Wall clock time and date at job start Tue Mar 31 2020 12:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48497 * 109.47426 * 274.63252 * 3 2 1 5 5 H 1.48498 * 109.47278 * 34.63251 * 3 2 1 6 6 H 1.48503 * 109.47346 * 154.63281 * 3 2 1 7 7 C 1.38811 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00027 * 196.71804 * 7 2 1 9 9 N 1.36944 * 119.99924 * 16.70957 * 7 2 1 10 10 C 1.47159 * 121.07167 * 205.67315 * 9 7 2 11 11 C 1.53283 * 108.55530 * 231.24736 * 10 9 7 12 12 O 1.43122 * 109.23109 * 307.01085 * 11 10 9 13 13 C 1.41874 * 114.37062 * 60.90148 * 12 11 10 14 14 C 1.54368 * 110.72397 * 63.29261 * 13 12 11 15 15 C 1.54456 * 102.86508 * 83.68646 * 14 13 12 16 16 N 1.47083 * 107.29832 * 21.50590 * 15 14 13 17 17 C 1.34775 * 125.62893 * 180.98015 * 16 15 14 18 18 O 1.21288 * 120.00013 * 180.02562 * 17 16 15 19 19 C 1.50693 * 120.00328 * 0.02562 * 17 16 15 20 20 H 1.09003 * 115.55700 * 325.73906 * 19 17 16 21 21 C 1.53123 * 117.51369 * 111.53710 * 19 17 16 22 22 C 1.52461 * 117.51647 * 180.02562 * 19 17 16 23 23 C 1.53258 * 128.58470 * 134.95307 * 22 19 17 24 24 C 1.53892 * 86.88020 * 194.88616 * 23 22 19 25 25 C 1.53254 * 128.58516 * 10.14904 * 22 19 17 26 26 C 1.47573 * 108.74246 * 0.98200 * 16 15 14 27 27 C 1.47326 * 121.06893 * 25.70067 * 9 7 2 28 28 H 0.97000 * 119.99769 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.62588 * 111.53010 * 10 9 7 30 30 H 1.09004 * 109.62904 * 350.97049 * 10 9 7 31 31 H 1.08995 * 109.51463 * 187.07681 * 11 10 9 32 32 H 1.09008 * 109.54491 * 66.95662 * 11 10 9 33 33 H 1.09002 * 110.73474 * 325.34110 * 14 13 12 34 34 H 1.09011 * 110.73398 * 202.03349 * 14 13 12 35 35 H 1.09000 * 109.87768 * 140.92975 * 15 14 13 36 36 H 1.08994 * 109.87842 * 262.08011 * 15 14 13 37 37 H 1.09001 * 117.51306 * 214.90247 * 21 19 17 38 38 H 1.09001 * 117.51465 * 0.02562 * 21 19 17 39 39 H 1.09002 * 113.64676 * 309.38099 * 23 22 19 40 40 H 1.08996 * 113.64672 * 80.39039 * 23 22 19 41 41 H 1.08996 * 113.59058 * 270.39084 * 24 23 22 42 42 H 1.09000 * 113.65887 * 139.58306 * 24 23 22 43 43 H 1.08997 * 113.64581 * 279.61155 * 25 22 19 44 44 H 1.09002 * 113.64312 * 50.52502 * 25 22 19 45 45 H 1.09002 * 110.37773 * 217.86961 * 26 16 15 46 46 H 1.08995 * 110.37998 * 95.51726 * 26 16 15 47 47 H 1.09001 * 109.68055 * 11.06849 * 27 9 7 48 48 H 1.09004 * 109.67581 * 250.51729 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3998 2.1030 -1.3954 5 1 1.5000 2.6224 0.7957 6 1 3.5933 1.4139 0.5998 7 6 2.0103 -1.2021 -0.0005 8 1 3.0561 -1.2220 0.2685 9 7 1.3690 -2.3629 -0.3421 10 6 1.8404 -3.6655 0.1546 11 6 1.9942 -4.6157 -1.0383 12 8 0.7719 -4.6400 -1.7824 13 6 0.3874 -3.3837 -2.3179 14 6 1.4291 -2.8846 -3.3421 15 6 1.0066 -3.6052 -4.6413 16 7 -0.4060 -3.9862 -4.4905 17 6 -1.1410 -4.6528 -5.4026 18 8 -2.3025 -4.9147 -5.1713 19 6 -0.5199 -5.0727 -6.7098 20 1 0.2255 -4.3896 -7.1171 21 6 -0.3102 -6.5713 -6.9441 22 6 -1.4030 -5.8232 -7.7004 23 6 -1.5429 -5.6062 -9.2110 24 6 -2.8191 -6.4626 -9.1308 25 6 -2.9191 -6.0422 -7.6539 26 6 -0.8857 -3.5180 -3.1758 27 6 0.1852 -2.3479 -1.2190 28 1 -0.4850 0.8401 0.0004 29 1 1.1138 -4.0743 0.8568 30 1 2.8031 -3.5417 0.6505 31 1 2.2210 -5.6190 -0.6778 32 1 2.8040 -4.2676 -1.6797 33 1 2.4350 -3.1819 -3.0455 34 1 1.3648 -1.8031 -3.4621 35 1 1.1204 -2.9330 -5.4917 36 1 1.6173 -4.4963 -4.7863 37 1 0.5736 -6.8743 -7.5056 38 1 -0.6219 -7.2532 -6.1530 39 1 -1.7294 -4.5687 -9.4883 40 1 -0.7446 -6.0650 -9.7944 41 1 -2.6386 -7.5285 -9.2696 42 1 -3.6365 -6.0883 -9.7472 43 1 -3.2239 -6.8503 -6.9890 44 1 -3.4885 -5.1261 -7.4961 45 1 -1.5638 -4.2497 -2.7366 46 1 -1.3806 -2.5519 -3.2744 47 1 0.0700 -1.3592 -1.6632 48 1 -0.7040 -2.5964 -0.6395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972579123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:42 Heat of formation + Delta-G solvation = -11.081121 kcal Electronic energy + Delta-G solvation = -28250.862699 eV Core-core repulsion = 24500.725076 eV Total energy + Delta-G solvation = -3750.137623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74401 -40.80826 -39.25656 -37.44211 -36.26776 -34.64113 -33.26363 -32.82357 -30.89231 -29.19558 -27.78060 -26.55911 -25.48764 -24.80605 -23.94827 -23.57787 -22.83789 -20.62104 -20.13332 -19.09724 -18.92090 -18.35333 -17.61930 -16.92407 -16.64816 -16.29835 -16.15176 -16.06777 -15.92535 -15.76257 -15.19475 -15.09870 -14.59818 -14.49418 -14.28676 -13.77942 -13.63854 -13.48974 -13.19506 -13.10018 -12.94884 -12.83321 -12.65546 -12.50638 -12.42443 -12.31847 -12.22024 -12.11929 -11.90017 -11.83443 -11.28427 -11.16853 -11.01714 -10.85750 -10.78029 -10.59939 -10.46919 -9.68537 -8.74491 -7.89757 -5.36226 1.46732 1.47573 1.48853 1.57944 1.86814 2.48050 2.71471 2.78327 3.22779 3.28131 3.43673 3.58576 3.69179 3.74375 3.84262 3.91221 3.97727 3.98286 4.10508 4.22038 4.29070 4.36468 4.47226 4.52401 4.56061 4.60984 4.66208 4.69671 4.75312 4.80362 4.86722 4.90791 4.91243 4.98744 5.03515 5.06135 5.11140 5.11521 5.17603 5.23585 5.26039 5.40886 5.49336 5.53193 5.61887 6.28674 6.39729 6.51563 7.05820 7.12525 7.74692 8.29694 9.16669 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.003092 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.017046 B = 9054.214788 C = 9501.785609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.256 4.256 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.103 3.897 11 C 0.053 3.947 12 O -0.383 6.383 13 C 0.094 3.906 14 C -0.137 4.137 15 C 0.113 3.887 16 N -0.610 5.610 17 C 0.549 3.451 18 O -0.583 6.583 19 C -0.181 4.181 20 H 0.145 0.855 21 C -0.105 4.105 22 C -0.136 4.136 23 C -0.086 4.086 24 C -0.131 4.131 25 C -0.098 4.098 26 C 0.128 3.872 27 C 0.175 3.825 28 H 0.250 0.750 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.072 0.928 48 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 -12.010 -18.388 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.209 1.209 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.386 4.386 8 H 0.094 0.906 9 N -0.333 5.333 10 C -0.023 4.023 11 C -0.024 4.024 12 O -0.303 6.303 13 C 0.052 3.948 14 C -0.175 4.175 15 C -0.009 4.009 16 N -0.343 5.343 17 C 0.340 3.660 18 O -0.463 6.463 19 C -0.201 4.201 20 H 0.163 0.837 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.168 4.168 25 C -0.135 4.135 26 C 0.004 3.996 27 C 0.049 3.951 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.157 0.843 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 3.221 -12.215 -18.322 22.255 hybrid contribution -0.100 1.558 1.229 1.987 sum 3.121 -10.657 -17.093 20.383 Atomic orbital electron populations 1.70191 1.06762 1.25912 1.55555 1.25794 0.95985 1.01524 1.01266 0.85236 0.78177 0.79461 0.77491 1.20942 1.22752 1.19043 1.19537 0.92937 0.85207 1.40927 0.90599 1.44338 1.32556 1.02165 1.54213 1.21799 0.98585 0.86588 0.95312 1.23178 0.85990 1.00702 0.92551 1.87654 1.42517 1.29584 1.70509 1.22360 0.93962 0.85330 0.93127 1.22929 1.00164 1.00687 0.93703 1.22178 0.80336 1.00138 0.98260 1.48563 1.13314 1.55898 1.16482 1.20035 0.85109 0.76179 0.84685 1.90658 1.18592 1.57337 1.79728 1.22138 1.05606 0.98645 0.93758 0.83700 1.22887 1.00057 0.90095 1.01212 1.22539 0.93728 1.02344 0.95073 1.22489 0.98456 1.00873 0.90521 1.22791 0.98313 1.00679 0.95011 1.22333 0.93291 1.00448 0.97440 1.21842 0.95531 0.99447 0.82750 1.20848 0.87889 0.96793 0.89598 0.94086 0.97075 0.90552 0.86579 0.91889 0.88766 0.90722 0.89001 0.89395 0.84322 0.89607 0.89377 0.89026 0.89033 0.90395 0.93221 0.91640 0.91941 0.90668 0.90986 0.99296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.51 11.12 21.65 0.24 -54.27 16 2 C -0.05 -2.72 4.96 84.86 0.42 -2.30 16 3 Si 0.97 43.24 29.59 68.60 2.03 45.27 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.26 -13.40 9.66 84.03 0.81 -12.59 16 8 H 0.08 3.80 7.88 -2.91 -0.02 3.78 16 9 N -0.61 -29.56 2.98 -698.86 -2.08 -31.64 16 10 C 0.10 4.10 6.71 86.35 0.58 4.68 16 11 C 0.05 1.71 6.78 72.08 0.49 2.20 16 12 O -0.38 -14.42 10.28 -148.95 -1.53 -15.95 16 13 C 0.09 3.59 0.84 -10.16 -0.01 3.58 16 14 C -0.14 -4.31 5.87 31.55 0.19 -4.12 16 15 C 0.11 2.81 6.29 86.76 0.55 3.35 16 16 N -0.61 -19.20 3.33 -812.59 -2.71 -21.90 16 17 C 0.55 17.40 7.63 87.66 0.67 18.07 16 18 O -0.58 -22.97 15.41 -3.05 -0.05 -23.02 16 19 C -0.18 -3.94 5.54 -11.68 -0.06 -4.01 16 20 H 0.15 2.42 7.73 -2.39 -0.02 2.40 16 21 C -0.11 -1.87 10.24 30.47 0.31 -1.56 16 22 C -0.14 -2.70 2.88 -52.35 -0.15 -2.85 16 23 C -0.09 -1.20 8.10 30.98 0.25 -0.95 16 24 C -0.13 -1.97 8.08 31.19 0.25 -1.71 16 25 C -0.10 -2.24 6.47 30.98 0.20 -2.04 16 26 C 0.13 4.79 6.08 86.55 0.53 5.32 16 27 C 0.18 8.42 4.07 86.01 0.35 8.77 16 28 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 2.81 7.96 -2.38 -0.02 2.79 16 31 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.06 1.87 6.23 -2.38 -0.01 1.86 16 33 H 0.09 2.82 6.08 -2.39 -0.01 2.80 16 34 H 0.07 2.54 7.83 -2.38 -0.02 2.53 16 35 H 0.09 1.82 8.06 -2.39 -0.02 1.80 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.76 8.05 -2.39 -0.02 1.74 16 45 H 0.06 2.56 8.06 -2.39 -0.02 2.54 16 46 H 0.08 2.89 7.99 -2.39 -0.02 2.88 16 47 H 0.07 3.81 5.94 -2.39 -0.01 3.80 16 48 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 Total: -1.00 -69.35 373.90 2.21 -67.14 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.94 Total: 20.53 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.37 Total: 13.84 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -4.55 Total: -107.81 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.58 Total: -38.98 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -69.35 2.21 -67.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972579123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.061 kcal (2) G-P(sol) polarization free energy of solvation -69.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds