Wall clock time and date at job start Tue Mar 31 2020 12:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99689 * 2 1 4 4 H 1.48503 * 109.46832 * 271.24350 * 3 2 1 5 5 H 1.48493 * 109.47278 * 31.24309 * 3 2 1 6 6 H 1.48494 * 109.46854 * 151.24605 * 3 2 1 7 7 C 1.37874 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99860 * 358.78611 * 7 2 1 9 9 C 1.50700 * 120.00273 * 178.79290 * 7 2 1 10 10 C 1.53002 * 115.55127 * 87.32287 * 9 7 2 11 11 N 1.46507 * 109.46988 * 32.58336 * 10 9 7 12 12 C 1.34775 * 120.00043 * 185.60784 * 11 10 9 13 13 O 1.21587 * 120.00240 * 4.91537 * 12 11 10 14 14 N 1.34777 * 120.00152 * 184.91042 * 12 11 10 15 15 C 1.46492 * 120.00241 * 175.08078 * 14 12 11 16 16 H 1.08999 * 113.50210 * 20.91682 * 15 14 12 17 17 C 1.51018 * 114.51566 * 246.79385 * 15 14 12 18 18 H 1.09002 * 115.09429 * 321.86224 * 17 15 14 19 19 C 1.52838 * 125.61364 * 115.35016 * 17 15 14 20 20 C 1.56112 * 100.07222 * 126.72417 * 19 17 15 21 21 O 1.45485 * 105.75653 * 336.81686 * 20 19 17 22 22 C 1.38651 * 107.81648 * 348.90353 * 21 20 19 23 23 H 1.09002 * 106.99334 * 285.02667 * 22 21 20 24 24 C 1.47416 * 140.07683 * 130.24451 * 22 21 20 25 25 C 1.52749 * 125.43990 * 100.16972 * 24 22 21 26 26 C 1.53990 * 86.70714 * 201.52338 * 25 24 22 27 27 C 1.52888 * 125.49826 * 342.63182 * 24 22 21 28 28 C 1.52994 * 117.52082 * 233.02847 * 9 7 2 29 29 C 1.52995 * 117.49917 * 301.65933 * 9 7 2 30 30 H 0.96995 * 119.99948 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47470 * 272.58799 * 10 9 7 32 32 H 1.08996 * 109.47180 * 152.58317 * 10 9 7 33 33 H 0.96996 * 119.99835 * 5.61656 * 11 10 9 34 34 H 0.97005 * 119.99539 * 355.08246 * 14 12 11 35 35 H 1.08998 * 111.29224 * 244.43072 * 19 17 15 36 36 H 1.09001 * 111.28662 * 8.97153 * 19 17 15 37 37 H 1.08997 * 110.19114 * 95.89018 * 20 19 17 38 38 H 1.08998 * 110.19254 * 217.66742 * 20 19 17 39 39 H 1.08998 * 113.67443 * 87.07234 * 25 24 22 40 40 H 1.09005 * 113.67486 * 315.97464 * 25 24 22 41 41 H 1.09003 * 113.57105 * 139.19142 * 26 25 24 42 42 H 1.08998 * 113.57438 * 269.88753 * 26 25 24 43 43 H 1.09004 * 113.67104 * 44.00209 * 27 24 22 44 44 H 1.08995 * 113.71942 * 272.87342 * 27 24 22 45 45 H 1.08996 * 117.49906 * 214.97281 * 28 9 7 46 46 H 1.09003 * 117.49377 * 359.97438 * 28 9 7 47 47 H 1.09000 * 117.49995 * 359.97110 * 29 9 7 48 48 H 1.09003 * 117.50393 * 144.99686 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4702 2.0617 -1.3998 5 1 1.4600 2.6450 0.7261 6 1 3.5595 1.4328 0.6735 7 6 2.0046 -1.1940 -0.0005 8 1 1.4648 -2.1292 0.0189 9 6 3.5114 -1.1941 -0.0280 10 6 4.1963 -1.1157 1.3379 11 7 3.3749 -1.8048 2.3363 12 6 3.7239 -1.7681 3.6376 13 8 4.6681 -1.0905 3.9949 14 7 3.0262 -2.4824 4.5428 15 6 3.4693 -2.5287 5.9384 16 1 4.1226 -1.7011 6.2147 17 6 3.9460 -3.8854 6.3998 18 1 3.3786 -4.7313 6.0117 19 6 5.3714 -4.2284 6.8316 20 6 5.0882 -4.8608 8.2305 21 8 3.8043 -4.3235 8.6544 22 6 3.4701 -3.2918 7.7904 23 1 4.0955 -2.4393 8.0554 24 6 2.3395 -2.8300 6.9649 25 6 1.3563 -1.7255 7.3478 26 6 0.3873 -2.3581 6.3318 27 6 1.1441 -3.6830 6.5395 28 6 4.1985 -2.0210 -1.1165 29 6 4.1965 -0.4935 -1.2030 30 1 -0.4850 0.8400 0.0004 31 1 4.3165 -0.0711 1.6247 32 1 5.1751 -1.5919 1.2813 33 1 2.5800 -2.2876 2.0608 34 1 2.2307 -2.9659 4.2702 35 1 5.8266 -4.9517 6.1552 36 1 5.9850 -3.3317 6.9188 37 1 5.0332 -5.9463 8.1485 38 1 5.8681 -4.5764 8.9368 39 1 1.6908 -0.7261 7.0698 40 1 1.0098 -1.7863 8.3795 41 1 -0.6465 -2.3883 6.6759 42 1 0.4860 -1.9531 5.3247 43 1 0.7376 -4.2982 7.3423 44 1 1.3098 -4.2415 5.6183 45 1 5.1385 -2.5094 -0.8595 46 1 3.5607 -2.5656 -1.8127 47 1 3.5575 -0.0329 -1.9564 48 1 5.1353 0.0231 -1.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366616205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:09 Heat of formation + Delta-G solvation = 39.286434 kcal Electronic energy + Delta-G solvation = -28181.148296 eV Core-core repulsion = 24433.194774 eV Total energy + Delta-G solvation = -3747.953522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.37503 -40.72335 -39.17757 -38.69739 -35.70606 -34.97196 -34.23416 -33.69982 -31.66735 -28.34532 -27.22777 -27.00688 -25.53102 -24.75070 -23.30921 -22.76763 -21.83656 -21.53830 -21.07790 -19.72418 -18.92803 -18.42057 -17.96696 -17.17344 -16.93550 -16.66327 -16.31165 -16.26830 -16.04542 -15.66967 -15.40006 -14.88283 -14.81265 -14.59720 -14.32745 -14.07576 -13.77558 -13.61842 -13.30700 -13.09080 -12.95761 -12.63635 -12.51207 -12.47965 -12.22693 -12.14810 -12.12782 -11.99351 -11.62901 -11.55426 -11.33626 -11.30483 -10.95057 -10.65927 -10.52830 -10.39032 -10.15497 -10.07961 -9.51703 -8.29811 -6.35155 1.32343 1.39983 1.49457 1.66493 2.06919 2.19177 2.36708 2.98569 3.05431 3.16551 3.28629 3.42565 3.51298 3.63026 3.74438 3.87786 4.06281 4.09319 4.16925 4.30654 4.36407 4.37545 4.42724 4.43981 4.49061 4.53261 4.65798 4.76761 4.82287 4.82655 4.86184 4.88611 4.90017 5.00721 5.05816 5.07359 5.10545 5.15745 5.23941 5.28057 5.44206 5.50671 5.55669 5.66155 5.77816 6.05719 6.14875 6.30786 6.73171 7.20608 7.36304 7.67211 8.83535 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.003641 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.542783 B = 7688.362911 C = 8556.699699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.041 3.959 3 Si 0.919 3.081 4 H -0.270 1.270 5 H -0.306 1.306 6 H -0.245 1.245 7 C -0.475 4.475 8 H 0.052 0.948 9 C -0.039 4.039 10 C 0.179 3.821 11 N -0.715 5.715 12 C 0.699 3.301 13 O -0.643 6.643 14 N -0.719 5.719 15 C 0.175 3.825 16 H 0.110 0.890 17 C -0.187 4.187 18 H 0.121 0.879 19 C -0.141 4.141 20 C 0.057 3.943 21 O -0.377 6.377 22 C 0.055 3.945 23 H 0.065 0.935 24 C -0.067 4.067 25 C -0.127 4.127 26 C -0.141 4.141 27 C -0.105 4.105 28 C -0.154 4.154 29 C -0.197 4.197 30 H 0.264 0.736 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.408 0.592 34 H 0.406 0.594 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.670 -9.828 14.483 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.158 4.158 3 Si 0.747 3.253 4 H -0.196 1.196 5 H -0.234 1.234 6 H -0.168 1.168 7 C -0.512 4.512 8 H 0.070 0.930 9 C -0.041 4.041 10 C 0.054 3.946 11 N -0.370 5.370 12 C 0.399 3.601 13 O -0.526 6.526 14 N -0.374 5.374 15 C 0.069 3.931 16 H 0.127 0.873 17 C -0.207 4.207 18 H 0.139 0.861 19 C -0.179 4.179 20 C -0.018 4.018 21 O -0.296 6.296 22 C -0.004 4.004 23 H 0.082 0.918 24 C -0.068 4.068 25 C -0.164 4.164 26 C -0.178 4.178 27 C -0.142 4.142 28 C -0.191 4.191 29 C -0.234 4.234 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.246 0.754 34 H 0.243 0.757 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.121 0.879 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.292 -9.203 14.927 18.992 hybrid contribution -0.554 0.867 -0.648 1.216 sum 6.738 -8.336 14.280 17.855 Atomic orbital electron populations 1.69986 1.07746 1.27727 1.52043 1.25511 0.94864 1.01704 0.93771 0.86207 0.80260 0.80280 0.78588 1.19567 1.23410 1.16840 1.20229 0.88095 0.92909 1.50009 0.92960 1.19537 0.93440 1.03703 0.87385 1.20727 0.91840 0.95073 0.86931 1.45061 1.30964 1.56601 1.04330 1.16159 0.82402 0.80061 0.81486 1.90815 1.33698 1.47683 1.80370 1.44827 1.31122 1.53658 1.07799 1.22014 0.95716 0.96848 0.78541 0.87258 1.25039 0.98056 0.98005 0.99566 0.86074 1.22647 0.96100 1.02091 0.97034 1.24328 0.83859 0.99369 0.94263 1.87633 1.38890 1.51016 1.52104 1.22306 0.99208 0.91824 0.87098 0.91767 1.22550 0.92134 0.98870 0.93280 1.22819 0.95899 0.97168 1.00536 1.22830 0.99326 0.96322 0.99316 1.22678 0.92905 0.96325 1.02268 1.22952 1.01549 0.92300 1.02324 1.23000 1.01874 0.96277 1.02272 0.92726 0.94454 0.92401 0.75446 0.75691 0.89220 0.90887 0.88546 0.89755 0.91972 0.88249 0.89780 0.91207 0.87820 0.90386 0.87876 0.89678 0.90509 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.43 13.96 21.45 0.30 -54.13 16 2 C 0.04 2.20 5.47 84.65 0.46 2.66 16 3 Si 0.92 43.66 25.16 68.60 1.73 45.38 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.31 -15.03 7.11 99.48 0.71 -14.32 16 6 H -0.24 -11.16 5.30 99.48 0.53 -10.63 16 7 C -0.47 -23.89 7.79 25.60 0.20 -23.69 16 8 H 0.05 2.86 8.06 -2.91 -0.02 2.83 16 9 C -0.04 -1.65 1.24 -52.93 -0.07 -1.71 16 10 C 0.18 7.27 5.63 86.38 0.49 7.76 16 11 N -0.72 -27.48 5.29 -478.53 -2.53 -30.01 16 12 C 0.70 26.14 8.55 179.06 1.53 27.68 16 13 O -0.64 -28.35 15.89 -3.99 -0.06 -28.41 16 14 N -0.72 -20.50 5.11 -494.32 -2.53 -23.03 16 15 C 0.17 4.42 3.93 37.68 0.15 4.57 16 16 H 0.11 3.23 6.87 -2.39 -0.02 3.22 16 17 C -0.19 -3.95 4.28 -17.04 -0.07 -4.02 16 18 H 0.12 2.42 7.08 -2.39 -0.02 2.40 16 19 C -0.14 -2.60 6.83 31.62 0.22 -2.39 16 20 C 0.06 0.92 7.89 73.06 0.58 1.50 16 21 O -0.38 -8.36 11.27 -125.78 -1.42 -9.78 16 22 C 0.06 1.19 4.98 23.27 0.12 1.31 16 23 H 0.06 1.46 7.29 -2.39 -0.02 1.44 16 24 C -0.07 -1.39 1.14 -60.68 -0.07 -1.46 16 25 C -0.13 -2.59 7.90 30.85 0.24 -2.35 16 26 C -0.14 -2.80 7.79 31.25 0.24 -2.55 16 27 C -0.10 -1.87 6.61 30.89 0.20 -1.67 16 28 C -0.15 -5.44 9.88 30.59 0.30 -5.14 16 29 C -0.20 -7.51 7.60 30.59 0.23 -7.28 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.04 1.68 6.39 -2.39 -0.02 1.67 16 32 H 0.06 2.16 7.89 -2.39 -0.02 2.14 16 33 H 0.41 15.43 7.30 -92.71 -0.68 14.75 16 34 H 0.41 10.09 6.79 -92.70 -0.63 9.46 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.66 7.60 -2.39 -0.02 1.64 16 43 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.08 1.32 6.78 -2.39 -0.02 1.30 16 45 H 0.10 3.06 8.04 -2.39 -0.02 3.04 16 46 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.08 3.13 7.22 -2.39 -0.02 3.12 16 48 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -64.37 370.74 -0.27 -64.64 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -0.51 Total: 42.13 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 4.76 Total: -6.79 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -4.76 Total: -107.17 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.48 Total: -38.19 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.73 Total: 45.38 kcal Total: -64.37 -0.27 -64.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366616205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.926 kcal (2) G-P(sol) polarization free energy of solvation -64.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds