Wall clock time and date at job start Tue Mar 31 2020 13:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00164 * 2 1 4 4 H 1.48497 * 109.47568 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47069 * 299.99820 * 3 2 1 6 6 H 1.48503 * 109.47382 * 59.99595 * 3 2 1 7 7 C 1.38809 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99812 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00557 * 0.02562 * 7 2 1 10 10 C 1.47738 * 125.96835 * 359.96751 * 9 7 2 11 11 C 1.55068 * 104.86870 * 157.71887 * 10 9 7 12 12 C 1.55999 * 101.17234 * 36.83053 * 11 10 9 13 13 H 1.09000 * 110.86504 * 204.43877 * 12 11 10 14 14 C 1.52042 * 107.47270 * 83.32697 * 12 11 10 15 15 N 1.46115 * 111.67401 * 208.67176 * 14 12 11 16 16 C 1.34784 * 120.93148 * 232.42387 * 15 14 12 17 17 O 1.21280 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99848 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.47165 * 180.02562 * 18 16 15 20 20 C 1.29975 * 118.74865 * 95.00033 * 19 18 16 21 21 C 1.50233 * 122.87077 * 180.41230 * 20 19 18 22 22 O 1.42898 * 110.13236 * 344.39782 * 21 20 19 23 23 C 1.43305 * 113.01999 * 50.18546 * 22 21 20 24 24 C 1.50398 * 118.74108 * 275.00298 * 19 18 16 25 25 C 1.47073 * 118.13738 * 52.70096 * 15 14 12 26 26 C 1.53451 * 107.03293 * 300.01636 * 25 15 14 27 27 C 1.47865 * 125.80475 * 179.97438 * 9 7 2 28 28 H 1.08996 * 106.10679 * 291.37936 * 27 9 7 29 29 H 0.97000 * 119.99992 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.35822 * 38.87697 * 10 9 7 31 31 H 1.09000 * 110.45654 * 276.61544 * 10 9 7 32 32 H 1.09004 * 111.08316 * 278.85453 * 11 10 9 33 33 H 1.09007 * 111.11458 * 154.82010 * 11 10 9 34 34 H 1.08999 * 109.04427 * 88.10286 * 14 12 11 35 35 H 1.09007 * 108.98221 * 329.19447 * 14 12 11 36 36 H 1.09000 * 109.46963 * 60.00348 * 18 16 15 37 37 H 1.08999 * 109.47612 * 300.00553 * 18 16 15 38 38 H 1.08002 * 118.56584 * 0.42953 * 20 19 18 39 39 H 1.09002 * 109.35948 * 224.19563 * 21 20 19 40 40 H 1.09007 * 109.24975 * 104.52925 * 21 20 19 41 41 H 1.08996 * 109.68165 * 51.51395 * 23 22 21 42 42 H 1.09001 * 109.68605 * 172.07669 * 23 22 21 43 43 H 1.08992 * 109.44988 * 43.33466 * 24 19 18 44 44 H 1.09004 * 109.44523 * 283.40995 * 24 19 18 45 45 H 1.08996 * 109.79804 * 60.48716 * 25 15 14 46 46 H 1.08997 * 109.79829 * 181.34845 * 25 15 14 47 47 H 1.09000 * 109.96734 * 292.61628 * 26 25 15 48 48 H 1.09000 * 108.22380 * 173.80917 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1439 -2.5418 0.0007 11 6 -0.3955 -3.9625 -0.5676 12 6 0.7995 -4.7515 0.0512 13 1 1.0390 -5.6282 -0.5506 14 6 0.3968 -5.1596 1.4593 15 7 1.5572 -5.2792 2.3392 16 6 1.7686 -6.3991 3.0587 17 8 0.9901 -7.3259 2.9808 18 6 2.9727 -6.5001 3.9592 19 6 2.9763 -7.8422 4.6446 20 6 3.6659 -8.8107 4.1193 21 6 3.7274 -10.1866 4.7192 22 8 3.2523 -10.1575 6.0665 23 6 1.9855 -9.5008 6.2000 24 6 2.1816 -8.0099 5.9104 25 6 2.4848 -4.1409 2.4223 26 6 3.0330 -3.9036 1.0089 27 6 1.9315 -3.7369 0.0005 28 1 2.4037 -3.8562 -0.9746 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6038 -1.7899 -0.6406 31 1 -0.5349 -2.4644 1.0152 32 1 -0.3444 -3.9639 -1.6565 33 1 -1.3494 -4.3606 -0.2216 34 1 -0.1184 -6.1192 1.4179 35 1 -0.2816 -4.4093 1.8656 36 1 2.9335 -5.7093 4.7083 37 1 3.8805 -6.3934 3.3654 38 1 4.2191 -8.6177 3.2120 39 1 4.7584 -10.5403 4.7071 40 1 3.1064 -10.8629 4.1316 41 1 1.2764 -9.9228 5.4879 42 1 1.6094 -9.6312 7.2147 43 1 1.2091 -7.5317 5.7945 44 1 2.7171 -7.5465 6.7391 45 1 1.9567 -3.2603 2.7879 46 1 3.3081 -4.3839 3.0941 47 1 3.6629 -4.7408 0.7085 48 1 3.6368 -2.9963 1.0253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036812879.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:52 Heat of formation + Delta-G solvation = -35.579108 kcal Electronic energy + Delta-G solvation = -28085.248912 eV Core-core repulsion = 24334.048977 eV Total energy + Delta-G solvation = -3751.199935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.37914 -39.42901 -38.16419 -35.15798 -34.80570 -32.86407 -31.73269 -31.26652 -29.98540 -28.95320 -27.60082 -25.41662 -24.54618 -24.00374 -23.30789 -22.64862 -20.19259 -19.73659 -18.21179 -18.11746 -17.02388 -16.67029 -16.43787 -16.34033 -15.60567 -15.27442 -15.21004 -14.97428 -14.42714 -13.99848 -13.89482 -13.76470 -13.31932 -13.08147 -12.92364 -12.77447 -12.50197 -12.48390 -12.15106 -12.03790 -11.77709 -11.41767 -11.31394 -11.19557 -11.10353 -10.82063 -10.73668 -10.64051 -10.20325 -10.15129 -9.98429 -9.82342 -9.70330 -9.69262 -9.53171 -8.93910 -8.68995 -8.29107 -6.86743 -5.71577 -3.10940 1.92824 2.75943 3.27894 3.35117 3.40616 3.43269 3.68894 4.42417 4.47489 4.52859 4.69440 4.80955 5.04900 5.10861 5.15371 5.20270 5.22429 5.25727 5.31559 5.33136 5.39514 5.44471 5.47483 5.54007 5.58718 5.63493 5.68687 5.76155 5.82437 5.89172 6.10271 6.18204 6.24829 6.29610 6.31941 6.38409 6.53003 6.64754 6.67399 6.72774 6.87030 6.92648 6.93446 7.46262 7.57012 7.65290 7.80663 8.28556 8.33108 9.16073 9.77273 10.44537 11.34047 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.024558 B = 0.002912 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.890561 B = 9614.354492 C =10076.156299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.157 3.843 11 C -0.142 4.142 12 C -0.104 4.104 13 H 0.069 0.931 14 C 0.124 3.876 15 N -0.603 5.603 16 C 0.516 3.484 17 O -0.548 6.548 18 C -0.108 4.108 19 C -0.084 4.084 20 C -0.195 4.195 21 C 0.094 3.906 22 O -0.382 6.382 23 C 0.061 3.939 24 C -0.116 4.116 25 C 0.114 3.886 26 C -0.135 4.135 27 C 0.169 3.831 28 H 0.014 0.986 29 H 0.251 0.749 30 H 0.100 0.900 31 H 0.012 0.988 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.053 0.947 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 -15.326 8.485 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.033 3.967 11 C -0.181 4.181 12 C -0.124 4.124 13 H 0.088 0.912 14 C 0.002 3.998 15 N -0.335 5.335 16 C 0.304 3.696 17 O -0.426 6.426 18 C -0.148 4.148 19 C -0.085 4.085 20 C -0.214 4.214 21 C 0.018 3.982 22 O -0.301 6.301 23 C -0.016 4.016 24 C -0.153 4.153 25 C -0.009 4.009 26 C -0.175 4.175 27 C 0.061 3.939 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.981 -15.643 8.580 18.524 hybrid contribution 0.425 1.297 -0.396 1.421 sum 5.407 -14.347 8.184 17.379 Atomic orbital electron populations 1.69844 1.04871 1.24696 1.57461 1.24760 0.95680 0.97601 1.02562 0.86051 0.78636 0.83854 0.77254 1.20576 1.21810 1.21834 1.19031 0.90450 0.82293 1.43008 0.90471 1.44882 1.01605 0.99114 1.86440 1.21887 0.84633 0.91853 0.98337 1.23293 0.95771 0.99049 0.99969 1.21871 0.97543 0.97552 0.95393 0.91223 1.21202 0.87168 1.02088 0.89380 1.48015 1.26818 1.15465 1.43202 1.20423 0.86809 0.81811 0.80544 1.90658 1.47708 1.37897 1.66343 1.20830 0.98018 0.97126 0.98788 1.20416 0.97348 0.94396 0.96322 1.22656 1.02051 0.95659 1.00985 1.21373 1.00079 0.93883 0.82894 1.88085 1.36915 1.78303 1.26812 1.22631 0.85602 0.91227 1.02143 1.21036 1.00681 0.98032 0.95573 1.21870 0.92192 0.88790 0.98026 1.21700 0.99236 1.01622 0.94943 1.19798 0.91669 0.86532 0.95873 0.96858 0.93801 0.88220 0.96989 0.91912 0.92069 0.89985 0.91341 0.88229 0.88287 0.86753 0.88185 0.92017 0.92431 0.88608 0.89703 0.90089 0.89964 0.90731 0.92796 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.88 10.16 55.49 0.56 -25.32 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.22 -5.70 9.67 -15.06 -0.15 -5.84 16 8 H 0.08 1.93 7.14 -52.48 -0.37 1.56 16 9 N -0.59 -14.09 3.34 -164.43 -0.55 -14.63 16 10 C 0.16 3.63 5.50 -2.27 -0.01 3.62 16 11 C -0.14 -2.60 6.39 -24.03 -0.15 -2.76 16 12 C -0.10 -1.80 3.42 -89.96 -0.31 -2.11 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.12 2.07 5.64 -4.74 -0.03 2.04 16 15 N -0.60 -9.27 2.92 -173.84 -0.51 -9.78 16 16 C 0.52 7.67 7.70 -10.98 -0.08 7.58 16 17 O -0.55 -9.74 15.45 5.56 0.09 -9.66 16 18 C -0.11 -1.21 4.12 -29.04 -0.12 -1.33 16 19 C -0.08 -0.97 4.40 -100.92 -0.44 -1.41 16 20 C -0.20 -2.12 9.54 -35.96 -0.34 -2.46 16 21 C 0.09 0.92 7.04 35.78 0.25 1.18 16 22 O -0.38 -4.35 10.84 -35.23 -0.38 -4.73 16 23 C 0.06 0.61 6.89 37.23 0.26 0.87 16 24 C -0.12 -1.22 6.09 -27.96 -0.17 -1.39 16 25 C 0.11 1.67 6.48 -3.50 -0.02 1.65 16 26 C -0.14 -2.22 5.66 -27.86 -0.16 -2.37 16 27 C 0.17 3.27 2.73 -69.01 -0.19 3.08 16 28 H 0.01 0.28 8.09 -51.93 -0.42 -0.14 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.10 2.63 6.04 -51.93 -0.31 2.32 16 31 H 0.01 0.30 7.44 -51.93 -0.39 -0.09 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.00 7.94 -51.92 -0.41 0.59 16 34 H 0.08 1.37 6.97 -51.93 -0.36 1.01 16 35 H 0.07 1.22 6.80 -51.93 -0.35 0.87 16 36 H 0.10 0.97 7.84 -51.93 -0.41 0.56 16 37 H 0.10 0.97 7.54 -51.93 -0.39 0.58 16 38 H 0.11 1.13 7.83 -52.49 -0.41 0.72 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.07 0.85 5.97 -51.93 -0.31 0.54 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.08 1.39 6.93 -51.93 -0.36 1.03 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -30.62 366.56 -9.91 -40.54 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.86 Total: 1.84 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.76 Total: -0.02 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.49 Total: -49.73 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.30 Total: -14.39 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.62 -9.91 -40.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036812879.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.957 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds