Wall clock time and date at job start Tue Mar 31 2020 13:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00146 * 2 1 4 4 H 1.48493 * 109.47061 * 89.99939 * 3 2 1 5 5 H 1.48499 * 109.47177 * 209.99952 * 3 2 1 6 6 H 1.48499 * 109.46813 * 329.99883 * 3 2 1 7 7 C 1.37885 * 120.00030 * 180.27669 * 2 1 3 8 8 H 1.08000 * 119.99835 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99954 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.49677 * 299.93341 * 9 7 2 11 11 C 1.53037 * 109.50011 * 59.99710 * 9 7 2 12 12 C 1.53040 * 109.54102 * 181.31658 * 11 9 7 13 13 C 1.53195 * 109.31242 * 298.64217 * 12 11 9 14 14 N 1.46923 * 108.77940 * 54.63067 * 13 12 11 15 15 C 1.34773 * 120.63342 * 126.39303 * 14 13 12 16 16 O 1.21277 * 120.00182 * 174.95006 * 15 14 13 17 17 C 1.50703 * 119.99746 * 354.95650 * 15 14 13 18 18 C 1.50703 * 112.84586 * 294.73474 * 17 15 14 19 19 O 1.21284 * 119.99497 * 125.33473 * 18 17 15 20 20 N 1.34769 * 120.00282 * 305.33535 * 18 17 15 21 21 C 1.46509 * 120.00233 * 175.01685 * 20 18 17 22 22 C 1.52996 * 117.49885 * 223.74874 * 21 20 18 23 23 C 1.52995 * 117.50030 * 155.08510 * 21 20 18 24 24 C 1.53779 * 113.61339 * 163.43258 * 17 15 14 25 25 C 1.53783 * 87.08150 * 220.01508 * 24 17 15 26 26 C 1.53773 * 113.61585 * 65.93370 * 17 15 14 27 27 C 1.46933 * 118.73779 * 306.39239 * 14 13 12 28 28 H 0.97000 * 119.99908 * 359.72808 * 1 2 3 29 29 H 1.09000 * 109.46323 * 301.34372 * 11 9 7 30 30 H 1.09003 * 109.45874 * 61.30107 * 11 9 7 31 31 H 1.09001 * 109.49478 * 58.58352 * 12 11 9 32 32 H 1.08994 * 109.50243 * 178.65722 * 12 11 9 33 33 H 1.09000 * 109.58711 * 174.42115 * 13 12 11 34 34 H 1.09007 * 109.58162 * 294.84334 * 13 12 11 35 35 H 0.96998 * 120.00148 * 355.02089 * 20 18 17 36 36 H 1.09002 * 115.54521 * 9.41912 * 21 20 18 37 37 H 1.08996 * 117.49857 * 359.97438 * 22 21 20 38 38 H 1.09000 * 117.49657 * 145.02208 * 22 21 20 39 39 H 1.08998 * 117.50127 * 214.98029 * 23 21 20 40 40 H 1.09002 * 117.49735 * 359.97438 * 23 21 20 41 41 H 1.08998 * 113.61760 * 334.56644 * 24 17 15 42 42 H 1.09001 * 113.61350 * 105.47004 * 24 17 15 43 43 H 1.08995 * 113.61234 * 270.88862 * 25 24 17 44 44 H 1.08997 * 113.69088 * 139.99265 * 25 24 17 45 45 H 1.09001 * 113.61707 * 254.52716 * 26 17 15 46 46 H 1.09004 * 113.61655 * 25.43232 * 26 17 15 47 47 H 1.09000 * 109.58412 * 293.82484 * 27 14 13 48 48 H 1.09001 * 109.58674 * 173.39506 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0062 9 6 1.2510 -2.4992 -0.0127 10 1 0.6248 -2.5624 0.8773 11 6 0.3714 -2.5746 -1.2627 12 6 -0.4190 -3.8850 -1.2541 13 6 0.5570 -5.0656 -1.2776 14 7 1.4998 -4.9222 -0.1599 15 6 1.6768 -5.9256 0.7222 16 8 2.5230 -5.8316 1.5859 17 6 0.8233 -7.1646 0.6353 18 6 -0.6325 -6.8930 0.9144 19 8 -1.4763 -7.2224 0.1079 20 7 -0.9968 -6.2841 2.0602 21 6 -2.3987 -5.9216 2.2836 22 6 -2.6857 -4.5385 2.8713 23 6 -2.8722 -5.7903 3.7325 24 6 1.3904 -8.3595 1.4197 25 6 0.9451 -9.2430 0.2423 26 6 1.0626 -7.9892 -0.6404 27 6 2.2460 -3.6640 -0.0222 28 1 -0.4850 0.8400 0.0040 29 1 -0.3211 -1.7328 -1.2708 30 1 1.0003 -2.5357 -2.1521 31 1 -1.0295 -3.9358 -0.3525 32 1 -1.0630 -3.9273 -2.1324 33 1 0.0041 -5.9990 -1.1718 34 1 1.1050 -5.0678 -2.2199 35 1 -0.3309 -6.0857 2.7370 36 1 -3.1079 -6.3165 1.5561 37 1 -1.8316 -3.8984 3.0922 38 1 -3.5841 -4.0236 2.5309 39 1 -3.8931 -6.0983 3.9582 40 1 -2.1408 -5.9740 4.5195 41 1 2.4716 -8.3213 1.5524 42 1 0.8562 -8.5662 2.3470 43 1 -0.0746 -9.6159 0.3376 44 1 1.6599 -10.0253 -0.0130 45 1 0.2637 -7.8970 -1.3763 46 1 2.0542 -7.8497 -1.0710 47 1 2.9316 -3.5520 -0.8621 48 1 2.8075 -3.6726 0.9120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912832.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:05 Heat of formation + Delta-G solvation = -28.647483 kcal Electronic energy + Delta-G solvation = -29233.926629 eV Core-core repulsion = 25483.027272 eV Total energy + Delta-G solvation = -3750.899358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36991 -39.05448 -37.84911 -36.94416 -36.26090 -33.51301 -32.85281 -31.36314 -30.33484 -27.62425 -25.91668 -24.98491 -24.43901 -22.83955 -22.41124 -21.67649 -21.07900 -20.56595 -19.27432 -18.64732 -17.51107 -16.63946 -16.42835 -16.07334 -15.67387 -15.14454 -14.69949 -14.65069 -14.54750 -14.15058 -13.90821 -13.43619 -13.31116 -12.90696 -12.78954 -12.68625 -12.55796 -12.14215 -12.10021 -11.93924 -11.62257 -11.42657 -11.32199 -11.09789 -11.00332 -10.84834 -10.74037 -10.57682 -10.54222 -10.26533 -9.97308 -9.95758 -9.78490 -9.49014 -9.25445 -8.84440 -8.79266 -8.41584 -7.95876 -6.04603 -4.12028 2.38446 2.76371 3.01366 3.27654 3.34359 3.36447 3.43493 3.86440 4.36236 4.39940 4.41176 4.53498 4.65574 4.69414 4.73967 4.91595 4.93637 5.23035 5.25425 5.45103 5.53324 5.54966 5.66267 5.66935 5.71575 5.76444 5.82563 5.90853 5.91987 5.95281 6.07594 6.11149 6.22776 6.33915 6.36743 6.43907 6.49310 6.62602 6.79025 6.90586 7.15317 7.31393 7.37689 7.66139 7.85355 7.93195 8.04866 8.10110 8.32825 8.49253 8.91307 9.53012 11.00644 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.004629 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.875858 B = 6047.967257 C = 7029.849613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.043 3.957 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.130 4.130 13 C 0.096 3.904 14 N -0.591 5.591 15 C 0.526 3.474 16 O -0.544 6.544 17 C -0.138 4.138 18 C 0.558 3.442 19 O -0.529 6.529 20 N -0.694 5.694 21 C 0.079 3.921 22 C -0.186 4.186 23 C -0.191 4.191 24 C -0.102 4.102 25 C -0.140 4.140 26 C -0.110 4.110 27 C 0.116 3.884 28 H 0.260 0.740 29 H 0.095 0.905 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.405 0.595 36 H 0.138 0.862 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.056 0.944 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 -15.627 2.007 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.024 3.976 10 H 0.046 0.954 11 C -0.150 4.150 12 C -0.169 4.169 13 C -0.026 4.026 14 N -0.322 5.322 15 C 0.312 3.688 16 O -0.423 6.423 17 C -0.145 4.145 18 C 0.343 3.657 19 O -0.405 6.405 20 N -0.343 5.343 21 C -0.027 4.027 22 C -0.225 4.225 23 C -0.229 4.229 24 C -0.140 4.140 25 C -0.177 4.177 26 C -0.148 4.148 27 C -0.005 4.005 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.240 0.760 36 H 0.156 0.844 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.075 0.925 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.887 -15.652 1.840 16.233 hybrid contribution 0.686 1.299 0.321 1.504 sum -3.201 -14.353 2.161 14.864 Atomic orbital electron populations 1.69873 1.05876 1.26472 1.50368 1.24925 0.94840 0.99036 0.94894 0.86590 0.79887 0.83378 0.78136 1.20688 1.19871 1.21236 1.21062 0.92963 0.90248 1.51094 0.92505 1.18942 0.92811 0.91032 0.94785 0.95430 1.21635 0.99428 0.95447 0.98486 1.21944 0.97531 0.96376 1.01007 1.22025 0.91444 1.00231 0.88934 1.48286 1.41620 1.15384 1.26916 1.19775 0.83899 0.83339 0.81809 1.90669 1.35314 1.80050 1.36239 1.22342 0.93263 0.95772 1.03085 1.19364 0.88816 0.76448 0.81064 1.90678 1.51885 1.51588 1.46340 1.45284 1.09027 1.60154 1.19815 1.21598 0.83972 1.00013 0.97086 1.23460 1.04386 0.91315 1.03303 1.23385 1.02812 1.02848 0.93856 1.22801 1.02480 0.91388 0.97321 1.22882 1.02226 0.96679 0.95962 1.22910 1.03301 0.93821 0.94720 1.22070 0.95166 0.81734 1.01515 0.92976 0.88635 0.94619 0.92567 0.92532 0.89841 0.91834 0.75981 0.84442 0.87908 0.87771 0.87981 0.88569 0.87928 0.90809 0.89611 0.90561 0.88997 0.88911 0.92523 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 11.31 55.43 0.63 -23.95 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -13.74 8.56 -34.44 -0.29 -14.04 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.05 2.25 -91.65 -0.21 0.84 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.67 16 12 C -0.13 -2.48 6.08 -26.61 -0.16 -2.64 16 13 C 0.10 1.63 5.63 -3.71 -0.02 1.61 16 14 N -0.59 -10.94 2.97 -172.76 -0.51 -11.46 16 15 C 0.53 9.23 6.50 -10.99 -0.07 9.16 16 16 O -0.54 -10.91 15.58 5.56 0.09 -10.83 16 17 C -0.14 -1.94 0.56 -156.00 -0.09 -2.03 16 18 C 0.56 8.26 5.39 -10.99 -0.06 8.20 16 19 O -0.53 -8.71 14.58 5.55 0.08 -8.63 16 20 N -0.69 -9.49 5.46 -53.80 -0.29 -9.79 16 21 C 0.08 0.99 6.44 -67.93 -0.44 0.55 16 22 C -0.19 -2.29 10.46 -26.69 -0.28 -2.57 16 23 C -0.19 -1.91 10.46 -26.69 -0.28 -2.19 16 24 C -0.10 -1.19 6.89 -25.92 -0.18 -1.37 16 25 C -0.14 -1.43 7.80 -25.92 -0.20 -1.64 16 26 C -0.11 -1.32 5.68 -25.92 -0.15 -1.47 16 27 C 0.12 2.47 5.64 -3.71 -0.02 2.45 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.10 2.45 6.04 -51.93 -0.31 2.13 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.32 3.12 -51.93 -0.16 1.16 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.41 5.37 8.74 -40.82 -0.36 5.01 16 36 H 0.14 1.78 7.39 -51.93 -0.38 1.40 16 37 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.23 7.71 -51.93 -0.40 0.83 16 42 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.14 6.51 -51.93 -0.34 0.81 16 46 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.08 1.77 7.04 -51.93 -0.37 1.41 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -29.67 375.85 -9.82 -39.49 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.77 Total: 9.78 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.67 Total: -6.14 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.18 Total: -45.19 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.17 Total: -19.46 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.67 -9.82 -39.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912832.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.839 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds