Wall clock time and date at job start Tue Mar 31 2020 12:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99725 * 2 1 4 4 H 1.48500 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47305 * 299.99540 * 3 2 1 6 6 H 1.48497 * 109.47036 * 60.00129 * 3 2 1 7 7 C 1.38811 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99941 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.47675 * 134.45521 * 180.02562 * 9 7 2 11 11 C 1.53436 * 85.97852 * 204.28802 * 10 9 7 12 12 C 1.47670 * 134.45645 * 359.97438 * 9 7 2 13 13 C 1.52453 * 113.61713 * 222.53989 * 11 10 9 14 14 N 1.47342 * 108.27421 * 180.15275 * 13 11 10 15 15 C 1.34774 * 121.05759 * 228.33199 * 14 13 11 16 16 O 1.21281 * 120.00074 * 359.72249 * 15 14 13 17 17 C 1.50702 * 120.00232 * 179.72505 * 15 14 13 18 18 H 1.09003 * 115.60735 * 34.09020 * 17 15 14 19 19 C 1.52300 * 117.53953 * 180.02562 * 17 15 14 20 20 H 1.09000 * 115.29377 * 0.56934 * 19 17 15 21 21 C 1.52074 * 119.83874 * 217.19558 * 19 17 15 22 22 C 1.52875 * 110.51621 * 310.44517 * 21 19 17 23 23 C 1.53295 * 108.58742 * 305.11127 * 22 21 19 24 24 C 1.52876 * 108.58298 * 74.44418 * 23 22 21 25 25 C 1.52062 * 60.63978 * 107.37638 * 19 17 15 26 26 H 1.09005 * 117.25211 * 253.96507 * 25 19 17 27 27 C 1.47133 * 117.88772 * 48.06531 * 14 13 11 28 28 C 1.53226 * 108.73258 * 308.05105 * 27 14 13 29 29 O 1.42492 * 113.81633 * 91.23660 * 11 10 9 30 30 H 0.97002 * 120.00227 * 0.02562 * 1 2 3 31 31 H 1.09002 * 113.79168 * 90.02358 * 10 9 7 32 32 H 1.08999 * 113.79163 * 318.55696 * 10 9 7 33 33 H 1.09005 * 113.78994 * 41.45498 * 12 9 7 34 34 H 1.08998 * 113.79651 * 269.98227 * 12 9 7 35 35 H 1.08998 * 109.69017 * 60.41551 * 13 11 10 36 36 H 1.08999 * 109.57497 * 299.82799 * 13 11 10 37 37 H 1.08996 * 109.27049 * 190.17594 * 21 19 17 38 38 H 1.09004 * 109.26895 * 70.71624 * 21 19 17 39 39 H 1.08997 * 109.61744 * 185.38038 * 22 21 19 40 40 H 1.09002 * 109.61288 * 64.84289 * 22 21 19 41 41 H 1.08995 * 109.62125 * 314.70967 * 23 22 21 42 42 H 1.09006 * 109.76985 * 194.25725 * 23 22 21 43 43 H 1.09000 * 109.35999 * 65.68059 * 24 23 22 44 44 H 1.09002 * 109.36163 * 185.27209 * 24 23 22 45 45 H 1.09001 * 109.59652 * 67.82358 * 27 14 13 46 46 H 1.09001 * 109.59054 * 188.27690 * 27 14 13 47 47 H 1.09000 * 109.48829 * 174.07889 * 28 27 14 48 48 H 1.09002 * 109.49092 * 294.15484 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.7213 -3.8108 0.0015 11 6 0.3489 -4.0813 -0.6290 12 6 -0.1044 -2.7567 0.0005 13 6 -0.3605 -5.2994 -0.0485 14 7 -1.6551 -5.4512 -0.7356 15 6 -2.7935 -5.6416 -0.0397 16 8 -2.7620 -5.6954 1.1715 17 6 -4.1055 -5.7877 -0.7666 18 1 -4.0557 -6.2913 -1.7320 19 6 -5.3569 -6.0001 0.0750 20 1 -5.1956 -6.0192 1.1529 21 6 -6.4515 -6.9332 -0.4187 22 6 -6.8236 -6.6048 -1.8647 23 6 -7.2014 -5.1214 -1.9471 24 6 -5.9230 -4.2875 -1.8615 25 6 -5.1357 -4.6590 -0.6067 26 1 -4.8396 -3.8210 0.0244 27 6 -1.6664 -5.3822 -2.2053 28 6 -0.9460 -4.1028 -2.6434 29 8 0.3574 -4.0671 -2.0539 30 1 -0.4850 0.8400 -0.0004 31 1 1.8380 -4.2341 0.9992 32 1 2.5600 -4.0344 -0.6579 33 1 -0.7168 -2.1426 -0.6598 34 1 -0.5302 -2.8668 0.9979 35 1 -0.5251 -5.1544 1.0192 36 1 0.2488 -6.1886 -0.2105 37 1 -7.3322 -6.8210 0.2136 38 1 -6.0984 -7.9630 -0.3632 39 1 -7.6719 -7.2162 -2.1722 40 1 -5.9718 -6.8022 -2.5156 41 1 -7.8617 -4.8653 -1.1186 42 1 -7.7061 -4.9215 -2.8924 43 1 -5.3090 -4.4759 -2.7421 44 1 -6.1834 -3.2297 -1.8245 45 1 -1.1514 -6.2506 -2.6160 46 1 -2.6961 -5.3625 -2.5623 47 1 -0.8545 -4.0908 -3.7295 48 1 -1.5170 -3.2338 -2.3165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053203426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:19 Heat of formation + Delta-G solvation = 3.300595 kcal Electronic energy + Delta-G solvation = -28474.888816 eV Core-core repulsion = 24725.374831 eV Total energy + Delta-G solvation = -3749.513985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.76759 -39.65148 -38.07041 -36.18830 -34.37866 -33.30007 -32.23109 -30.99576 -30.00829 -28.04330 -26.60637 -25.08415 -24.92604 -23.28229 -22.76314 -22.51229 -21.30088 -19.34041 -18.75167 -18.26638 -17.53118 -16.78536 -16.18012 -15.84419 -15.41687 -15.11621 -14.78108 -14.39672 -14.36739 -14.19459 -14.11551 -13.95973 -13.63222 -13.27958 -13.17803 -12.62256 -12.50557 -12.46149 -12.31158 -12.00071 -11.86088 -11.34977 -11.30631 -11.11402 -11.07939 -10.87098 -10.78869 -10.63016 -10.50740 -10.22171 -10.07066 -9.89406 -9.87766 -9.58384 -9.45699 -9.20925 -8.81081 -8.19985 -6.85578 -5.73115 -3.05286 2.57216 2.97008 3.41344 3.46246 3.49028 3.70225 4.07455 4.31384 4.46744 4.50756 4.53583 4.72049 4.77078 4.87722 4.95377 5.01319 5.11029 5.13948 5.16851 5.28119 5.31342 5.34343 5.37549 5.43141 5.47124 5.58120 5.69718 5.71801 5.75644 5.80038 5.85550 5.88484 6.00856 6.02824 6.04710 6.10747 6.11346 6.21790 6.31864 6.48511 6.51375 6.61318 7.03094 7.21490 7.50654 7.52633 7.83806 8.00272 8.30782 9.06881 9.73596 10.60233 11.44056 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.003459 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.649298 B = 8092.215927 C = 8710.655785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.082 0.918 9 N -0.603 5.603 10 C 0.136 3.864 11 C 0.049 3.951 12 C 0.152 3.848 13 C 0.100 3.900 14 N -0.606 5.606 15 C 0.546 3.454 16 O -0.542 6.542 17 C -0.193 4.193 18 H 0.122 0.878 19 C -0.106 4.106 20 H 0.113 0.887 21 C -0.088 4.088 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.091 4.091 25 C -0.113 4.113 26 H 0.109 0.891 27 C 0.075 3.925 28 C 0.047 3.953 29 O -0.342 6.342 30 H 0.252 0.748 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.671 -15.092 -6.750 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.010 3.990 11 C 0.008 3.992 12 C 0.026 3.974 13 C -0.023 4.023 14 N -0.339 5.339 15 C 0.335 3.665 16 O -0.420 6.420 17 C -0.214 4.214 18 H 0.139 0.861 19 C -0.125 4.125 20 H 0.131 0.869 21 C -0.125 4.125 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.128 4.128 25 C -0.131 4.131 26 H 0.128 0.872 27 C -0.048 4.048 28 C -0.031 4.031 29 O -0.260 6.260 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.118 0.882 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.410 -14.753 -6.211 20.882 hybrid contribution 0.379 0.931 0.119 1.012 sum -13.032 -13.822 -6.092 19.950 Atomic orbital electron populations 1.69831 1.05045 1.25102 1.56990 1.24768 0.95663 0.97490 1.02561 0.86034 0.78750 0.83720 0.77201 1.20436 1.21737 1.21799 1.19052 0.90293 0.81773 1.43390 0.90068 1.45795 1.01977 0.99132 1.86035 1.22487 0.93268 0.86757 0.96524 1.23596 0.99118 0.94644 0.81876 1.22683 0.88604 0.89006 0.97084 1.22160 0.82802 0.98394 0.98978 1.48034 1.07300 1.71682 1.06867 1.19653 0.84164 0.75661 0.87062 1.90676 1.86354 1.51063 1.13888 1.22461 0.89108 1.07741 1.02095 0.86069 1.21894 0.94358 0.96909 0.99334 0.86914 1.20878 0.97109 0.98298 0.96250 1.21634 1.01179 0.96547 0.96723 1.21570 0.97293 0.94898 1.01890 1.21091 0.95922 1.00271 0.95564 1.22374 0.98393 0.92425 0.99950 0.87245 1.22447 1.02257 0.99813 0.80284 1.22863 0.85803 0.96022 0.98378 1.87924 1.25778 1.94299 1.17977 0.93797 0.93255 0.92592 0.90618 0.94971 0.88100 0.91421 0.91020 0.91406 0.91743 0.91878 0.91550 0.91805 0.91372 0.90964 0.90856 0.89097 0.88220 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.02 11.39 55.49 0.63 -27.38 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 8 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 9 N -0.60 -16.09 3.70 -180.31 -0.67 -16.76 16 10 C 0.14 2.90 8.33 -3.18 -0.03 2.87 16 11 C 0.05 0.98 1.21 -90.51 -0.11 0.87 16 12 C 0.15 3.75 6.64 -3.15 -0.02 3.73 16 13 C 0.10 1.69 5.75 -3.86 -0.02 1.67 16 14 N -0.61 -9.25 3.03 -172.69 -0.52 -9.78 16 15 C 0.55 8.61 7.50 -10.99 -0.08 8.53 16 16 O -0.54 -10.50 15.66 5.56 0.09 -10.41 16 17 C -0.19 -2.26 4.10 -91.79 -0.38 -2.64 16 18 H 0.12 1.16 5.99 -51.93 -0.31 0.85 16 19 C -0.11 -1.16 5.59 -91.93 -0.51 -1.67 16 20 H 0.11 1.45 7.51 -51.93 -0.39 1.06 16 21 C -0.09 -0.72 5.93 -27.27 -0.16 -0.88 16 22 C -0.12 -0.87 5.70 -26.64 -0.15 -1.02 16 23 C -0.12 -0.87 5.93 -26.64 -0.16 -1.03 16 24 C -0.09 -0.80 5.83 -26.94 -0.16 -0.95 16 25 C -0.11 -1.25 5.90 -90.91 -0.54 -1.79 16 26 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 27 C 0.08 0.92 6.45 -3.58 -0.02 0.90 16 28 C 0.05 0.71 6.88 37.27 0.26 0.96 16 29 O -0.34 -6.66 10.52 -35.23 -0.37 -7.03 16 30 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 2.07 6.31 -51.93 -0.33 1.74 16 34 H 0.03 0.84 7.92 -51.93 -0.41 0.43 16 35 H 0.10 1.87 6.89 -51.93 -0.36 1.51 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.44 7.11 -51.93 -0.37 0.07 16 41 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.55 8.06 -51.93 -0.42 0.14 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 0.87 5.77 -51.93 -0.30 0.57 16 47 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.06 1.04 7.19 -51.93 -0.37 0.67 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -34.41 369.57 -10.51 -44.92 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.87 Total: 0.48 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -2.34 Total: 2.76 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.56 Total: -53.92 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.28 Total: -17.44 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.41 -10.51 -44.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053203426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.221 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds