163 26 C -0.177 4.177 27 C -0.150 4.150 28 C -0.216 4.216 29 C -0.234 4.234 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.244 0.756 34 H 0.232 0.768 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.011 -7.778 14.327 17.375 hybrid contribution -0.170 0.514 -0.495 0.734 sum 5.840 -7.265 13.832 16.679 Atomic orbital electron populations 1.69881 1.06375 1.27362 1.49256 1.24934 0.94510 0.99125 0.93248 0.86887 0.80987 0.83223 0.78343 1.20486 1.22171 1.17870 1.20110 0.86069 0.94389 1.52473 0.90363 1.19628 0.95395 1.00451 0.86152 1.20884 0.90999 0.96060 0.87417 1.45119 1.30960 1.56543 1.04063 1.16034 0.82501 0.80032 0.81364 1.90841 1.32085 1.46156 1.79909 1.44942 1.31521 1.54860 1.07720 1.21916 0.94412 0.96256 0.79338 0.85315 1.25058 0.96865 0.98977 1.00117 0.86786 1.22622 0.96977 1.02028 0.96246 1.24176 0.84544 0.98547 0.94667 1.87656 1.37672 1.50988 1.51697 1.22418 0.99251 0.91969 0.87125 0.91114 1.22616 0.92329 0.98348 0.94330 1.22773 0.95947 0.97953 0.99669 1.22869 0.98496 0.95956 1.00376 1.22665 0.94090 0.96640 1.01629 1.22907 1.00997 0.92919 1.04781 1.22950 1.01495 0.95045 1.03898 0.92444 0.92139 0.93976 0.75561 0.76807 0.90178 0.90139 0.90280 0.91165 0.90644 0.89696 0.91005 0.89368 0.89119 0.90943 0.90871 0.89509 0.89277 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.96 55.43 0.77 -24.63 16 2 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 21.20 25.16 -169.99 -4.28 16.93 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.25 -6.00 5.30 56.52 0.30 -5.70 16 7 C -0.49 -12.40 7.79 -34.44 -0.27 -12.67 16 8 H 0.08 2.11 8.06 -52.49 -0.42 1.68 16 9 C -0.02 -0.32 1.24 -155.67 -0.19 -0.52 16 10 C 0.17 3.58 5.63 -4.04 -0.02 3.55 16 11 N -0.71 -13.84 5.29 -65.22 -0.34 -14.18 16 12 C 0.70 13.16 8.55 -86.92 -0.74 12.41 16 13 O -0.61 -13.40 15.89 5.29 0.08 -13.32 16 14 N -0.74 -10.59 5.11 -70.22 -0.36 -10.95 16 15 C 0.19 2.40 3.93 -79.22 -0.31 2.09 16 16 H 0.13 1.86 6.87 -51.93 -0.36 1.50 16 17 C -0.19 -2.14 4.28 -100.26 -0.43 -2.57 16 18 H 0.11 1.26 7.08 -51.93 -0.37 0.89 16 19 C -0.14 -1.41 6.83 -25.15 -0.17 -1.59 16 20 C 0.06 0.52 7.89 38.82 0.31 0.83 16 21 O -0.36 -4.35 11.27 -28.75 -0.32 -4.68 16 22 C 0.05 0.59 4.98 -38.04 -0.19 0.40 16 23 H 0.07 0.82 7.29 -51.93 -0.38 0.44 16 24 C -0.07 -0.82 1.14 -167.62 -0.19 -1.01 16 25 C -0.13 -1.33 7.90 -26.34 -0.21 -1.54 16 26 C -0.14 -1.46 7.79 -25.72 -0.20 -1.66 16 27 C -0.11 -1.11 6.61 -26.27 -0.17 -1.29 16 28 C -0.18 -3.41 9.88 -26.74 -0.26 -3.68 16 29 C -0.20 -3.99 7.60 -26.74 -0.20 -4.19 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.06 1.39 6.39 -51.93 -0.33 1.06 16 32 H 0.04 0.83 7.89 -51.93 -0.41 0.42 16 33 H 0.41 7.72 7.30 -40.82 -0.30 7.42 16 34 H 0.40 5.04 6.79 -40.82 -0.28 4.76 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.05 7.60 -51.93 -0.39 0.66 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.68 6.78 -51.93 -0.35 0.33 16 45 H 0.07 1.24 8.04 -51.93 -0.42 0.83 16 46 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 47 H 0.09 1.90 7.22 -51.93 -0.37 1.53 16 48 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -30.01 370.74 -10.07 -40.08 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -7.85 Total: 14.38 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.36 Total: -9.22 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.07 Total: -49.76 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.24 Total: -17.99 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.28 Total: 16.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.01 -10.07 -40.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366616205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.573 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds