Wall clock time and date at job start Tue Mar 31 2020 13:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48507 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47226 * 300.00153 * 3 2 1 6 6 H 1.48496 * 109.47465 * 60.00070 * 3 2 1 7 7 C 1.38816 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99485 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00241 * 0.02562 * 7 2 1 10 10 C 1.47166 * 135.99715 * 359.62678 * 9 7 2 11 11 C 1.52940 * 87.85763 * 206.92657 * 10 9 7 12 12 C 1.47154 * 136.00356 * 179.97438 * 9 7 2 13 13 C 1.52547 * 114.11734 * 87.94898 * 11 10 9 14 14 C 1.53357 * 109.13389 * 190.31775 * 13 11 10 15 15 N 1.46887 * 108.74564 * 307.75837 * 14 13 11 16 16 C 1.34775 * 120.45888 * 235.59469 * 15 14 13 17 17 O 1.21283 * 119.99831 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00308 * 0.03083 * 16 15 14 19 19 H 1.09007 * 115.56387 * 56.84071 * 18 16 15 20 20 C 1.53177 * 117.52592 * 202.70120 * 18 16 15 21 21 C 1.52127 * 59.77842 * 107.41789 * 20 18 16 22 22 C 1.54029 * 121.48046 * 249.14497 * 21 20 18 23 23 C 1.55181 * 101.82878 * 195.70178 * 22 21 20 24 24 O 1.44456 * 103.63637 * 36.33180 * 23 22 21 25 25 C 1.43998 * 107.04312 * 320.42887 * 24 23 22 26 26 C 1.46890 * 119.07755 * 55.62511 * 15 14 13 27 27 C 1.52558 * 114.12027 * 220.62082 * 11 10 9 28 28 H 0.96993 * 120.00481 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.49268 * 321.67236 * 10 9 7 30 30 H 1.09000 * 113.48937 * 92.18048 * 10 9 7 31 31 H 1.08996 * 113.49635 * 267.83286 * 12 9 7 32 32 H 1.09011 * 113.48680 * 38.33217 * 12 9 7 33 33 H 1.09001 * 109.52664 * 310.21729 * 13 11 10 34 34 H 1.09002 * 109.53047 * 70.41912 * 13 11 10 35 35 H 1.08995 * 109.59435 * 187.97485 * 14 13 11 36 36 H 1.09003 * 109.58647 * 67.53661 * 14 13 11 37 37 H 1.08995 * 117.52803 * 214.84955 * 20 18 16 38 38 H 1.09007 * 117.51757 * 359.97438 * 20 18 16 39 39 H 1.09002 * 110.95621 * 313.83479 * 22 21 20 40 40 H 1.08997 * 110.96158 * 77.56582 * 22 21 20 41 41 H 1.08998 * 110.59394 * 277.79127 * 23 22 21 42 42 H 1.09008 * 110.59133 * 154.86278 * 23 22 21 43 43 H 1.08997 * 109.97586 * 266.93941 * 25 24 23 44 44 H 1.09002 * 110.00109 * 145.68463 * 25 24 23 45 45 H 1.08996 * 109.59270 * 184.58247 * 26 15 14 46 46 H 1.09002 * 109.71404 * 64.21414 * 26 15 14 47 47 H 1.09003 * 109.52495 * 289.56698 * 27 11 10 48 48 H 1.09001 * 109.52722 * 49.70510 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.0890 -2.7937 0.0067 11 6 0.3451 -4.0899 0.6926 12 6 1.6816 -3.8159 0.0005 13 6 0.4023 -4.0010 2.2144 14 6 1.0884 -5.2567 2.7660 15 7 0.4227 -6.4416 2.2087 16 6 -0.0839 -7.3875 3.0243 17 8 -0.6315 -8.3627 2.5552 18 6 0.0299 -7.2333 4.5191 19 1 -0.3982 -6.3197 4.9317 20 6 -0.0564 -8.5038 5.3703 21 6 1.2758 -7.7916 5.1905 22 6 2.4186 -8.4182 4.3696 23 6 3.6351 -7.5633 4.8137 24 8 3.3811 -7.3106 6.2131 25 6 1.9690 -7.0625 6.3476 26 6 0.3175 -6.5816 0.7503 27 6 -0.3744 -5.3355 0.1844 28 1 -0.4850 0.8399 0.0004 29 1 -0.7196 -2.1616 0.6319 30 1 -0.5014 -2.9470 -0.9905 31 1 1.7500 -4.2467 -0.9983 32 1 2.5476 -4.0478 0.6206 33 1 0.9700 -3.1175 2.5067 34 1 -0.6097 -3.9335 2.6138 35 1 1.0081 -5.2696 3.8529 36 1 2.1389 -5.2569 2.4749 37 1 -0.5417 -8.4264 6.3432 38 1 -0.1958 -9.4509 4.8490 39 1 2.5604 -9.4658 4.6353 40 1 2.2355 -8.3101 3.3006 41 1 3.6706 -6.6278 4.2555 42 1 4.5627 -8.1217 4.6873 43 1 1.7714 -5.9924 6.2851 44 1 1.6112 -7.4519 7.3008 45 1 -0.2705 -7.4672 0.5096 46 1 1.3133 -6.6753 0.3171 47 1 -1.4137 -5.3152 0.5124 48 1 -0.3365 -5.3593 -0.9047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035833184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:30 Heat of formation + Delta-G solvation = -12.184149 kcal Electronic energy + Delta-G solvation = -28464.450949 eV Core-core repulsion = 24714.265495 eV Total energy + Delta-G solvation = -3750.185454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94832 -40.92717 -39.75738 -37.24615 -36.72372 -34.43225 -32.46107 -31.86448 -31.28695 -28.95117 -28.35878 -26.64496 -25.91391 -24.61135 -24.03227 -23.69183 -22.61031 -21.07293 -20.15741 -18.88264 -18.65593 -17.90844 -17.47461 -17.15554 -16.86350 -16.80046 -16.12217 -15.99693 -15.81486 -15.61614 -15.13015 -15.03981 -14.49591 -14.44007 -14.16123 -13.80680 -13.74815 -13.51444 -13.42887 -13.26487 -13.08036 -12.90325 -12.83702 -12.60742 -12.42765 -12.16048 -12.11619 -12.01557 -11.70358 -11.65722 -11.41134 -11.14015 -11.10727 -10.92016 -10.81587 -10.72195 -10.52936 -9.61100 -8.88471 -7.89007 -5.21398 1.45975 1.46550 1.46586 1.56638 1.95130 2.48021 2.63282 2.96719 3.20689 3.32932 3.45977 3.58238 3.62307 3.64499 3.80836 3.88576 3.95800 4.12561 4.17703 4.24705 4.32789 4.36435 4.44110 4.50381 4.59711 4.67357 4.72598 4.75918 4.77494 4.81755 4.84938 4.85774 4.88277 4.90212 4.95764 5.01003 5.07079 5.10489 5.14454 5.22053 5.28399 5.34120 5.52181 5.58080 5.74887 5.86961 5.95271 6.40363 6.92836 7.13586 7.62548 8.64513 9.28731 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.003464 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.118325 B = 8080.945783 C = 9022.610953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.066 4.066 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.223 4.223 8 H 0.085 0.915 9 N -0.636 5.636 10 C 0.160 3.840 11 C -0.086 4.086 12 C 0.130 3.870 13 C -0.091 4.091 14 C 0.124 3.876 15 N -0.598 5.598 16 C 0.544 3.456 17 O -0.581 6.581 18 C -0.178 4.178 19 H 0.148 0.852 20 C -0.120 4.120 21 C -0.135 4.135 22 C -0.122 4.122 23 C 0.049 3.951 24 O -0.395 6.395 25 C 0.082 3.918 26 C 0.119 3.881 27 C -0.105 4.105 28 H 0.246 0.754 29 H 0.034 0.966 30 H 0.009 0.991 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 -17.826 11.796 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.259 4.259 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.219 1.219 7 C -0.351 4.351 8 H 0.102 0.898 9 N -0.362 5.362 10 C 0.035 3.965 11 C -0.087 4.087 12 C 0.005 3.995 13 C -0.129 4.129 14 C 0.001 3.999 15 N -0.329 5.329 16 C 0.334 3.666 17 O -0.462 6.462 18 C -0.199 4.199 19 H 0.165 0.835 20 C -0.157 4.157 21 C -0.136 4.136 22 C -0.159 4.159 23 C -0.027 4.027 24 O -0.314 6.314 25 C 0.006 3.994 26 C -0.003 4.003 27 C -0.144 4.144 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.124 0.876 43 H 0.092 0.908 44 H 0.124 0.876 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.947 -17.966 11.699 21.641 hybrid contribution -0.206 1.553 -0.970 1.843 sum 2.740 -16.413 10.729 19.799 Atomic orbital electron populations 1.70026 1.06473 1.25338 1.58436 1.25567 0.96433 1.00662 1.03248 0.85061 0.78326 0.79683 0.76597 1.18823 1.22366 1.21873 1.19354 0.90639 0.82878 1.42238 0.89757 1.45900 1.03753 1.00611 1.85912 1.22021 0.87713 0.91342 0.95468 1.21856 0.96953 0.94195 0.95741 1.22535 0.95951 0.83797 0.97179 1.21345 1.00908 0.97713 0.92921 1.21763 0.96350 0.82450 0.99308 1.48103 1.56530 1.21582 1.06706 1.20009 0.76619 0.81513 0.88468 1.90657 1.45472 1.32191 1.77867 1.22326 1.04766 1.02471 0.90315 0.83467 1.23036 0.96663 0.94839 1.01142 1.22249 0.89930 1.02416 0.99001 1.22619 0.93368 1.00583 0.99366 1.23649 0.98588 0.98899 0.81559 1.88915 1.24288 1.92131 1.26104 1.22704 0.80011 0.99407 0.97296 1.21567 1.01611 0.98043 0.79098 1.21651 0.99063 0.92837 1.00870 0.94472 0.94770 0.97332 0.94245 0.93008 0.91895 0.92044 0.87839 0.90422 0.85029 0.88657 0.89407 0.91201 0.91592 0.87649 0.90767 0.87623 0.89682 0.90109 0.92070 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 11.51 21.65 0.25 -57.09 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.97 45.24 29.55 68.60 2.03 47.26 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.22 -12.23 10.74 84.03 0.90 -11.33 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.64 -31.54 3.55 -738.24 -2.62 -34.16 16 10 C 0.16 7.45 6.54 83.31 0.55 7.99 16 11 C -0.09 -2.91 0.84 -52.51 -0.04 -2.96 16 12 C 0.13 4.87 7.63 83.32 0.64 5.51 16 13 C -0.09 -2.73 5.27 30.56 0.16 -2.57 16 14 C 0.12 2.74 6.25 86.43 0.54 3.28 16 15 N -0.60 -14.05 2.94 -818.47 -2.41 -16.45 16 16 C 0.54 13.36 6.01 87.66 0.53 13.89 16 17 O -0.58 -18.31 15.90 -3.04 -0.05 -18.36 16 18 C -0.18 -3.15 4.27 -11.76 -0.05 -3.20 16 19 H 0.15 2.13 7.71 -2.38 -0.02 2.11 16 20 C -0.12 -1.81 9.82 30.37 0.30 -1.51 16 21 C -0.14 -2.08 2.44 -52.29 -0.13 -2.20 16 22 C -0.12 -2.00 6.74 31.69 0.21 -1.78 16 23 C 0.05 0.78 7.73 72.73 0.56 1.34 16 24 O -0.40 -7.54 11.53 -148.98 -1.72 -9.26 16 25 C 0.08 1.18 7.50 72.09 0.54 1.72 16 26 C 0.12 2.89 6.35 86.42 0.55 3.44 16 27 C -0.11 -2.92 5.30 30.57 0.16 -2.76 16 28 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.03 1.81 7.11 -2.39 -0.02 1.79 16 30 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 31 H 0.04 1.43 8.06 -2.39 -0.02 1.41 16 32 H 0.05 1.78 7.53 -2.38 -0.02 1.76 16 33 H 0.06 2.26 7.95 -2.39 -0.02 2.25 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.10 1.85 6.02 -2.39 -0.01 1.83 16 36 H 0.08 1.66 7.60 -2.39 -0.02 1.64 16 37 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.75 7.86 -2.38 -0.02 1.73 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.32 6.93 -2.39 -0.02 1.31 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.08 2.18 6.97 -2.39 -0.02 2.16 16 46 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.08 2.15 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -70.41 374.60 2.30 -68.10 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.94 Total: 14.35 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.88 Total: 5.60 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -4.78 Total: -107.70 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.77 Total: -27.62 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.41 2.30 -68.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035833184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.919 kcal (2) G-P(sol) polarization free energy of solvation -70.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds