Wall clock time and date at job start Tue Mar 31 2020 13:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48507 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47226 * 300.00153 * 3 2 1 6 6 H 1.48496 * 109.47465 * 60.00070 * 3 2 1 7 7 C 1.38816 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99485 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00241 * 0.02562 * 7 2 1 10 10 C 1.47166 * 135.99715 * 359.62678 * 9 7 2 11 11 C 1.52940 * 87.85763 * 206.92657 * 10 9 7 12 12 C 1.47154 * 136.00356 * 179.97438 * 9 7 2 13 13 C 1.52547 * 114.11734 * 87.94898 * 11 10 9 14 14 C 1.53357 * 109.13389 * 190.31775 * 13 11 10 15 15 N 1.46887 * 108.74564 * 307.75837 * 14 13 11 16 16 C 1.34775 * 120.45888 * 235.59469 * 15 14 13 17 17 O 1.21283 * 119.99831 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00308 * 0.03083 * 16 15 14 19 19 H 1.09007 * 115.56387 * 56.84071 * 18 16 15 20 20 C 1.53177 * 117.52592 * 202.70120 * 18 16 15 21 21 C 1.52127 * 59.77842 * 107.41789 * 20 18 16 22 22 C 1.54029 * 121.48046 * 249.14497 * 21 20 18 23 23 C 1.55181 * 101.82878 * 195.70178 * 22 21 20 24 24 O 1.44456 * 103.63637 * 36.33180 * 23 22 21 25 25 C 1.43998 * 107.04312 * 320.42887 * 24 23 22 26 26 C 1.46890 * 119.07755 * 55.62511 * 15 14 13 27 27 C 1.52558 * 114.12027 * 220.62082 * 11 10 9 28 28 H 0.96993 * 120.00481 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.49268 * 321.67236 * 10 9 7 30 30 H 1.09000 * 113.48937 * 92.18048 * 10 9 7 31 31 H 1.08996 * 113.49635 * 267.83286 * 12 9 7 32 32 H 1.09011 * 113.48680 * 38.33217 * 12 9 7 33 33 H 1.09001 * 109.52664 * 310.21729 * 13 11 10 34 34 H 1.09002 * 109.53047 * 70.41912 * 13 11 10 35 35 H 1.08995 * 109.59435 * 187.97485 * 14 13 11 36 36 H 1.09003 * 109.58647 * 67.53661 * 14 13 11 37 37 H 1.08995 * 117.52803 * 214.84955 * 20 18 16 38 38 H 1.09007 * 117.51757 * 359.97438 * 20 18 16 39 39 H 1.09002 * 110.95621 * 313.83479 * 22 21 20 40 40 H 1.08997 * 110.96158 * 77.56582 * 22 21 20 41 41 H 1.08998 * 110.59394 * 277.79127 * 23 22 21 42 42 H 1.09008 * 110.59133 * 154.86278 * 23 22 21 43 43 H 1.08997 * 109.97586 * 266.93941 * 25 24 23 44 44 H 1.09002 * 110.00109 * 145.68463 * 25 24 23 45 45 H 1.08996 * 109.59270 * 184.58247 * 26 15 14 46 46 H 1.09002 * 109.71404 * 64.21414 * 26 15 14 47 47 H 1.09003 * 109.52495 * 289.56698 * 27 11 10 48 48 H 1.09001 * 109.52722 * 49.70510 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.0890 -2.7937 0.0067 11 6 0.3451 -4.0899 0.6926 12 6 1.6816 -3.8159 0.0005 13 6 0.4023 -4.0010 2.2144 14 6 1.0884 -5.2567 2.7660 15 7 0.4227 -6.4416 2.2087 16 6 -0.0839 -7.3875 3.0243 17 8 -0.6315 -8.3627 2.5552 18 6 0.0299 -7.2333 4.5191 19 1 -0.3982 -6.3197 4.9317 20 6 -0.0564 -8.5038 5.3703 21 6 1.2758 -7.7916 5.1905 22 6 2.4186 -8.4182 4.3696 23 6 3.6351 -7.5633 4.8137 24 8 3.3811 -7.3106 6.2131 25 6 1.9690 -7.0625 6.3476 26 6 0.3175 -6.5816 0.7503 27 6 -0.3744 -5.3355 0.1844 28 1 -0.4850 0.8399 0.0004 29 1 -0.7196 -2.1616 0.6319 30 1 -0.5014 -2.9470 -0.9905 31 1 1.7500 -4.2467 -0.9983 32 1 2.5476 -4.0478 0.6206 33 1 0.9700 -3.1175 2.5067 34 1 -0.6097 -3.9335 2.6138 35 1 1.0081 -5.2696 3.8529 36 1 2.1389 -5.2569 2.4749 37 1 -0.5417 -8.4264 6.3432 38 1 -0.1958 -9.4509 4.8490 39 1 2.5604 -9.4658 4.6353 40 1 2.2355 -8.3101 3.3006 41 1 3.6706 -6.6278 4.2555 42 1 4.5627 -8.1217 4.6873 43 1 1.7714 -5.9924 6.2851 44 1 1.6112 -7.4519 7.3008 45 1 -0.2705 -7.4672 0.5096 46 1 1.3133 -6.6753 0.3171 47 1 -1.4137 -5.3152 0.5124 48 1 -0.3365 -5.3593 -0.9047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035833184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:31 Heat of formation + Delta-G solvation = 7.053896 kcal Electronic energy + Delta-G solvation = -28463.616724 eV Core-core repulsion = 24714.265495 eV Total energy + Delta-G solvation = -3749.351230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95992 -39.74030 -38.64721 -36.18500 -35.68934 -32.55472 -31.19710 -30.58191 -30.40502 -27.86116 -26.98491 -25.12318 -24.61438 -23.36958 -22.98556 -22.73419 -21.15631 -20.22963 -19.08493 -17.73012 -16.83253 -16.70652 -16.66949 -16.33673 -15.84675 -15.31100 -14.91883 -14.76446 -14.66001 -14.11427 -13.79897 -13.74580 -13.66036 -13.27265 -12.90297 -12.81511 -12.63802 -12.41100 -12.25829 -12.15209 -11.72648 -11.69623 -11.33722 -11.11629 -11.06336 -10.91237 -10.86580 -10.68229 -10.43509 -10.33097 -10.26430 -9.91238 -9.75400 -9.66431 -9.62954 -9.23350 -8.83186 -8.45860 -6.89031 -5.79204 -3.11174 2.43960 2.93418 3.36229 3.39490 3.41848 3.44284 3.63620 3.98254 4.31760 4.40834 4.43223 4.58414 4.69990 4.90867 4.97234 5.02060 5.11767 5.12663 5.21201 5.31535 5.36641 5.37430 5.41071 5.44718 5.47562 5.50372 5.60464 5.62168 5.64668 5.70056 5.79077 5.81466 5.84370 5.97357 6.13128 6.24763 6.32075 6.46955 6.53902 6.55805 6.60687 6.77138 6.80461 7.20200 7.33203 7.43985 7.54547 7.95526 8.16262 9.01636 9.68319 10.63106 11.38242 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.003464 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.118325 B = 8080.945783 C = 9022.610953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.216 4.216 8 H 0.080 0.920 9 N -0.608 5.608 10 C 0.166 3.834 11 C -0.115 4.115 12 C 0.128 3.872 13 C -0.095 4.095 14 C 0.111 3.889 15 N -0.598 5.598 16 C 0.545 3.455 17 O -0.547 6.547 18 C -0.168 4.168 19 H 0.131 0.869 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.122 4.122 23 C 0.050 3.950 24 O -0.375 6.375 25 C 0.084 3.916 26 C 0.114 3.886 27 C -0.113 4.113 28 H 0.253 0.747 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.761 -16.607 10.386 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.344 4.344 8 H 0.098 0.902 9 N -0.333 5.333 10 C 0.041 3.959 11 C -0.116 4.116 12 C 0.001 3.999 13 C -0.133 4.133 14 C -0.012 4.012 15 N -0.330 5.330 16 C 0.333 3.667 17 O -0.425 6.425 18 C -0.189 4.189 19 H 0.149 0.851 20 C -0.163 4.163 21 C -0.145 4.145 22 C -0.159 4.159 23 C -0.027 4.027 24 O -0.294 6.294 25 C 0.007 3.993 26 C -0.008 4.008 27 C -0.152 4.152 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.706 -16.719 10.286 19.703 hybrid contribution 0.181 1.223 -0.491 1.331 sum 1.887 -15.496 9.794 18.428 Atomic orbital electron populations 1.69833 1.04994 1.25178 1.56619 1.24769 0.95634 0.97424 1.02555 0.86081 0.78758 0.83851 0.77287 1.20469 1.21784 1.21701 1.18966 0.90089 0.81527 1.43795 0.90214 1.45573 1.02655 0.99179 1.85924 1.22035 0.88774 0.88931 0.96200 1.22079 0.98776 0.95762 0.95020 1.22392 0.94410 0.86812 0.96259 1.21423 1.00811 0.96892 0.94165 1.21842 0.96685 0.84556 0.98070 1.48066 1.56663 1.21509 1.06801 1.19521 0.77705 0.82261 0.87230 1.90671 1.44040 1.30844 1.76989 1.22289 1.03270 1.00963 0.92351 0.85114 1.22948 0.96739 0.96097 1.00550 1.22264 0.90197 1.02823 0.99215 1.22634 0.93011 1.00200 1.00083 1.23580 0.98159 0.98784 0.82150 1.88931 1.23135 1.91992 1.25359 1.22566 0.80937 0.98910 0.96854 1.21629 1.01137 0.99294 0.78708 1.21727 0.99449 0.93637 1.00428 0.93738 0.91207 0.95877 0.95243 0.94618 0.89288 0.92087 0.90261 0.91217 0.87537 0.87302 0.89760 0.90037 0.91612 0.88774 0.91511 0.89222 0.89491 0.91480 0.91828 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 11.51 55.49 0.64 -26.15 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -5.90 10.74 -15.06 -0.16 -6.06 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.61 -14.94 3.55 -184.69 -0.66 -15.59 16 10 C 0.17 3.75 6.54 -8.23 -0.05 3.70 16 11 C -0.11 -1.97 0.84 -155.01 -0.13 -2.10 16 12 C 0.13 2.46 7.63 -8.21 -0.06 2.40 16 13 C -0.09 -1.47 5.27 -26.78 -0.14 -1.62 16 14 C 0.11 1.36 6.25 -3.65 -0.02 1.34 16 15 N -0.60 -7.67 2.94 -172.63 -0.51 -8.17 16 16 C 0.55 7.22 6.01 -10.99 -0.07 7.15 16 17 O -0.55 -8.96 15.90 5.55 0.09 -8.87 16 18 C -0.17 -1.71 4.27 -92.12 -0.39 -2.10 16 19 H 0.13 1.17 7.71 -51.93 -0.40 0.77 16 20 C -0.13 -1.12 9.82 -27.08 -0.27 -1.39 16 21 C -0.14 -1.30 2.44 -154.68 -0.38 -1.68 16 22 C -0.12 -1.13 6.74 -25.04 -0.17 -1.30 16 23 C 0.05 0.45 7.73 38.31 0.30 0.75 16 24 O -0.38 -4.05 11.53 -35.23 -0.41 -4.45 16 25 C 0.08 0.73 7.50 37.33 0.28 1.01 16 26 C 0.11 1.50 6.35 -3.65 -0.02 1.48 16 27 C -0.11 -1.64 5.30 -26.77 -0.14 -1.78 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.07 1.77 7.11 -51.93 -0.37 1.40 16 30 H 0.02 0.55 8.09 -51.93 -0.42 0.12 16 31 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 32 H 0.04 0.65 7.53 -51.92 -0.39 0.26 16 33 H 0.09 1.61 7.95 -51.93 -0.41 1.20 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.83 6.02 -51.93 -0.31 0.52 16 36 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 37 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.11 1.09 7.86 -51.93 -0.41 0.68 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.85 6.93 -51.93 -0.36 0.49 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 1.18 6.97 -51.93 -0.36 0.82 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -31.97 374.60 -9.77 -41.74 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -8.02 Total: -0.38 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.53 Total: -0.50 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.52 Total: -49.91 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.32 Total: -13.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.97 -9.77 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035833184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.792 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds