Wall clock time and date at job start Tue Mar 31 2020 12:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86806 * 119.99434 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99464 * 3 2 1 5 5 H 1.48497 * 109.47110 * 29.99866 * 3 2 1 6 6 H 1.48504 * 109.46974 * 149.99705 * 3 2 1 7 7 C 1.38646 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99982 * 359.97438 * 7 2 1 9 9 O 1.34839 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.35752 * 116.99404 * 185.05644 * 9 7 2 11 11 C 1.38873 * 120.07592 * 354.46429 * 10 9 7 12 12 C 1.38092 * 119.93314 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.07143 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.93268 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.47272 * 89.99941 * 14 13 12 16 16 C 1.46898 * 111.00020 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.46975 * 179.97438 * 16 15 14 18 18 H 1.08998 * 109.47093 * 304.99728 * 17 16 15 19 19 O 1.42904 * 109.47140 * 65.00097 * 17 16 15 20 20 C 1.53001 * 109.47017 * 184.99754 * 17 16 15 21 21 N 1.46901 * 109.46974 * 180.02562 * 20 17 16 22 22 C 1.48531 * 111.00160 * 52.60569 * 21 20 17 23 23 C 1.54940 * 103.22592 * 159.72040 * 22 21 20 24 24 C 1.54600 * 102.92187 * 322.58506 * 23 22 21 25 25 C 1.47905 * 110.99774 * 170.00318 * 21 20 17 26 26 C 1.38305 * 120.13540 * 0.25121 * 13 12 11 27 27 C 1.38105 * 120.06682 * 359.44832 * 26 13 12 28 28 H 0.96995 * 120.00562 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03512 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.96812 * 179.97438 * 12 11 10 31 31 H 1.08999 * 109.47213 * 329.99573 * 14 13 12 32 32 H 1.09004 * 109.47150 * 209.99749 * 14 13 12 33 33 H 1.00897 * 111.00072 * 303.95242 * 15 14 13 34 34 H 1.08998 * 109.46972 * 299.99404 * 16 15 14 35 35 H 1.09001 * 109.47173 * 60.00100 * 16 15 14 36 36 H 0.96699 * 114.00193 * 59.99842 * 19 17 16 37 37 H 1.08998 * 109.47168 * 299.99928 * 20 17 16 38 38 H 1.09000 * 109.47017 * 60.00237 * 20 17 16 39 39 H 1.08996 * 110.66460 * 278.15775 * 22 21 20 40 40 H 1.09001 * 110.66515 * 41.28826 * 22 21 20 41 41 H 1.09005 * 110.72202 * 204.22637 * 23 22 21 42 42 H 1.08997 * 110.72186 * 80.94725 * 23 22 21 43 43 H 1.09001 * 110.30953 * 263.04536 * 24 23 22 44 44 H 1.08996 * 110.30539 * 140.87712 * 24 23 22 45 45 H 1.08998 * 109.91482 * 333.50673 * 25 21 20 46 46 H 1.08996 * 109.91832 * 94.60588 * 25 21 20 47 47 H 1.07994 * 119.96661 * 179.70623 * 26 13 12 48 48 H 1.07996 * 120.03339 * 180.26834 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4468 2.6527 0.7000 6 1 3.5470 1.4404 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4690 -2.1360 0.0014 9 8 3.3573 -1.2005 0.0011 10 6 3.9736 -2.4054 -0.1050 11 6 3.2238 -3.5742 -0.0921 12 6 3.8538 -4.7983 -0.1997 13 6 5.2302 -4.8611 -0.3197 14 6 5.9146 -6.1987 -0.4364 15 7 6.0195 -6.5732 -1.8530 16 6 6.6836 -7.8746 -2.0056 17 6 6.7736 -8.2301 -3.4910 18 1 5.7782 -8.1955 -3.9338 19 8 7.6231 -7.2920 -4.1547 20 6 7.3513 -9.6385 -3.6443 21 7 7.4383 -9.9796 -5.0705 22 6 8.1673 -8.9286 -5.8257 23 6 8.6152 -9.6639 -7.1138 24 6 8.9732 -11.0769 -6.5986 25 6 8.2072 -11.2270 -5.2712 26 6 5.9803 -3.6992 -0.3272 27 6 5.3556 -2.4717 -0.2262 28 1 -0.4851 0.8400 -0.0004 29 1 2.1490 -3.5259 0.0020 30 1 3.2713 -5.7077 -0.1893 31 1 5.3339 -6.9516 0.0965 32 1 6.9126 -6.1353 -0.0025 33 1 5.1122 -6.5759 -2.2944 34 1 7.6869 -7.8223 -1.5828 35 1 6.1086 -8.6394 -1.4836 36 1 8.5269 -7.2685 -3.8117 37 1 8.3467 -9.6731 -3.2015 38 1 6.7034 -10.3541 -3.1381 39 1 7.5037 -8.0985 -6.0675 40 1 9.0321 -8.5795 -5.2615 41 1 9.4887 -9.1797 -7.5504 42 1 7.7988 -9.7114 -7.8344 43 1 10.0467 -11.1562 -6.4270 44 1 8.6463 -11.8336 -7.3118 45 1 8.9106 -11.3658 -4.4502 46 1 7.5276 -12.0774 -5.3255 47 1 7.0553 -3.7516 -0.4163 48 1 5.9415 -1.5645 -0.2364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863552521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:11 Heat of formation + Delta-G solvation = -42.314778 kcal Electronic energy + Delta-G solvation = -25925.613122 eV Core-core repulsion = 22174.121106 eV Total energy + Delta-G solvation = -3751.492016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.79339 -39.20896 -37.68061 -36.87463 -34.96751 -32.72896 -32.38215 -30.63892 -30.21761 -29.09964 -28.51553 -25.88261 -24.75557 -23.25409 -22.10890 -22.00378 -21.24130 -21.07123 -20.32637 -17.89522 -17.36286 -16.98763 -16.75310 -16.15484 -15.61148 -15.18071 -15.05366 -14.75573 -14.57781 -14.28966 -13.93270 -13.89249 -13.73912 -13.43721 -13.31088 -12.78773 -12.67324 -12.59675 -12.50357 -12.36185 -12.14831 -11.81320 -11.70297 -11.62442 -11.38540 -11.22687 -11.06573 -10.88676 -10.77748 -10.74596 -10.63561 -10.15191 -9.84793 -9.38036 -8.86615 -8.75634 -8.40324 -8.23452 -7.31394 -6.41149 -4.07832 2.14542 2.18730 3.22748 3.26765 3.41163 3.53324 4.00606 4.24435 4.24760 4.35164 4.39236 4.55988 4.62624 4.70680 4.83745 4.87375 4.92153 4.99181 5.08063 5.11619 5.20747 5.25371 5.29531 5.35307 5.37898 5.42628 5.46117 5.53083 5.67155 5.69440 5.74378 5.81680 5.82938 5.86243 5.99609 6.13716 6.35163 6.56607 6.58535 6.67241 6.79734 6.94167 7.08813 7.24853 7.28487 7.37546 7.49942 7.62517 7.80575 8.04456 8.94179 9.56666 10.66451 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.001877 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.947515 B =14911.689977 C =15195.628783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.222 4.222 12 C -0.067 4.067 13 C -0.176 4.176 14 C 0.117 3.883 15 N -0.675 5.675 16 C 0.029 3.971 17 C 0.112 3.888 18 H 0.105 0.895 19 O -0.542 6.542 20 C 0.016 3.984 21 N -0.516 5.516 22 C 0.047 3.953 23 C -0.133 4.133 24 C -0.132 4.132 25 C 0.034 3.966 26 C -0.053 4.053 27 C -0.194 4.194 28 H 0.279 0.721 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.344 0.656 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.367 0.633 37 H 0.037 0.963 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.113 0.887 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.938 -21.496 -8.059 29.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.109 3.891 11 C -0.241 4.241 12 C -0.086 4.086 13 C -0.178 4.178 14 C -0.011 4.011 15 N -0.307 5.307 16 C -0.102 4.102 17 C 0.052 3.948 18 H 0.123 0.877 19 O -0.346 6.346 20 C -0.114 4.114 21 N -0.240 5.240 22 C -0.080 4.080 23 C -0.171 4.171 24 C -0.170 4.170 25 C -0.094 4.094 26 C -0.072 4.072 27 C -0.213 4.213 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.123 0.877 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.163 0.837 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.214 0.786 37 H 0.055 0.945 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.131 0.869 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.306 -20.717 -8.640 28.343 hybrid contribution 0.656 -0.128 1.095 1.283 sum 17.962 -20.845 -7.545 28.532 Atomic orbital electron populations 1.69644 1.05561 1.28489 1.48061 1.24470 0.95034 0.98846 0.95672 0.86177 0.80304 0.81405 0.78990 1.19849 1.20804 1.18377 1.20765 0.76899 0.96619 1.52210 0.87650 1.83578 1.22611 1.25798 1.80265 1.19144 0.91736 0.85471 0.92714 1.21231 1.01061 0.91843 1.09936 1.20641 0.93498 0.96639 0.97839 1.19157 0.93328 0.93878 1.11393 1.20642 0.99193 0.93435 0.87826 1.60462 1.27326 1.28071 1.14808 1.22613 1.00117 0.91117 0.96324 1.21896 0.95433 0.85968 0.91479 0.87729 1.86754 1.24981 1.62370 1.60518 1.22970 1.00259 0.98304 0.89830 1.64788 1.47658 1.02941 1.08601 1.23393 0.97113 0.94711 0.92757 1.22625 1.01187 0.94998 0.98290 1.22392 0.99666 0.98169 0.96763 1.22898 0.95736 0.93945 0.96848 1.20457 0.98422 0.91102 0.97202 1.20225 0.91928 0.97927 1.11244 0.91058 0.85013 0.87663 0.95442 0.91235 0.83740 0.91031 0.94711 0.78597 0.94474 0.89891 0.88095 0.93929 0.91234 0.90907 0.91735 0.91164 0.94066 0.90527 0.86925 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.49 13.96 55.48 0.77 -24.72 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.82 28.62 -169.99 -4.86 16.95 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.39 -11.03 9.95 30.88 0.31 -10.73 16 8 H 0.11 3.04 5.44 -52.48 -0.29 2.76 16 9 O -0.22 -5.79 8.59 0.02 0.00 -5.79 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.22 -4.78 9.17 -39.40 -0.36 -5.14 16 12 C -0.07 -1.20 9.69 -39.61 -0.38 -1.59 16 13 C -0.18 -2.87 5.40 -104.57 -0.56 -3.44 16 14 C 0.12 1.48 5.81 -4.98 -0.03 1.45 16 15 N -0.68 -7.95 6.44 -115.06 -0.74 -8.69 16 16 C 0.03 0.25 5.32 -3.82 -0.02 0.23 16 17 C 0.11 0.95 3.23 -26.73 -0.09 0.86 16 18 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 19 O -0.54 -5.09 9.55 -35.23 -0.34 -5.43 16 20 C 0.02 0.12 4.88 -3.82 -0.02 0.10 16 21 N -0.52 -4.34 5.40 -230.45 -1.24 -5.58 16 22 C 0.05 0.39 4.65 -1.90 -0.01 0.38 16 23 C -0.13 -0.93 7.06 -24.87 -0.18 -1.11 16 24 C -0.13 -0.83 6.93 -25.37 -0.18 -1.00 16 25 C 0.03 0.24 6.70 -2.75 -0.02 0.22 16 26 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 27 C -0.19 -3.89 9.99 -39.39 -0.39 -4.28 16 28 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.13 2.99 5.64 -52.49 -0.30 2.70 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.34 4.25 8.72 -39.29 -0.34 3.91 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.37 2.50 8.34 45.56 0.38 2.88 16 37 H 0.04 0.25 7.81 -51.93 -0.41 -0.16 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.00 6.83 -51.93 -0.35 0.64 16 40 H 0.04 0.32 6.81 -51.93 -0.35 -0.03 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.04 0.27 7.57 -51.93 -0.39 -0.12 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 48 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -30.17 383.56 -10.40 -40.57 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.10 Total: 7.06 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -2.67 Total: -20.16 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -1.21 Total: -38.99 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.34 Total: -11.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.17 -10.40 -40.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863552521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.742 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds