Wall clock time and date at job start Tue Mar 31 2020 12:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48497 * 109.47426 * 274.63252 * 3 2 1 5 5 H 1.48498 * 109.47278 * 34.63251 * 3 2 1 6 6 H 1.48503 * 109.47346 * 154.63281 * 3 2 1 7 7 C 1.38811 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00027 * 196.71804 * 7 2 1 9 9 N 1.36944 * 119.99924 * 16.70957 * 7 2 1 10 10 C 1.47159 * 121.07167 * 205.67315 * 9 7 2 11 11 C 1.53283 * 108.55530 * 231.24736 * 10 9 7 12 12 O 1.43122 * 109.23109 * 307.01085 * 11 10 9 13 13 C 1.41874 * 114.37062 * 60.90148 * 12 11 10 14 14 C 1.54368 * 110.72397 * 63.29261 * 13 12 11 15 15 C 1.54456 * 102.86508 * 83.68646 * 14 13 12 16 16 N 1.47083 * 107.29832 * 21.50590 * 15 14 13 17 17 C 1.34775 * 125.62893 * 180.98015 * 16 15 14 18 18 O 1.21288 * 120.00013 * 180.02562 * 17 16 15 19 19 C 1.50693 * 120.00328 * 0.02562 * 17 16 15 20 20 H 1.09003 * 115.55700 * 325.73906 * 19 17 16 21 21 C 1.53123 * 117.51369 * 111.53710 * 19 17 16 22 22 C 1.52461 * 117.51647 * 180.02562 * 19 17 16 23 23 C 1.53258 * 128.58470 * 134.95307 * 22 19 17 24 24 C 1.53892 * 86.88020 * 194.88616 * 23 22 19 25 25 C 1.53254 * 128.58516 * 10.14904 * 22 19 17 26 26 C 1.47573 * 108.74246 * 0.98200 * 16 15 14 27 27 C 1.47326 * 121.06893 * 25.70067 * 9 7 2 28 28 H 0.97000 * 119.99769 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.62588 * 111.53010 * 10 9 7 30 30 H 1.09004 * 109.62904 * 350.97049 * 10 9 7 31 31 H 1.08995 * 109.51463 * 187.07681 * 11 10 9 32 32 H 1.09008 * 109.54491 * 66.95662 * 11 10 9 33 33 H 1.09002 * 110.73474 * 325.34110 * 14 13 12 34 34 H 1.09011 * 110.73398 * 202.03349 * 14 13 12 35 35 H 1.09000 * 109.87768 * 140.92975 * 15 14 13 36 36 H 1.08994 * 109.87842 * 262.08011 * 15 14 13 37 37 H 1.09001 * 117.51306 * 214.90247 * 21 19 17 38 38 H 1.09001 * 117.51465 * 0.02562 * 21 19 17 39 39 H 1.09002 * 113.64676 * 309.38099 * 23 22 19 40 40 H 1.08996 * 113.64672 * 80.39039 * 23 22 19 41 41 H 1.08996 * 113.59058 * 270.39084 * 24 23 22 42 42 H 1.09000 * 113.65887 * 139.58306 * 24 23 22 43 43 H 1.08997 * 113.64581 * 279.61155 * 25 22 19 44 44 H 1.09002 * 113.64312 * 50.52502 * 25 22 19 45 45 H 1.09002 * 110.37773 * 217.86961 * 26 16 15 46 46 H 1.08995 * 110.37998 * 95.51726 * 26 16 15 47 47 H 1.09001 * 109.68055 * 11.06849 * 27 9 7 48 48 H 1.09004 * 109.67581 * 250.51729 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3998 2.1030 -1.3954 5 1 1.5000 2.6224 0.7957 6 1 3.5933 1.4139 0.5998 7 6 2.0103 -1.2021 -0.0005 8 1 3.0561 -1.2220 0.2685 9 7 1.3690 -2.3629 -0.3421 10 6 1.8404 -3.6655 0.1546 11 6 1.9942 -4.6157 -1.0383 12 8 0.7719 -4.6400 -1.7824 13 6 0.3874 -3.3837 -2.3179 14 6 1.4291 -2.8846 -3.3421 15 6 1.0066 -3.6052 -4.6413 16 7 -0.4060 -3.9862 -4.4905 17 6 -1.1410 -4.6528 -5.4026 18 8 -2.3025 -4.9147 -5.1713 19 6 -0.5199 -5.0727 -6.7098 20 1 0.2255 -4.3896 -7.1171 21 6 -0.3102 -6.5713 -6.9441 22 6 -1.4030 -5.8232 -7.7004 23 6 -1.5429 -5.6062 -9.2110 24 6 -2.8191 -6.4626 -9.1308 25 6 -2.9191 -6.0422 -7.6539 26 6 -0.8857 -3.5180 -3.1758 27 6 0.1852 -2.3479 -1.2190 28 1 -0.4850 0.8401 0.0004 29 1 1.1138 -4.0743 0.8568 30 1 2.8031 -3.5417 0.6505 31 1 2.2210 -5.6190 -0.6778 32 1 2.8040 -4.2676 -1.6797 33 1 2.4350 -3.1819 -3.0455 34 1 1.3648 -1.8031 -3.4621 35 1 1.1204 -2.9330 -5.4917 36 1 1.6173 -4.4963 -4.7863 37 1 0.5736 -6.8743 -7.5056 38 1 -0.6219 -7.2532 -6.1530 39 1 -1.7294 -4.5687 -9.4883 40 1 -0.7446 -6.0650 -9.7944 41 1 -2.6386 -7.5285 -9.2696 42 1 -3.6365 -6.0883 -9.7472 43 1 -3.2239 -6.8503 -6.9890 44 1 -3.4885 -5.1261 -7.4961 45 1 -1.5638 -4.2497 -2.7366 46 1 -1.3806 -2.5519 -3.2744 47 1 0.0700 -1.3592 -1.6632 48 1 -0.7040 -2.5964 -0.6395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972579123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:43 Heat of formation + Delta-G solvation = 6.449348 kcal Electronic energy + Delta-G solvation = -28250.102521 eV Core-core repulsion = 24500.725076 eV Total energy + Delta-G solvation = -3749.377445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.51848 -39.59075 -38.06451 -36.01678 -34.47894 -33.76240 -31.48647 -31.23208 -29.52449 -27.56978 -26.11871 -25.78212 -24.00385 -23.32834 -23.18422 -22.33881 -21.24559 -19.28555 -18.84538 -18.13599 -17.17112 -17.06236 -16.12813 -15.55021 -15.36657 -15.28675 -14.94900 -14.83052 -14.40800 -14.23478 -13.62774 -13.48497 -13.32875 -12.92050 -12.74334 -12.55422 -12.48522 -12.23952 -12.11348 -12.00735 -11.67946 -11.57605 -11.35106 -11.09591 -10.93318 -10.88233 -10.73405 -10.47096 -10.31758 -10.29162 -10.20244 -9.98757 -9.86733 -9.58161 -9.53548 -9.06203 -8.57813 -8.38535 -6.79487 -5.88445 -3.31313 2.63386 3.08754 3.30747 3.38348 3.39922 3.67430 4.14991 4.24498 4.39152 4.48116 4.62375 4.65685 4.74962 4.85127 4.92946 5.11928 5.21455 5.25815 5.33912 5.41291 5.44837 5.50961 5.56249 5.58971 5.66925 5.72257 5.72646 5.80169 5.83482 5.85208 5.98949 6.03912 6.06576 6.15665 6.17719 6.27867 6.28293 6.31679 6.45369 6.50951 6.63558 6.76307 7.02974 7.40703 7.67398 7.74378 7.91452 8.27723 8.37183 9.06388 9.69450 10.26897 11.19882 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.003092 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.017046 B = 9054.214788 C = 9501.785609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.109 3.891 11 C 0.046 3.954 12 O -0.374 6.374 13 C 0.086 3.914 14 C -0.144 4.144 15 C 0.106 3.894 16 N -0.608 5.608 17 C 0.557 3.443 18 O -0.542 6.542 19 C -0.172 4.172 20 H 0.120 0.880 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.098 4.098 24 C -0.142 4.142 25 C -0.082 4.082 26 C 0.125 3.875 27 C 0.163 3.837 28 H 0.256 0.744 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.114 -10.877 -15.680 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.317 5.317 10 C -0.017 4.017 11 C -0.032 4.032 12 O -0.293 6.293 13 C 0.044 3.956 14 C -0.182 4.182 15 C -0.017 4.017 16 N -0.342 5.342 17 C 0.346 3.654 18 O -0.419 6.419 19 C -0.193 4.193 20 H 0.138 0.862 21 C -0.158 4.158 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.179 4.179 25 C -0.119 4.119 26 C 0.002 3.998 27 C 0.037 3.963 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.116 0.884 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.244 -11.054 -15.604 19.124 hybrid contribution 0.876 1.257 0.247 1.552 sum 1.120 -9.797 -15.356 18.250 Atomic orbital electron populations 1.70017 1.05206 1.25692 1.53773 1.25034 0.95339 0.98412 1.00837 0.86251 0.79128 0.83630 0.77643 1.21408 1.21699 1.20385 1.19187 0.92550 0.84355 1.42067 0.91296 1.44076 1.32697 1.01206 1.53678 1.21593 0.98622 0.87588 0.93931 1.23094 0.86406 0.99706 0.93958 1.87654 1.41384 1.29939 1.70299 1.22691 0.92501 0.86425 0.94019 1.23033 1.00767 1.01182 0.93246 1.22071 0.81758 0.98882 0.98992 1.48479 1.12263 1.55902 1.17515 1.19206 0.85492 0.77093 0.83609 1.90676 1.16648 1.55870 1.78733 1.22111 1.04471 0.96964 0.95795 0.86225 1.22778 0.99269 0.91921 1.01837 1.22298 0.94417 1.02554 0.93601 1.22501 0.98103 1.00528 0.92436 1.22812 0.97700 0.99820 0.97614 1.22316 0.92410 1.01929 0.95277 1.22092 0.96101 1.00373 0.81209 1.21139 0.89369 0.96786 0.89020 0.93437 0.95547 0.91908 0.90009 0.93496 0.89573 0.89461 0.91893 0.91727 0.87760 0.88062 0.89655 0.91344 0.90239 0.91332 0.91295 0.89410 0.89867 0.89774 0.88422 0.95219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.21 11.12 55.49 0.62 -24.59 16 2 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16 3 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.25 -6.57 9.66 -15.06 -0.15 -6.71 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.19 2.98 -172.25 -0.51 -14.70 16 10 C 0.11 2.21 6.71 -3.54 -0.02 2.19 16 11 C 0.05 0.80 6.78 37.30 0.25 1.05 16 12 O -0.37 -7.18 10.28 -35.22 -0.36 -7.55 16 13 C 0.09 1.62 0.84 -89.65 -0.08 1.54 16 14 C -0.14 -2.38 5.87 -25.25 -0.15 -2.52 16 15 C 0.11 1.47 6.29 -2.96 -0.02 1.45 16 16 N -0.61 -9.78 3.33 -170.77 -0.57 -10.35 16 17 C 0.56 8.95 7.63 -10.99 -0.08 8.87 16 18 O -0.54 -10.29 15.41 5.55 0.09 -10.20 16 19 C -0.17 -2.10 5.54 -91.99 -0.51 -2.61 16 20 H 0.12 1.26 7.73 -51.93 -0.40 0.85 16 21 C -0.12 -1.26 10.24 -26.92 -0.28 -1.53 16 22 C -0.13 -1.41 2.88 -154.77 -0.45 -1.85 16 23 C -0.10 -0.85 8.10 -26.13 -0.21 -1.06 16 24 C -0.14 -1.22 8.08 -25.81 -0.21 -1.43 16 25 C -0.08 -0.94 6.47 -26.14 -0.17 -1.11 16 26 C 0.12 2.24 6.08 -2.87 -0.02 2.23 16 27 C 0.16 3.74 4.07 -3.91 -0.02 3.72 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.78 6.23 -51.92 -0.32 0.46 16 33 H 0.09 1.41 6.08 -51.93 -0.32 1.09 16 34 H 0.09 1.51 7.83 -51.92 -0.41 1.11 16 35 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 45 H 0.08 1.60 8.06 -51.93 -0.42 1.18 16 46 H 0.08 1.50 7.99 -51.93 -0.42 1.09 16 47 H 0.10 2.44 5.94 -51.93 -0.31 2.13 16 48 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -30.35 373.90 -10.35 -40.71 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.04 Total: 3.03 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.18 Total: 2.20 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.47 Total: -49.65 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.28 Total: -17.75 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.35 -10.35 -40.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972579123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.156 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds