Wall clock time and date at job start Tue Mar 31 2020 12:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99957 * 2 1 4 4 H 1.48500 * 109.47196 * 5.36926 * 3 2 1 5 5 H 1.48502 * 109.47368 * 125.36805 * 3 2 1 6 6 H 1.48505 * 109.47076 * 245.36847 * 3 2 1 7 7 C 1.38816 * 119.99765 * 179.72006 * 2 1 3 8 8 H 1.07996 * 119.99978 * 5.30833 * 7 2 1 9 9 N 1.36939 * 119.99726 * 185.30947 * 7 2 1 10 10 C 1.47168 * 135.99997 * 353.87355 * 9 7 2 11 11 C 1.52669 * 87.95856 * 206.73558 * 10 9 7 12 12 C 1.47154 * 135.99854 * 174.24158 * 9 7 2 13 13 C 1.52555 * 113.91231 * 88.15582 * 11 10 9 14 14 C 1.53350 * 109.13112 * 190.30503 * 13 11 10 15 15 N 1.46885 * 108.74798 * 307.75815 * 14 13 11 16 16 C 1.34783 * 120.46152 * 235.60126 * 15 14 13 17 17 O 1.21282 * 119.99890 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.99831 * 0.02562 * 16 15 14 19 19 H 1.08998 * 110.66553 * 56.78828 * 18 16 15 20 20 C 1.54996 * 110.75477 * 293.36837 * 18 16 15 21 21 C 1.55822 * 102.79009 * 241.67695 * 20 18 16 22 22 H 1.08999 * 115.38901 * 158.10834 * 21 20 18 23 23 C 1.55815 * 105.32577 * 287.30955 * 21 20 18 24 24 C 1.56774 * 102.93453 * 72.47618 * 23 21 20 25 25 C 1.55822 * 110.74709 * 180.02562 * 18 16 15 26 26 H 1.09003 * 115.39130 * 320.21180 * 25 18 16 27 27 O 1.46532 * 101.24318 * 32.41731 * 21 20 18 28 28 C 1.46895 * 119.07647 * 55.62614 * 15 14 13 29 29 C 1.52552 * 114.25034 * 220.74866 * 11 10 9 30 30 H 0.96998 * 120.00043 * 174.98068 * 1 2 3 31 31 H 1.09003 * 113.48703 * 321.43225 * 10 9 7 32 32 H 1.08995 * 113.48815 * 91.94215 * 10 9 7 33 33 H 1.08999 * 113.49320 * 268.05784 * 12 9 7 34 34 H 1.08994 * 113.49412 * 38.56990 * 12 9 7 35 35 H 1.09006 * 109.52782 * 310.20167 * 13 11 10 36 36 H 1.09002 * 109.52954 * 70.40686 * 13 11 10 37 37 H 1.08998 * 109.59147 * 187.97757 * 14 13 11 38 38 H 1.09003 * 109.59304 * 67.53659 * 14 13 11 39 39 H 1.09007 * 110.74715 * 0.02562 * 20 18 16 40 40 H 1.08999 * 110.75223 * 123.35161 * 20 18 16 41 41 H 1.08998 * 110.74745 * 191.01468 * 23 21 20 42 42 H 1.09007 * 110.74974 * 314.18067 * 23 21 20 43 43 H 1.09005 * 111.52268 * 242.07819 * 24 23 21 44 44 H 1.08998 * 110.74904 * 118.17737 * 24 23 21 45 45 H 1.09003 * 109.58798 * 184.58806 * 28 15 14 46 46 H 1.09000 * 109.58956 * 64.14053 * 28 15 14 47 47 H 1.08998 * 109.53009 * 289.74306 * 29 11 10 48 48 H 1.09004 * 109.52731 * 49.88002 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2905 2.7433 0.1310 5 1 3.1995 1.6412 1.1417 6 1 3.0030 1.7546 -1.2727 7 6 2.0102 -1.2022 0.0059 8 1 1.4737 -2.1359 -0.0761 9 7 3.3752 -1.2042 0.1156 10 6 4.4373 -0.1856 0.1339 11 6 5.3898 -1.2477 -0.4098 12 6 4.4240 -2.2262 0.2605 13 6 5.4105 -1.3385 -1.9325 14 6 6.1907 -2.5907 -2.3507 15 7 7.4988 -2.5769 -1.6826 16 6 8.6349 -2.6585 -2.4031 17 8 9.7105 -2.6468 -1.8428 18 6 8.5688 -2.7641 -3.9049 19 1 8.0165 -1.9238 -4.3257 20 6 7.9355 -4.1123 -4.3333 21 6 9.0847 -4.7939 -5.1352 22 1 9.0165 -5.8785 -5.2191 23 6 9.1699 -4.0104 -6.4793 24 6 9.8051 -2.6433 -6.0489 25 6 9.9998 -2.8462 -4.5161 26 1 10.7447 -2.2009 -4.0504 27 8 10.2649 -4.2843 -4.4320 28 6 7.5514 -2.4736 -0.2182 29 6 6.7812 -1.2204 0.2152 30 1 -0.4850 -0.8368 -0.0735 31 1 4.2631 0.6361 -0.5608 32 1 4.6943 0.1561 1.1365 33 1 4.6774 -2.4447 1.2979 34 1 4.2388 -3.1252 -0.3273 35 1 4.3890 -1.4035 -2.3075 36 1 5.8950 -0.4530 -2.3438 37 1 6.3323 -2.5892 -3.4314 38 1 5.6380 -3.4820 -2.0536 39 1 7.6673 -4.7077 -3.4604 40 1 7.0665 -3.9459 -4.9699 41 1 9.8127 -4.5306 -7.1894 42 1 8.1763 -3.8570 -6.9006 43 1 9.1312 -1.8095 -6.2459 44 1 10.7646 -2.4907 -6.5431 45 1 8.5893 -2.3950 0.1055 46 1 7.0931 -3.3566 0.2271 47 1 7.3141 -0.3308 -0.1206 48 1 6.6924 -1.2035 1.3015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035802496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:11 Heat of formation + Delta-G solvation = -1.753122 kcal Electronic energy + Delta-G solvation = -28578.582574 eV Core-core repulsion = 24828.849443 eV Total energy + Delta-G solvation = -3749.733131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47020 -40.18347 -38.71423 -35.97775 -33.08169 -32.51988 -31.74766 -30.74861 -30.40713 -29.98229 -27.02237 -25.63674 -24.29867 -23.44228 -22.69001 -21.88183 -20.99147 -20.51461 -19.47733 -18.08329 -17.48415 -17.18577 -16.94422 -16.16899 -15.60411 -15.33105 -15.18436 -14.88968 -14.54991 -14.26928 -14.18901 -13.51594 -13.47151 -13.23561 -13.11985 -12.89767 -12.72827 -12.30009 -12.11605 -12.03057 -11.88060 -11.79377 -11.66814 -11.42625 -11.30601 -11.12229 -10.91642 -10.79651 -10.74753 -10.48949 -10.29468 -10.16883 -9.93000 -9.65752 -9.21966 -9.14406 -8.91897 -8.53771 -7.14348 -6.33374 -3.24114 2.57804 2.91673 3.37683 3.42060 3.54607 3.62642 4.10786 4.16701 4.37367 4.49255 4.52355 4.57141 4.69955 4.73100 4.74775 4.81471 4.82895 4.95400 5.03980 5.15071 5.16093 5.21273 5.33186 5.42718 5.46722 5.48847 5.50378 5.60224 5.65384 5.66187 5.67673 5.73125 5.78319 5.84167 5.92969 6.04607 6.13911 6.22479 6.25201 6.28642 6.35558 6.38684 6.50305 6.58993 6.90784 7.10198 7.38727 8.14696 8.21500 8.96009 9.48973 10.36212 11.19383 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.022833 B = 0.003236 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.985638 B = 8650.111348 C = 9034.364223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.026 4.026 3 Si 1.072 2.928 4 H -0.296 1.296 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.302 4.302 8 H 0.081 0.919 9 N -0.627 5.627 10 C 0.106 3.894 11 C -0.103 4.103 12 C 0.133 3.867 13 C -0.102 4.102 14 C 0.108 3.892 15 N -0.606 5.606 16 C 0.525 3.475 17 O -0.541 6.541 18 C -0.141 4.141 19 H 0.109 0.891 20 C -0.138 4.138 21 C 0.059 3.941 22 H 0.131 0.869 23 C -0.148 4.148 24 C -0.150 4.150 25 C 0.089 3.911 26 H 0.135 0.865 27 O -0.364 6.364 28 C 0.115 3.885 29 C -0.115 4.115 30 H 0.260 0.740 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.104 -6.943 -11.845 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.224 4.224 3 Si 0.905 3.095 4 H -0.224 1.224 5 H -0.214 1.214 6 H -0.222 1.222 7 C -0.428 4.428 8 H 0.099 0.901 9 N -0.355 5.355 10 C -0.019 4.019 11 C -0.104 4.104 12 C 0.006 3.994 13 C -0.140 4.140 14 C -0.014 4.014 15 N -0.339 5.339 16 C 0.313 3.687 17 O -0.418 6.418 18 C -0.162 4.162 19 H 0.126 0.874 20 C -0.176 4.176 21 C 0.001 3.999 22 H 0.148 0.852 23 C -0.186 4.186 24 C -0.187 4.187 25 C 0.030 3.970 26 H 0.152 0.848 27 O -0.282 6.282 28 C -0.007 4.007 29 C -0.154 4.154 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.369 -5.431 -11.376 23.110 hybrid contribution -0.311 -1.508 0.015 1.540 sum 19.057 -6.939 -11.361 23.247 Atomic orbital electron populations 1.70918 1.05349 1.29376 1.52299 1.25708 0.96444 1.00919 0.99334 0.83670 0.73701 0.76021 0.76125 1.22359 1.21448 1.22236 1.20126 0.78283 0.95542 1.48862 0.90083 1.45971 1.01239 1.02005 1.86253 1.22662 0.87596 0.93582 0.98052 1.21900 0.92938 1.00338 0.95209 1.22325 0.87132 0.93102 0.96819 1.21510 1.01329 0.96779 0.94361 1.21873 0.83018 0.99427 0.97094 1.48094 1.06048 1.72392 1.07373 1.20306 0.83631 0.75759 0.88986 1.90677 1.28382 1.50282 1.72454 1.23076 0.99533 1.00276 0.93338 0.87350 1.23323 0.98536 0.94637 1.01114 1.24707 0.85016 0.99165 0.90998 0.85151 1.23545 1.01619 0.95887 0.97541 1.23580 1.01818 0.97674 0.95664 1.24462 0.94295 0.84075 0.94133 0.84754 1.90142 1.42296 1.18687 1.77100 1.21592 1.01812 0.98188 0.79076 1.21752 0.95261 0.97701 1.00730 0.92973 0.93155 0.93822 0.94609 0.94011 0.89185 0.91859 0.89917 0.90970 0.90196 0.89418 0.90747 0.90407 0.90185 0.90443 0.89237 0.91428 0.91647 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.36 13.70 55.49 0.76 -28.60 16 2 C -0.03 -0.75 5.50 -17.43 -0.10 -0.85 16 3 Si 1.07 26.59 25.15 -169.99 -4.27 22.32 16 4 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 5 H -0.29 -6.71 6.17 56.52 0.35 -6.36 16 6 H -0.29 -6.83 6.53 56.52 0.37 -6.46 16 7 C -0.30 -8.50 11.09 -15.06 -0.17 -8.67 16 8 H 0.08 2.41 8.05 -52.49 -0.42 1.99 16 9 N -0.63 -14.82 3.47 -184.86 -0.64 -15.46 16 10 C 0.11 2.17 4.83 -8.36 -0.04 2.13 16 11 C -0.10 -1.64 0.83 -155.16 -0.13 -1.77 16 12 C 0.13 2.46 7.63 -8.21 -0.06 2.40 16 13 C -0.10 -1.45 5.25 -26.78 -0.14 -1.59 16 14 C 0.11 1.23 5.64 -3.65 -0.02 1.21 16 15 N -0.61 -7.51 2.94 -172.63 -0.51 -8.02 16 16 C 0.53 6.89 6.90 -10.98 -0.08 6.81 16 17 O -0.54 -8.95 15.30 5.56 0.08 -8.87 16 18 C -0.14 -1.37 1.88 -89.21 -0.17 -1.54 16 19 H 0.11 0.88 7.24 -51.93 -0.38 0.50 16 20 C -0.14 -1.14 4.61 -24.17 -0.11 -1.25 16 21 C 0.06 0.49 5.71 -23.72 -0.14 0.36 16 22 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 23 C -0.15 -0.98 6.57 -23.19 -0.15 -1.14 16 24 C -0.15 -1.08 6.66 -23.18 -0.15 -1.24 16 25 C 0.09 0.90 4.55 -23.71 -0.11 0.79 16 26 H 0.13 1.45 7.78 -51.93 -0.40 1.04 16 27 O -0.36 -4.41 11.65 -35.23 -0.41 -4.83 16 28 C 0.12 1.47 6.35 -3.65 -0.02 1.44 16 29 C -0.12 -1.54 5.31 -26.78 -0.14 -1.69 16 30 H 0.26 8.04 8.73 -40.82 -0.36 7.69 16 31 H 0.05 1.07 4.66 -51.93 -0.24 0.83 16 32 H 0.04 0.89 7.61 -51.93 -0.40 0.50 16 33 H 0.04 0.65 8.06 -51.93 -0.42 0.24 16 34 H 0.04 0.75 7.53 -51.93 -0.39 0.36 16 35 H 0.09 1.49 7.95 -51.93 -0.41 1.08 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.75 4.95 -51.93 -0.26 0.49 16 38 H 0.07 0.83 7.60 -51.93 -0.39 0.43 16 39 H 0.08 0.75 7.62 -51.92 -0.40 0.35 16 40 H 0.09 0.55 7.57 -51.93 -0.39 0.15 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.42 7.81 -51.93 -0.41 0.01 16 43 H 0.08 0.48 7.80 -51.93 -0.40 0.08 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 1.19 6.97 -51.93 -0.36 0.83 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 356.18 15.07 5.37 5.37 Total: -1.00 -34.40 356.18 -9.22 -43.62 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.87 Total: -0.94 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.73 Total: -4.60 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.39 Total: -52.08 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.33 Total: -13.69 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -4.27 Total: 22.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.40 -9.22 -43.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035802496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.866 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds