Wall clock time and date at job start Tue Mar 31 2020 12:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86806 * 119.99434 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99464 * 3 2 1 5 5 H 1.48497 * 109.47110 * 29.99866 * 3 2 1 6 6 H 1.48504 * 109.46974 * 149.99705 * 3 2 1 7 7 C 1.38646 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99982 * 359.97438 * 7 2 1 9 9 O 1.34839 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.35752 * 116.99404 * 185.05644 * 9 7 2 11 11 C 1.38873 * 120.07592 * 354.46429 * 10 9 7 12 12 C 1.38092 * 119.93314 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.07143 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.93268 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.47272 * 89.99941 * 14 13 12 16 16 C 1.46898 * 111.00020 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.46975 * 179.97438 * 16 15 14 18 18 H 1.08998 * 109.47093 * 304.99728 * 17 16 15 19 19 O 1.42904 * 109.47140 * 65.00097 * 17 16 15 20 20 C 1.53001 * 109.47017 * 184.99754 * 17 16 15 21 21 N 1.46901 * 109.46974 * 180.02562 * 20 17 16 22 22 C 1.48531 * 111.00160 * 52.60569 * 21 20 17 23 23 C 1.54940 * 103.22592 * 159.72040 * 22 21 20 24 24 C 1.54600 * 102.92187 * 322.58506 * 23 22 21 25 25 C 1.47905 * 110.99774 * 170.00318 * 21 20 17 26 26 C 1.38305 * 120.13540 * 0.25121 * 13 12 11 27 27 C 1.38105 * 120.06682 * 359.44832 * 26 13 12 28 28 H 0.96995 * 120.00562 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03512 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.96812 * 179.97438 * 12 11 10 31 31 H 1.08999 * 109.47213 * 329.99573 * 14 13 12 32 32 H 1.09004 * 109.47150 * 209.99749 * 14 13 12 33 33 H 1.00897 * 111.00072 * 303.95242 * 15 14 13 34 34 H 1.08998 * 109.46972 * 299.99404 * 16 15 14 35 35 H 1.09001 * 109.47173 * 60.00100 * 16 15 14 36 36 H 0.96699 * 114.00193 * 59.99842 * 19 17 16 37 37 H 1.08998 * 109.47168 * 299.99928 * 20 17 16 38 38 H 1.09000 * 109.47017 * 60.00237 * 20 17 16 39 39 H 1.08996 * 110.66460 * 278.15775 * 22 21 20 40 40 H 1.09001 * 110.66515 * 41.28826 * 22 21 20 41 41 H 1.09005 * 110.72202 * 204.22637 * 23 22 21 42 42 H 1.08997 * 110.72186 * 80.94725 * 23 22 21 43 43 H 1.09001 * 110.30953 * 263.04536 * 24 23 22 44 44 H 1.08996 * 110.30539 * 140.87712 * 24 23 22 45 45 H 1.08998 * 109.91482 * 333.50673 * 25 21 20 46 46 H 1.08996 * 109.91832 * 94.60588 * 25 21 20 47 47 H 1.07994 * 119.96661 * 179.70623 * 26 13 12 48 48 H 1.07996 * 120.03339 * 180.26834 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4468 2.6527 0.7000 6 1 3.5470 1.4404 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4690 -2.1360 0.0014 9 8 3.3573 -1.2005 0.0011 10 6 3.9736 -2.4054 -0.1050 11 6 3.2238 -3.5742 -0.0921 12 6 3.8538 -4.7983 -0.1997 13 6 5.2302 -4.8611 -0.3197 14 6 5.9146 -6.1987 -0.4364 15 7 6.0195 -6.5732 -1.8530 16 6 6.6836 -7.8746 -2.0056 17 6 6.7736 -8.2301 -3.4910 18 1 5.7782 -8.1955 -3.9338 19 8 7.6231 -7.2920 -4.1547 20 6 7.3513 -9.6385 -3.6443 21 7 7.4383 -9.9796 -5.0705 22 6 8.1673 -8.9286 -5.8257 23 6 8.6152 -9.6639 -7.1138 24 6 8.9732 -11.0769 -6.5986 25 6 8.2072 -11.2270 -5.2712 26 6 5.9803 -3.6992 -0.3272 27 6 5.3556 -2.4717 -0.2262 28 1 -0.4851 0.8400 -0.0004 29 1 2.1490 -3.5259 0.0020 30 1 3.2713 -5.7077 -0.1893 31 1 5.3339 -6.9516 0.0965 32 1 6.9126 -6.1353 -0.0025 33 1 5.1122 -6.5759 -2.2944 34 1 7.6869 -7.8223 -1.5828 35 1 6.1086 -8.6394 -1.4836 36 1 8.5269 -7.2685 -3.8117 37 1 8.3467 -9.6731 -3.2015 38 1 6.7034 -10.3541 -3.1381 39 1 7.5037 -8.0985 -6.0675 40 1 9.0321 -8.5795 -5.2615 41 1 9.4887 -9.1797 -7.5504 42 1 7.7988 -9.7114 -7.8344 43 1 10.0467 -11.1562 -6.4270 44 1 8.6463 -11.8336 -7.3118 45 1 8.9106 -11.3658 -4.4502 46 1 7.5276 -12.0774 -5.3255 47 1 7.0553 -3.7516 -0.4163 48 1 5.9415 -1.5645 -0.2364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863552521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:10 Heat of formation + Delta-G solvation = -64.803640 kcal Electronic energy + Delta-G solvation = -25926.588313 eV Core-core repulsion = 22174.121106 eV Total energy + Delta-G solvation = -3752.467206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90707 -40.37990 -38.84616 -37.98332 -35.99322 -34.44735 -33.32843 -31.89089 -31.70372 -29.65837 -29.50842 -27.52512 -26.00154 -24.25816 -23.64181 -22.73828 -21.97459 -21.72254 -21.56443 -19.82078 -19.11479 -17.81681 -17.38385 -16.91143 -16.60077 -16.37660 -16.17336 -15.91207 -15.75553 -15.54387 -15.39544 -15.22247 -14.85064 -14.48313 -14.34407 -14.16419 -13.98815 -13.97260 -13.38931 -13.32888 -13.10723 -13.01107 -12.71705 -12.46858 -12.41252 -12.34526 -12.16911 -12.13364 -11.94532 -11.84162 -11.68248 -11.39642 -11.27250 -10.90605 -10.52452 -9.79412 -9.33936 -9.30102 -8.95971 -8.50186 -6.22804 0.58234 0.63064 1.31025 1.35410 1.51725 2.27977 2.70889 2.91619 3.06601 3.16960 3.40482 3.65085 3.80368 3.84464 3.96173 4.04664 4.06524 4.16231 4.19313 4.20834 4.29028 4.43025 4.45224 4.53515 4.60054 4.67109 4.71362 4.75094 4.76484 4.82983 4.84613 4.96686 5.01006 5.02087 5.13953 5.18419 5.27157 5.32643 5.36503 5.37706 5.58422 5.76521 5.81474 5.91421 6.00051 6.06194 6.16421 6.27208 6.42170 6.84175 6.92274 7.58931 8.61389 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.001877 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.947515 B =14911.689977 C =15195.628783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.246 6.246 10 C 0.119 3.881 11 C -0.239 4.239 12 C -0.068 4.068 13 C -0.149 4.149 14 C 0.121 3.879 15 N -0.687 5.687 16 C 0.035 3.965 17 C 0.119 3.881 18 H 0.085 0.915 19 O -0.558 6.558 20 C 0.022 3.978 21 N -0.535 5.535 22 C 0.051 3.949 23 C -0.134 4.134 24 C -0.129 4.129 25 C 0.032 3.968 26 C -0.049 4.049 27 C -0.194 4.194 28 H 0.285 0.715 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.339 0.661 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.378 0.622 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.150 0.850 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.380 -23.453 -8.093 32.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.258 4.258 12 C -0.087 4.087 13 C -0.150 4.150 14 C -0.007 4.007 15 N -0.318 5.318 16 C -0.095 4.095 17 C 0.060 3.940 18 H 0.103 0.897 19 O -0.364 6.364 20 C -0.107 4.107 21 N -0.259 5.259 22 C -0.076 4.076 23 C -0.172 4.172 24 C -0.167 4.167 25 C -0.095 4.095 26 C -0.067 4.067 27 C -0.213 4.213 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.150 0.850 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.157 0.843 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.227 0.773 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.168 0.832 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 20.786 -22.722 -8.675 31.994 hybrid contribution -0.220 0.131 1.050 1.081 sum 20.566 -22.592 -7.625 31.488 Atomic orbital electron populations 1.69728 1.06867 1.29582 1.50222 1.25290 0.95911 1.02179 0.95562 0.85209 0.78778 0.77401 0.79261 1.19134 1.19109 1.18747 1.20703 0.78134 0.96094 1.52613 0.90215 1.83519 1.21215 1.27526 1.83148 1.19697 0.93247 0.85085 0.94991 1.21253 1.00094 0.93291 1.11139 1.20936 0.94735 0.96045 0.96935 1.19688 0.92627 0.95889 1.06825 1.20648 0.99962 0.91213 0.88853 1.60423 1.27215 1.30256 1.13887 1.22617 1.00570 0.89819 0.96448 1.21759 0.94576 0.86570 0.91142 0.89729 1.86741 1.25891 1.62704 1.61088 1.22902 1.00893 0.97455 0.89466 1.64755 1.48395 1.03500 1.09279 1.23272 0.96754 0.94180 0.93377 1.22629 1.01237 0.95645 0.97715 1.22394 1.00237 0.97606 0.96469 1.22934 0.95846 0.93263 0.97499 1.20914 1.00320 0.90005 0.95468 1.20545 0.90549 0.99875 1.10380 0.90583 0.87569 0.84955 0.93969 0.89284 0.84349 0.89623 0.93531 0.77315 0.93220 0.89432 0.90330 0.93215 0.90323 0.91840 0.90670 0.90717 0.93268 0.90575 0.83213 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.84 13.96 21.61 0.30 -55.54 16 2 C 0.01 0.52 5.49 84.83 0.47 0.99 16 3 Si 0.97 46.19 28.62 68.60 1.96 48.15 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.40 -23.96 9.95 67.92 0.68 -23.29 16 8 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16 9 O -0.25 -13.69 8.59 -22.86 -0.20 -13.89 16 10 C 0.12 5.68 6.65 22.58 0.15 5.83 16 11 C -0.24 -10.63 9.17 22.39 0.21 -10.43 16 12 C -0.07 -2.33 9.69 22.25 0.22 -2.12 16 13 C -0.15 -4.38 5.40 -19.83 -0.11 -4.48 16 14 C 0.12 2.51 5.81 85.56 0.50 3.01 16 15 N -0.69 -13.67 6.44 -517.93 -3.33 -17.00 16 16 C 0.04 0.48 5.32 86.30 0.46 0.94 16 17 C 0.12 1.75 3.23 30.60 0.10 1.85 16 18 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 19 O -0.56 -9.35 9.55 -148.98 -1.42 -10.77 16 20 C 0.02 0.27 4.88 86.30 0.42 0.69 16 21 N -0.53 -8.07 5.40 -883.02 -4.76 -12.83 16 22 C 0.05 0.77 4.65 86.65 0.40 1.17 16 23 C -0.13 -1.71 7.06 31.80 0.22 -1.48 16 24 C -0.13 -1.35 6.93 31.47 0.22 -1.14 16 25 C 0.03 0.39 6.70 86.45 0.58 0.97 16 26 C -0.05 -1.51 9.69 22.25 0.22 -1.30 16 27 C -0.19 -7.58 9.99 22.39 0.22 -7.36 16 28 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.11 5.22 5.64 -2.91 -0.02 5.21 16 30 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.04 0.79 8.08 -2.39 -0.02 0.78 16 32 H 0.09 1.59 8.08 -2.38 -0.02 1.57 16 33 H 0.34 7.45 8.72 -89.70 -0.78 6.67 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.38 4.14 8.34 -74.06 -0.62 3.53 16 37 H 0.05 0.49 7.81 -2.39 -0.02 0.47 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.52 6.83 -2.39 -0.02 1.51 16 40 H 0.05 0.65 6.81 -2.39 -0.02 0.63 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 0.51 7.57 -2.39 -0.02 0.49 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 47 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 48 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -68.75 383.56 -2.94 -71.69 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.44 Total: 26.34 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 4.95 Total: -36.15 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -7.80 Total: -85.37 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -1.62 Total: -24.66 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.96 Total: 48.15 kcal Total: -68.75 -2.94 -71.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863552521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.889 kcal (2) G-P(sol) polarization free energy of solvation -68.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds