Wall clock time and date at job start Tue Mar 31 2020 13:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00146 * 2 1 4 4 H 1.48493 * 109.47061 * 89.99939 * 3 2 1 5 5 H 1.48499 * 109.47177 * 209.99952 * 3 2 1 6 6 H 1.48499 * 109.46813 * 329.99883 * 3 2 1 7 7 C 1.37885 * 120.00030 * 180.27669 * 2 1 3 8 8 H 1.08000 * 119.99835 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99954 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.49677 * 299.93341 * 9 7 2 11 11 C 1.53037 * 109.50011 * 59.99710 * 9 7 2 12 12 C 1.53040 * 109.54102 * 181.31658 * 11 9 7 13 13 C 1.53195 * 109.31242 * 298.64217 * 12 11 9 14 14 N 1.46923 * 108.77940 * 54.63067 * 13 12 11 15 15 C 1.34773 * 120.63342 * 126.39303 * 14 13 12 16 16 O 1.21277 * 120.00182 * 174.95006 * 15 14 13 17 17 C 1.50703 * 119.99746 * 354.95650 * 15 14 13 18 18 C 1.50703 * 112.84586 * 294.73474 * 17 15 14 19 19 O 1.21284 * 119.99497 * 125.33473 * 18 17 15 20 20 N 1.34769 * 120.00282 * 305.33535 * 18 17 15 21 21 C 1.46509 * 120.00233 * 175.01685 * 20 18 17 22 22 C 1.52996 * 117.49885 * 223.74874 * 21 20 18 23 23 C 1.52995 * 117.50030 * 155.08510 * 21 20 18 24 24 C 1.53779 * 113.61339 * 163.43258 * 17 15 14 25 25 C 1.53783 * 87.08150 * 220.01508 * 24 17 15 26 26 C 1.53773 * 113.61585 * 65.93370 * 17 15 14 27 27 C 1.46933 * 118.73779 * 306.39239 * 14 13 12 28 28 H 0.97000 * 119.99908 * 359.72808 * 1 2 3 29 29 H 1.09000 * 109.46323 * 301.34372 * 11 9 7 30 30 H 1.09003 * 109.45874 * 61.30107 * 11 9 7 31 31 H 1.09001 * 109.49478 * 58.58352 * 12 11 9 32 32 H 1.08994 * 109.50243 * 178.65722 * 12 11 9 33 33 H 1.09000 * 109.58711 * 174.42115 * 13 12 11 34 34 H 1.09007 * 109.58162 * 294.84334 * 13 12 11 35 35 H 0.96998 * 120.00148 * 355.02089 * 20 18 17 36 36 H 1.09002 * 115.54521 * 9.41912 * 21 20 18 37 37 H 1.08996 * 117.49857 * 359.97438 * 22 21 20 38 38 H 1.09000 * 117.49657 * 145.02208 * 22 21 20 39 39 H 1.08998 * 117.50127 * 214.98029 * 23 21 20 40 40 H 1.09002 * 117.49735 * 359.97438 * 23 21 20 41 41 H 1.08998 * 113.61760 * 334.56644 * 24 17 15 42 42 H 1.09001 * 113.61350 * 105.47004 * 24 17 15 43 43 H 1.08995 * 113.61234 * 270.88862 * 25 24 17 44 44 H 1.08997 * 113.69088 * 139.99265 * 25 24 17 45 45 H 1.09001 * 113.61707 * 254.52716 * 26 17 15 46 46 H 1.09004 * 113.61655 * 25.43232 * 26 17 15 47 47 H 1.09000 * 109.58412 * 293.82484 * 27 14 13 48 48 H 1.09001 * 109.58674 * 173.39506 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0062 9 6 1.2510 -2.4992 -0.0127 10 1 0.6248 -2.5624 0.8773 11 6 0.3714 -2.5746 -1.2627 12 6 -0.4190 -3.8850 -1.2541 13 6 0.5570 -5.0656 -1.2776 14 7 1.4998 -4.9222 -0.1599 15 6 1.6768 -5.9256 0.7222 16 8 2.5230 -5.8316 1.5859 17 6 0.8233 -7.1646 0.6353 18 6 -0.6325 -6.8930 0.9144 19 8 -1.4763 -7.2224 0.1079 20 7 -0.9968 -6.2841 2.0602 21 6 -2.3987 -5.9216 2.2836 22 6 -2.6857 -4.5385 2.8713 23 6 -2.8722 -5.7903 3.7325 24 6 1.3904 -8.3595 1.4197 25 6 0.9451 -9.2430 0.2423 26 6 1.0626 -7.9892 -0.6404 27 6 2.2460 -3.6640 -0.0222 28 1 -0.4850 0.8400 0.0040 29 1 -0.3211 -1.7328 -1.2708 30 1 1.0003 -2.5357 -2.1521 31 1 -1.0295 -3.9358 -0.3525 32 1 -1.0630 -3.9273 -2.1324 33 1 0.0041 -5.9990 -1.1718 34 1 1.1050 -5.0678 -2.2199 35 1 -0.3309 -6.0857 2.7370 36 1 -3.1079 -6.3165 1.5561 37 1 -1.8316 -3.8984 3.0922 38 1 -3.5841 -4.0236 2.5309 39 1 -3.8931 -6.0983 3.9582 40 1 -2.1408 -5.9740 4.5195 41 1 2.4716 -8.3213 1.5524 42 1 0.8562 -8.5662 2.3470 43 1 -0.0746 -9.6159 0.3376 44 1 1.6599 -10.0253 -0.0130 45 1 0.2637 -7.8970 -1.3763 46 1 2.0542 -7.8497 -1.0710 47 1 2.9316 -3.5520 -0.8621 48 1 2.8075 -3.6726 0.9120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597912832.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:04 Heat of formation + Delta-G solvation = -45.884698 kcal Electronic energy + Delta-G solvation = -29234.674091 eV Core-core repulsion = 25483.027272 eV Total energy + Delta-G solvation = -3751.646819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.56523 -40.40844 -39.04345 -38.32616 -37.45343 -35.38982 -33.94864 -33.11166 -32.10350 -28.85593 -27.18005 -26.57410 -25.98615 -23.92665 -23.38379 -23.32527 -22.15922 -22.02028 -20.47394 -20.12170 -18.97967 -18.27803 -17.70872 -17.32274 -17.10983 -16.62712 -16.21331 -15.90429 -15.59510 -15.54420 -15.24048 -15.07134 -14.69588 -14.60705 -14.29146 -13.84057 -13.74916 -13.70928 -13.40952 -13.17383 -12.90072 -12.76036 -12.59653 -12.56272 -12.44269 -12.39368 -12.00416 -11.93864 -11.87513 -11.69680 -11.52497 -11.47705 -11.28950 -11.01718 -10.87345 -10.62441 -10.44614 -9.85383 -9.57946 -8.11473 -6.26808 1.16965 1.40501 1.41737 1.46123 1.51656 1.89065 2.00559 2.42639 2.90495 3.15337 3.32141 3.33531 3.46128 3.51097 3.75334 3.76390 3.97361 3.98141 4.00773 4.14557 4.27527 4.35418 4.47552 4.56167 4.64707 4.70226 4.71481 4.74270 4.75892 4.79830 4.88571 4.95982 4.96787 4.99045 5.04245 5.05125 5.14509 5.19446 5.35922 5.36985 5.42992 5.47317 5.59080 5.88844 6.08563 6.25453 6.31277 6.41588 6.81821 6.94972 7.03729 7.41569 8.92158 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.004629 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.875858 B = 6047.967257 C = 7029.849613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.267 1.267 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.047 3.953 10 H -0.013 1.013 11 C -0.103 4.103 12 C -0.121 4.121 13 C 0.102 3.898 14 N -0.596 5.596 15 C 0.526 3.474 16 O -0.572 6.572 17 C -0.142 4.142 18 C 0.556 3.444 19 O -0.546 6.546 20 N -0.693 5.693 21 C 0.062 3.938 22 C -0.202 4.202 23 C -0.157 4.157 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.110 4.110 27 C 0.129 3.871 28 H 0.261 0.739 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.406 0.594 36 H 0.135 0.865 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 -17.369 1.605 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.780 3.220 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.028 3.972 10 H 0.005 0.995 11 C -0.141 4.141 12 C -0.159 4.159 13 C -0.020 4.020 14 N -0.327 5.327 15 C 0.314 3.686 16 O -0.452 6.452 17 C -0.149 4.149 18 C 0.342 3.658 19 O -0.424 6.424 20 N -0.342 5.342 21 C -0.043 4.043 22 C -0.241 4.241 23 C -0.195 4.195 24 C -0.137 4.137 25 C -0.161 4.161 26 C -0.147 4.147 27 C 0.007 3.993 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.241 0.759 36 H 0.152 0.848 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.109 0.891 46 H 0.119 0.881 47 H 0.082 0.918 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.830 -17.408 1.445 17.883 hybrid contribution 0.645 1.881 0.504 2.052 sum -3.186 -15.527 1.949 15.970 Atomic orbital electron populations 1.70012 1.07109 1.27169 1.50782 1.25667 0.95628 1.02195 0.94524 0.85621 0.78873 0.79442 0.78115 1.20478 1.19137 1.20752 1.21407 0.93101 0.91680 1.51329 0.92756 1.18809 0.92934 0.91654 0.93794 0.99480 1.21422 0.98766 0.96343 0.97576 1.21818 0.97645 0.95367 1.01090 1.22096 0.90929 0.99722 0.89233 1.48286 1.41793 1.14691 1.27899 1.20373 0.83719 0.83894 0.80630 1.90649 1.36711 1.80775 1.37065 1.22469 0.92172 0.94459 1.05769 1.19476 0.88948 0.76362 0.81032 1.90665 1.52339 1.52532 1.46858 1.45360 1.09643 1.59557 1.19611 1.21717 0.83411 1.00112 0.99057 1.23409 1.03749 0.91625 1.05287 1.23473 1.04254 0.99479 0.92290 1.22853 1.02335 0.90252 0.98261 1.22810 1.02901 0.96367 0.93981 1.23003 1.03692 0.94115 0.93927 1.21659 0.94483 0.82298 1.00863 0.92981 0.91828 0.94304 0.94531 0.90278 0.88198 0.89719 0.75940 0.84766 0.90435 0.87308 0.85462 0.87637 0.88162 0.89881 0.89575 0.87992 0.89136 0.88062 0.91813 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.93 11.31 21.45 0.24 -51.69 16 2 C 0.02 1.05 5.30 84.66 0.45 1.50 16 3 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -29.40 8.56 25.60 0.22 -29.18 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.05 2.37 2.25 -11.46 -0.03 2.35 16 10 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 11 C -0.10 -4.76 4.96 30.62 0.15 -4.61 16 12 C -0.12 -4.59 6.08 30.67 0.19 -4.40 16 13 C 0.10 3.34 5.63 86.36 0.49 3.82 16 14 N -0.60 -21.99 2.97 -818.88 -2.43 -24.42 16 15 C 0.53 18.27 6.50 87.66 0.57 18.84 16 16 O -0.57 -23.05 15.58 -3.02 -0.05 -23.10 16 17 C -0.14 -3.81 0.56 -53.15 -0.03 -3.84 16 18 C 0.56 15.97 5.39 87.66 0.47 16.44 16 19 O -0.55 -17.33 14.58 -3.04 -0.04 -17.37 16 20 N -0.69 -18.83 5.46 -442.53 -2.42 -21.25 16 21 C 0.06 1.54 6.44 44.99 0.29 1.83 16 22 C -0.20 -5.07 10.46 30.62 0.32 -4.75 16 23 C -0.16 -2.91 10.46 30.62 0.32 -2.59 16 24 C -0.10 -2.11 6.89 31.12 0.21 -1.89 16 25 C -0.12 -2.15 7.80 31.12 0.24 -1.90 16 26 C -0.11 -2.37 5.68 31.12 0.18 -2.19 16 27 C 0.13 5.62 5.64 86.36 0.49 6.11 16 28 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.06 3.36 6.04 -2.39 -0.01 3.35 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.10 3.00 3.12 -2.39 -0.01 2.99 16 34 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.41 10.81 8.74 -92.71 -0.81 10.00 16 36 H 0.13 3.42 7.39 -2.39 -0.02 3.41 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.10 2.22 7.71 -2.39 -0.02 2.20 16 42 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 2.01 6.51 -2.39 -0.02 2.00 16 46 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 47 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 48 H 0.06 2.83 7.04 -2.39 -0.02 2.81 16 Total: -1.00 -65.62 375.85 2.01 -63.61 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.16 Total: 33.38 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 4.53 Total: -4.46 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -4.61 Total: -97.36 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -0.09 Total: -40.47 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -65.62 2.01 -63.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912832.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.723 kcal (2) G-P(sol) polarization free energy of solvation -65.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds