Wall clock time and date at job start Tue Mar 31 2020 13:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00164 * 2 1 4 4 H 1.48497 * 109.47568 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47069 * 299.99820 * 3 2 1 6 6 H 1.48503 * 109.47382 * 59.99595 * 3 2 1 7 7 C 1.38809 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99812 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00557 * 0.02562 * 7 2 1 10 10 C 1.47738 * 125.96835 * 359.96751 * 9 7 2 11 11 C 1.55068 * 104.86870 * 157.71887 * 10 9 7 12 12 C 1.55999 * 101.17234 * 36.83053 * 11 10 9 13 13 H 1.09000 * 110.86504 * 204.43877 * 12 11 10 14 14 C 1.52042 * 107.47270 * 83.32697 * 12 11 10 15 15 N 1.46115 * 111.67401 * 208.67176 * 14 12 11 16 16 C 1.34784 * 120.93148 * 232.42387 * 15 14 12 17 17 O 1.21280 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99848 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.47165 * 180.02562 * 18 16 15 20 20 C 1.29975 * 118.74865 * 95.00033 * 19 18 16 21 21 C 1.50233 * 122.87077 * 180.41230 * 20 19 18 22 22 O 1.42898 * 110.13236 * 344.39782 * 21 20 19 23 23 C 1.43305 * 113.01999 * 50.18546 * 22 21 20 24 24 C 1.50398 * 118.74108 * 275.00298 * 19 18 16 25 25 C 1.47073 * 118.13738 * 52.70096 * 15 14 12 26 26 C 1.53451 * 107.03293 * 300.01636 * 25 15 14 27 27 C 1.47865 * 125.80475 * 179.97438 * 9 7 2 28 28 H 1.08996 * 106.10679 * 291.37936 * 27 9 7 29 29 H 0.97000 * 119.99992 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.35822 * 38.87697 * 10 9 7 31 31 H 1.09000 * 110.45654 * 276.61544 * 10 9 7 32 32 H 1.09004 * 111.08316 * 278.85453 * 11 10 9 33 33 H 1.09007 * 111.11458 * 154.82010 * 11 10 9 34 34 H 1.08999 * 109.04427 * 88.10286 * 14 12 11 35 35 H 1.09007 * 108.98221 * 329.19447 * 14 12 11 36 36 H 1.09000 * 109.46963 * 60.00348 * 18 16 15 37 37 H 1.08999 * 109.47612 * 300.00553 * 18 16 15 38 38 H 1.08002 * 118.56584 * 0.42953 * 20 19 18 39 39 H 1.09002 * 109.35948 * 224.19563 * 21 20 19 40 40 H 1.09007 * 109.24975 * 104.52925 * 21 20 19 41 41 H 1.08996 * 109.68165 * 51.51395 * 23 22 21 42 42 H 1.09001 * 109.68605 * 172.07669 * 23 22 21 43 43 H 1.08992 * 109.44988 * 43.33466 * 24 19 18 44 44 H 1.09004 * 109.44523 * 283.40995 * 24 19 18 45 45 H 1.08996 * 109.79804 * 60.48716 * 25 15 14 46 46 H 1.08997 * 109.79829 * 181.34845 * 25 15 14 47 47 H 1.09000 * 109.96734 * 292.61628 * 26 25 15 48 48 H 1.09000 * 108.22380 * 173.80917 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1439 -2.5418 0.0007 11 6 -0.3955 -3.9625 -0.5676 12 6 0.7995 -4.7515 0.0512 13 1 1.0390 -5.6282 -0.5506 14 6 0.3968 -5.1596 1.4593 15 7 1.5572 -5.2792 2.3392 16 6 1.7686 -6.3991 3.0587 17 8 0.9901 -7.3259 2.9808 18 6 2.9727 -6.5001 3.9592 19 6 2.9763 -7.8422 4.6446 20 6 3.6659 -8.8107 4.1193 21 6 3.7274 -10.1866 4.7192 22 8 3.2523 -10.1575 6.0665 23 6 1.9855 -9.5008 6.2000 24 6 2.1816 -8.0099 5.9104 25 6 2.4848 -4.1409 2.4223 26 6 3.0330 -3.9036 1.0089 27 6 1.9315 -3.7369 0.0005 28 1 2.4037 -3.8562 -0.9746 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6038 -1.7899 -0.6406 31 1 -0.5349 -2.4644 1.0152 32 1 -0.3444 -3.9639 -1.6565 33 1 -1.3494 -4.3606 -0.2216 34 1 -0.1184 -6.1192 1.4179 35 1 -0.2816 -4.4093 1.8656 36 1 2.9335 -5.7093 4.7083 37 1 3.8805 -6.3934 3.3654 38 1 4.2191 -8.6177 3.2120 39 1 4.7584 -10.5403 4.7071 40 1 3.1064 -10.8629 4.1316 41 1 1.2764 -9.9228 5.4879 42 1 1.6094 -9.6312 7.2147 43 1 1.2091 -7.5317 5.7945 44 1 2.7171 -7.5465 6.7391 45 1 1.9567 -3.2603 2.7879 46 1 3.3081 -4.3839 3.0941 47 1 3.6629 -4.7408 0.7085 48 1 3.6368 -2.9963 1.0253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036812879.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:52 Heat of formation + Delta-G solvation = -53.414679 kcal Electronic energy + Delta-G solvation = -28086.022321 eV Core-core repulsion = 24334.048977 eV Total energy + Delta-G solvation = -3751.973344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58113 -40.40028 -39.48663 -36.58546 -35.70145 -34.60957 -33.24124 -32.02415 -31.39459 -30.30608 -29.05044 -26.86831 -25.92757 -24.96167 -24.35708 -24.04353 -21.93294 -21.02061 -19.58286 -18.99923 -18.47338 -18.03219 -17.46383 -17.30317 -16.95946 -16.64281 -16.27483 -16.12736 -15.87886 -15.61198 -15.07113 -14.85489 -14.52162 -14.34104 -14.14051 -13.92318 -13.78227 -13.62192 -13.31686 -13.26412 -13.01796 -12.88809 -12.87433 -12.63375 -12.54055 -12.23805 -12.18512 -11.92592 -11.66527 -11.60114 -11.51153 -11.42815 -11.22761 -10.88786 -10.69152 -10.60182 -9.77196 -9.60169 -8.80404 -7.73831 -5.14210 1.09537 1.48717 1.49487 1.58888 1.62124 2.10926 2.51898 2.94745 3.37546 3.53720 3.64041 3.69820 3.75874 3.80754 3.92362 3.99514 4.04921 4.20066 4.26074 4.27960 4.40215 4.42543 4.46489 4.54249 4.55471 4.58944 4.61117 4.70828 4.73944 4.79154 4.81453 4.87241 4.93264 4.96682 5.00888 5.08696 5.15126 5.35364 5.40865 5.50746 5.53273 5.57158 5.66465 5.84630 5.87783 6.16931 6.32467 6.47439 7.14866 7.16414 7.82913 8.49712 9.30659 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.024558 B = 0.002912 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.890561 B = 9614.354492 C =10076.156299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.299 1.299 6 H -0.297 1.297 7 C -0.218 4.218 8 H 0.085 0.915 9 N -0.612 5.612 10 C 0.163 3.837 11 C -0.130 4.130 12 C -0.094 4.094 13 H 0.090 0.910 14 C 0.130 3.870 15 N -0.605 5.605 16 C 0.516 3.484 17 O -0.579 6.579 18 C -0.101 4.101 19 C -0.105 4.105 20 C -0.195 4.195 21 C 0.088 3.912 22 O -0.396 6.396 23 C 0.059 3.941 24 C -0.116 4.116 25 C 0.121 3.879 26 C -0.131 4.131 27 C 0.163 3.837 28 H 0.004 0.996 29 H 0.243 0.757 30 H 0.062 0.938 31 H -0.013 1.013 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.114 0.886 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.055 0.945 46 H 0.117 0.883 47 H 0.082 0.918 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.598 -16.864 9.214 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.226 1.226 6 H -0.224 1.224 7 C -0.348 4.348 8 H 0.103 0.897 9 N -0.338 5.338 10 C 0.038 3.962 11 C -0.168 4.168 12 C -0.113 4.113 13 H 0.108 0.892 14 C 0.007 3.993 15 N -0.336 5.336 16 C 0.306 3.694 17 O -0.459 6.459 18 C -0.141 4.141 19 C -0.106 4.106 20 C -0.213 4.213 21 C 0.012 3.988 22 O -0.315 6.315 23 C -0.018 4.018 24 C -0.153 4.153 25 C -0.002 4.002 26 C -0.170 4.170 27 C 0.057 3.943 28 H 0.021 0.979 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.005 0.995 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.073 0.927 46 H 0.135 0.865 47 H 0.100 0.900 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.285 -17.212 9.314 20.882 hybrid contribution -0.282 1.694 -0.651 1.836 sum 7.003 -15.518 8.663 19.102 Atomic orbital electron populations 1.70091 1.06222 1.24618 1.59282 1.25530 0.96453 1.00684 1.03556 0.85078 0.78373 0.80009 0.76321 1.18776 1.22611 1.22410 1.19389 0.91016 0.83266 1.41088 0.89678 1.45123 1.02029 1.00358 1.86261 1.21609 0.84516 0.93748 0.96334 1.23153 0.97529 0.96184 0.99977 1.21821 0.95996 0.97440 0.96071 0.89157 1.21000 0.87705 1.01391 0.89187 1.48048 1.26434 1.15987 1.43163 1.21073 0.87369 0.80778 0.80132 1.90648 1.49096 1.38920 1.67240 1.20865 0.96771 0.97775 0.98642 1.20584 0.98177 0.94823 0.97005 1.22899 1.01533 0.95813 1.01080 1.21562 1.01311 0.93620 0.82338 1.88067 1.37298 1.78471 1.27680 1.22713 0.85109 0.90967 1.02997 1.21041 1.00226 0.98190 0.95872 1.21836 0.92825 0.87735 0.97764 1.21622 0.98093 1.02279 0.95046 1.20043 0.92907 0.84855 0.96478 0.97866 0.94716 0.91950 0.99503 0.91612 0.89992 0.89838 0.93256 0.86396 0.86054 0.85702 0.86104 0.91809 0.93450 0.86790 0.90711 0.88914 0.92676 0.86543 0.89985 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.59 10.16 21.65 0.22 -55.37 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 3 Si 0.97 44.31 29.55 68.60 2.03 46.33 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.22 -11.41 9.67 84.03 0.81 -10.60 16 8 H 0.09 4.21 7.14 -2.91 -0.02 4.19 16 9 N -0.61 -29.29 3.34 -674.14 -2.25 -31.54 16 10 C 0.16 7.77 5.50 86.85 0.48 8.25 16 11 C -0.13 -4.72 6.39 32.34 0.21 -4.52 16 12 C -0.09 -3.11 3.42 -10.37 -0.04 -3.15 16 13 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 14 C 0.13 4.21 5.64 86.14 0.49 4.69 16 15 N -0.60 -17.35 2.92 -822.29 -2.40 -19.75 16 16 C 0.52 14.09 7.70 87.65 0.67 14.77 16 17 O -0.58 -19.67 15.45 -3.03 -0.05 -19.72 16 18 C -0.10 -1.93 4.12 29.10 0.12 -1.81 16 19 C -0.11 -2.15 4.40 -15.52 -0.07 -2.22 16 20 C -0.20 -3.70 9.54 26.56 0.25 -3.45 16 21 C 0.09 1.52 7.04 71.09 0.50 2.03 16 22 O -0.40 -8.26 10.84 -148.98 -1.62 -9.87 16 23 C 0.06 1.09 6.89 72.03 0.50 1.59 16 24 C -0.12 -2.22 6.09 29.80 0.18 -2.04 16 25 C 0.12 3.26 6.48 86.42 0.56 3.82 16 26 C -0.13 -3.98 5.66 29.86 0.17 -3.81 16 27 C 0.16 6.14 2.73 43.55 0.12 6.26 16 28 H 0.00 0.14 8.09 -2.39 -0.02 0.12 16 29 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.06 3.46 6.04 -2.39 -0.01 3.44 16 31 H -0.01 -0.67 7.44 -2.39 -0.02 -0.69 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.34 16 33 H 0.08 2.63 7.94 -2.38 -0.02 2.61 16 34 H 0.08 2.69 6.97 -2.39 -0.02 2.67 16 35 H 0.05 1.78 6.80 -2.38 -0.02 1.76 16 36 H 0.12 1.83 7.84 -2.39 -0.02 1.81 16 37 H 0.12 1.79 7.54 -2.39 -0.02 1.77 16 38 H 0.13 2.05 7.83 -2.91 -0.02 2.03 16 39 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 42 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.12 2.18 5.97 -2.39 -0.01 2.17 16 47 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.07 2.27 6.93 -2.39 -0.02 2.25 16 Total: -1.00 -67.90 366.56 2.30 -65.60 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.94 Total: 17.85 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 5.42 Total: 6.47 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -4.43 Total: -106.66 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -1.66 Total: -29.59 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -67.90 2.30 -65.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036812879.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.188 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds