Wall clock time and date at job start Tue Mar 31 2020 12:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99827 * 2 1 4 4 H 1.48506 * 109.46742 * 239.99507 * 3 2 1 5 5 H 1.48494 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47038 * 119.99904 * 3 2 1 7 7 C 1.38815 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99465 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00290 * 0.02562 * 7 2 1 10 10 C 1.47172 * 125.64894 * 359.97298 * 9 7 2 11 11 C 1.55352 * 106.96345 * 180.99682 * 10 9 7 12 12 H 1.08998 * 112.36841 * 215.22486 * 11 10 9 13 13 C 1.53001 * 106.41415 * 91.60634 * 11 10 9 14 14 C 1.52596 * 111.04945 * 197.20698 * 13 11 10 15 15 C 1.53321 * 108.40947 * 62.35327 * 14 13 11 16 16 H 1.09008 * 109.73795 * 55.52568 * 15 14 13 17 17 N 1.46503 * 109.73680 * 176.22190 * 15 14 13 18 18 C 1.34771 * 120.00339 * 274.99770 * 17 15 14 19 19 O 1.21619 * 119.99857 * 0.02562 * 18 17 15 20 20 C 1.47096 * 120.00375 * 179.97438 * 18 17 15 21 21 C 1.32083 * 118.88082 * 180.02562 * 20 18 17 22 22 C 1.50273 * 122.57758 * 180.37507 * 21 20 18 23 23 O 1.42889 * 110.09362 * 344.35188 * 22 21 20 24 24 C 1.43271 * 113.10179 * 50.53165 * 23 22 21 25 25 C 1.50424 * 118.87494 * 359.73928 * 20 18 17 26 26 C 1.51737 * 108.31759 * 296.22019 * 15 14 13 27 27 C 1.50737 * 112.35360 * 58.26991 * 26 15 14 28 28 H 1.09002 * 109.26745 * 187.02711 * 27 26 15 29 29 C 1.47817 * 125.65028 * 180.02562 * 9 7 2 30 30 H 0.97002 * 120.00247 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.96289 * 61.62127 * 10 9 7 32 32 H 1.08997 * 109.96368 * 300.37504 * 10 9 7 33 33 H 1.08998 * 109.16817 * 317.61211 * 13 11 10 34 34 H 1.09002 * 109.16363 * 76.80638 * 13 11 10 35 35 H 1.09005 * 109.67573 * 182.08585 * 14 13 11 36 36 H 1.09001 * 109.67857 * 302.58168 * 14 13 11 37 37 H 0.97003 * 119.99677 * 95.00377 * 17 15 14 38 38 H 1.07996 * 118.71522 * 0.34977 * 21 20 18 39 39 H 1.08994 * 109.36872 * 104.55002 * 22 21 20 40 40 H 1.09005 * 109.36280 * 224.29188 * 22 21 20 41 41 H 1.09005 * 109.63750 * 50.85317 * 24 23 22 42 42 H 1.08997 * 109.64505 * 171.26133 * 24 23 22 43 43 H 1.09000 * 109.45636 * 283.37546 * 25 20 18 44 44 H 1.09001 * 109.45257 * 43.30880 * 25 20 18 45 45 H 1.08996 * 108.64560 * 297.55444 * 26 15 14 46 46 H 1.08998 * 108.77999 * 179.07381 * 26 15 14 47 47 H 1.08995 * 110.51497 * 84.66774 * 29 9 7 48 48 H 1.09005 * 110.50926 * 321.95601 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1390 -2.5329 0.0006 11 6 -0.4438 -4.0560 0.0264 12 1 -1.3316 -4.3112 -0.5521 13 6 -0.5715 -4.4464 1.5002 14 6 -0.4491 -5.9569 1.6797 15 6 0.9460 -6.3885 1.2127 16 1 1.7060 -5.8235 1.7525 17 7 1.1278 -7.8217 1.4562 18 6 1.5434 -8.2528 2.6635 19 8 1.7672 -7.4521 3.5511 20 6 1.7254 -9.6918 2.9081 21 6 2.1331 -10.0898 4.0997 22 6 2.3540 -11.5373 4.4375 23 8 1.7301 -12.3706 3.4587 24 6 2.0764 -12.0152 2.1147 25 6 1.4345 -10.6604 1.7946 26 6 1.0632 -6.0975 -0.2718 27 6 0.8405 -4.6409 -0.5898 28 1 0.8116 -4.5093 -1.6715 29 6 1.9350 -3.7347 0.0016 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5573 -2.0849 -0.9008 32 1 -0.5603 -2.0540 0.8844 33 1 0.2158 -3.9535 2.0706 34 1 -1.5416 -4.1191 1.8744 35 1 -0.5800 -6.2133 2.7310 36 1 -1.2090 -6.4603 1.0819 37 1 0.9490 -8.4603 0.7483 38 1 2.3152 -9.3458 4.8610 39 1 3.4240 -11.7442 4.4594 40 1 1.9248 -11.7495 5.4168 41 1 3.1602 -11.9427 2.0226 42 1 1.7003 -12.7725 1.4269 43 1 0.3562 -10.7808 1.6905 44 1 1.8482 -10.2763 0.8621 45 1 0.3224 -6.6946 -0.8036 46 1 2.0588 -6.3864 -0.6085 47 1 2.1781 -4.0432 1.0183 48 1 2.8255 -3.7514 -0.6269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979684639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:23 Heat of formation + Delta-G solvation = -50.409180 kcal Electronic energy + Delta-G solvation = -27611.058595 eV Core-core repulsion = 23859.215580 eV Total energy + Delta-G solvation = -3751.843016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.58981 -39.57317 -38.59009 -35.62337 -34.17422 -33.31588 -31.66505 -31.45377 -30.74472 -28.92705 -26.69585 -25.87038 -24.84396 -24.09489 -22.18808 -22.09122 -20.99895 -19.87737 -19.07072 -18.15481 -17.67256 -16.86895 -16.70693 -16.14202 -15.69867 -15.52870 -15.00198 -14.72736 -14.45260 -14.11605 -13.83985 -13.75389 -13.62241 -13.51037 -13.07986 -12.91340 -12.49689 -12.37138 -12.05878 -11.94566 -11.65779 -11.57673 -11.23059 -11.08077 -10.99494 -10.92949 -10.64129 -10.52948 -10.44290 -9.99142 -9.86905 -9.84299 -9.60737 -9.51228 -9.46626 -9.39456 -8.93122 -8.54169 -6.75832 -5.65584 -2.98295 1.07038 3.05228 3.13124 3.43896 3.45493 3.47983 3.49251 4.26416 4.33220 4.43032 4.54554 4.75188 4.81533 4.90136 4.94510 4.95060 5.10547 5.18888 5.27366 5.31154 5.43356 5.45148 5.48856 5.57314 5.61984 5.74509 5.83459 5.86021 5.92899 5.96669 6.09346 6.11844 6.19156 6.28499 6.37871 6.47384 6.52263 6.58497 6.61574 6.68453 6.83876 6.96044 7.05911 7.46238 7.61586 7.68301 7.88414 8.16635 8.31311 9.27932 9.88112 10.55339 11.46032 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.029562 B = 0.002504 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.946565 B =11181.289075 C =11424.835835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.184 3.816 11 C -0.113 4.113 12 H 0.073 0.927 13 C -0.104 4.104 14 C -0.123 4.123 15 C 0.143 3.857 16 H 0.094 0.906 17 N -0.719 5.719 18 C 0.549 3.451 19 O -0.538 6.538 20 C -0.166 4.166 21 C -0.116 4.116 22 C 0.085 3.915 23 O -0.378 6.378 24 C 0.059 3.941 25 C -0.120 4.120 26 C -0.107 4.107 27 C -0.092 4.092 28 H 0.072 0.928 29 C 0.139 3.861 30 H 0.252 0.748 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.396 0.604 38 H 0.137 0.863 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.021 0.979 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 -25.559 2.494 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.059 3.941 11 C -0.132 4.132 12 H 0.091 0.909 13 C -0.142 4.142 14 C -0.161 4.161 15 C 0.040 3.960 16 H 0.112 0.888 17 N -0.369 5.369 18 C 0.336 3.664 19 O -0.416 6.416 20 C -0.169 4.169 21 C -0.136 4.136 22 C 0.009 3.991 23 O -0.296 6.296 24 C -0.017 4.017 25 C -0.157 4.157 26 C -0.146 4.146 27 C -0.112 4.112 28 H 0.091 0.909 29 C 0.013 3.987 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.231 0.769 38 H 0.154 0.846 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.038 0.962 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.331 -24.860 3.156 25.095 hybrid contribution 0.489 0.982 -0.462 1.190 sum 1.820 -23.878 2.694 24.099 Atomic orbital electron populations 1.69950 1.04828 1.25015 1.57323 1.24786 0.95714 0.97583 1.02500 0.86210 0.78441 0.83333 0.77852 1.21264 1.21650 1.21224 1.19017 0.90378 0.82528 1.43480 0.90624 1.44555 1.01670 0.99792 1.87220 1.21463 0.84254 0.87530 1.00867 1.22458 0.96259 0.99672 0.94796 0.90882 1.21451 1.02181 0.93552 0.96988 1.21885 0.95876 0.97541 1.00842 1.20892 0.98601 0.79573 0.96961 0.88797 1.46054 1.68208 1.09051 1.13586 1.18378 0.77009 0.88363 0.82623 1.90820 1.50946 1.56163 1.43647 1.20923 1.05683 0.93473 0.96860 1.23719 0.94066 0.98822 0.97020 1.21611 0.98289 0.86159 0.93075 1.88139 1.71016 1.55320 1.15173 1.22697 0.99194 0.95782 0.84050 1.21115 1.02769 0.94776 0.97042 1.20942 1.01649 0.97664 0.94306 1.21358 0.97330 0.92053 1.00419 0.90940 1.21511 0.94141 0.86187 0.96906 0.93792 0.94380 0.93349 0.91172 0.92266 0.92177 0.92299 0.76931 0.84553 0.90819 0.86962 0.92379 0.88024 0.89261 0.89585 0.92071 0.91864 0.96188 0.94641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 10.32 55.49 0.57 -26.97 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.66 3.41 -169.61 -0.58 -16.24 16 10 C 0.18 4.46 4.66 -2.43 -0.01 4.45 16 11 C -0.11 -2.06 3.61 -88.85 -0.32 -2.38 16 12 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.10 -1.79 4.62 -26.94 -0.12 -1.92 16 14 C -0.12 -1.79 5.53 -26.77 -0.15 -1.93 16 15 C 0.14 1.99 2.26 -68.40 -0.15 1.84 16 16 H 0.09 1.61 6.27 -51.92 -0.33 1.28 16 17 N -0.72 -8.16 5.05 -55.45 -0.28 -8.44 16 18 C 0.55 7.21 7.70 -12.67 -0.10 7.11 16 19 O -0.54 -9.37 15.74 5.26 0.08 -9.28 16 20 C -0.17 -1.65 5.86 -103.09 -0.60 -2.26 16 21 C -0.12 -1.08 9.58 -36.44 -0.35 -1.43 16 22 C 0.08 0.59 7.04 35.80 0.25 0.84 16 23 O -0.38 -3.16 10.83 -35.23 -0.38 -3.54 16 24 C 0.06 0.37 6.89 37.31 0.26 0.62 16 25 C -0.12 -0.81 5.31 -27.86 -0.15 -0.95 16 26 C -0.11 -1.39 4.75 -28.51 -0.14 -1.53 16 27 C -0.09 -1.56 2.86 -90.76 -0.26 -1.82 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 C 0.14 2.89 6.17 -2.84 -0.02 2.88 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.04 1.03 7.51 -51.93 -0.39 0.64 16 32 H 0.05 1.31 6.99 -51.93 -0.36 0.95 16 33 H 0.07 1.42 7.15 -51.93 -0.37 1.04 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 3.24 6.91 -40.82 -0.28 2.96 16 38 H 0.14 1.39 7.29 -52.49 -0.38 1.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.44 7.30 -51.93 -0.38 0.06 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.02 0.43 6.15 -51.93 -0.32 0.11 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -33.92 366.32 -10.05 -43.97 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.85 Total: 0.88 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.11 Total: -3.42 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.29 Total: -51.64 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.30 Total: -12.83 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.92 -10.05 -43.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979684639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.442 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds