Wall clock time and date at job start Tue Mar 31 2020 12:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99725 * 2 1 4 4 H 1.48500 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47305 * 299.99540 * 3 2 1 6 6 H 1.48497 * 109.47036 * 60.00129 * 3 2 1 7 7 C 1.38811 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99941 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.47675 * 134.45521 * 180.02562 * 9 7 2 11 11 C 1.53436 * 85.97852 * 204.28802 * 10 9 7 12 12 C 1.47670 * 134.45645 * 359.97438 * 9 7 2 13 13 C 1.52453 * 113.61713 * 222.53989 * 11 10 9 14 14 N 1.47342 * 108.27421 * 180.15275 * 13 11 10 15 15 C 1.34774 * 121.05759 * 228.33199 * 14 13 11 16 16 O 1.21281 * 120.00074 * 359.72249 * 15 14 13 17 17 C 1.50702 * 120.00232 * 179.72505 * 15 14 13 18 18 H 1.09003 * 115.60735 * 34.09020 * 17 15 14 19 19 C 1.52300 * 117.53953 * 180.02562 * 17 15 14 20 20 H 1.09000 * 115.29377 * 0.56934 * 19 17 15 21 21 C 1.52074 * 119.83874 * 217.19558 * 19 17 15 22 22 C 1.52875 * 110.51621 * 310.44517 * 21 19 17 23 23 C 1.53295 * 108.58742 * 305.11127 * 22 21 19 24 24 C 1.52876 * 108.58298 * 74.44418 * 23 22 21 25 25 C 1.52062 * 60.63978 * 107.37638 * 19 17 15 26 26 H 1.09005 * 117.25211 * 253.96507 * 25 19 17 27 27 C 1.47133 * 117.88772 * 48.06531 * 14 13 11 28 28 C 1.53226 * 108.73258 * 308.05105 * 27 14 13 29 29 O 1.42492 * 113.81633 * 91.23660 * 11 10 9 30 30 H 0.97002 * 120.00227 * 0.02562 * 1 2 3 31 31 H 1.09002 * 113.79168 * 90.02358 * 10 9 7 32 32 H 1.08999 * 113.79163 * 318.55696 * 10 9 7 33 33 H 1.09005 * 113.78994 * 41.45498 * 12 9 7 34 34 H 1.08998 * 113.79651 * 269.98227 * 12 9 7 35 35 H 1.08998 * 109.69017 * 60.41551 * 13 11 10 36 36 H 1.08999 * 109.57497 * 299.82799 * 13 11 10 37 37 H 1.08996 * 109.27049 * 190.17594 * 21 19 17 38 38 H 1.09004 * 109.26895 * 70.71624 * 21 19 17 39 39 H 1.08997 * 109.61744 * 185.38038 * 22 21 19 40 40 H 1.09002 * 109.61288 * 64.84289 * 22 21 19 41 41 H 1.08995 * 109.62125 * 314.70967 * 23 22 21 42 42 H 1.09006 * 109.76985 * 194.25725 * 23 22 21 43 43 H 1.09000 * 109.35999 * 65.68059 * 24 23 22 44 44 H 1.09002 * 109.36163 * 185.27209 * 24 23 22 45 45 H 1.09001 * 109.59652 * 67.82358 * 27 14 13 46 46 H 1.09001 * 109.59054 * 188.27690 * 27 14 13 47 47 H 1.09000 * 109.48829 * 174.07889 * 28 27 14 48 48 H 1.09002 * 109.49092 * 294.15484 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.7213 -3.8108 0.0015 11 6 0.3489 -4.0813 -0.6290 12 6 -0.1044 -2.7567 0.0005 13 6 -0.3605 -5.2994 -0.0485 14 7 -1.6551 -5.4512 -0.7356 15 6 -2.7935 -5.6416 -0.0397 16 8 -2.7620 -5.6954 1.1715 17 6 -4.1055 -5.7877 -0.7666 18 1 -4.0557 -6.2913 -1.7320 19 6 -5.3569 -6.0001 0.0750 20 1 -5.1956 -6.0192 1.1529 21 6 -6.4515 -6.9332 -0.4187 22 6 -6.8236 -6.6048 -1.8647 23 6 -7.2014 -5.1214 -1.9471 24 6 -5.9230 -4.2875 -1.8615 25 6 -5.1357 -4.6590 -0.6067 26 1 -4.8396 -3.8210 0.0244 27 6 -1.6664 -5.3822 -2.2053 28 6 -0.9460 -4.1028 -2.6434 29 8 0.3574 -4.0671 -2.0539 30 1 -0.4850 0.8400 -0.0004 31 1 1.8380 -4.2341 0.9992 32 1 2.5600 -4.0344 -0.6579 33 1 -0.7168 -2.1426 -0.6598 34 1 -0.5302 -2.8668 0.9979 35 1 -0.5251 -5.1544 1.0192 36 1 0.2488 -6.1886 -0.2105 37 1 -7.3322 -6.8210 0.2136 38 1 -6.0984 -7.9630 -0.3632 39 1 -7.6719 -7.2162 -2.1722 40 1 -5.9718 -6.8022 -2.5156 41 1 -7.8617 -4.8653 -1.1186 42 1 -7.7061 -4.9215 -2.8924 43 1 -5.3090 -4.4759 -2.7421 44 1 -6.1834 -3.2297 -1.8245 45 1 -1.1514 -6.2506 -2.6160 46 1 -2.6961 -5.3625 -2.5623 47 1 -0.8545 -4.0908 -3.7295 48 1 -1.5170 -3.2338 -2.3165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053203426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:18 Heat of formation + Delta-G solvation = -18.849194 kcal Electronic energy + Delta-G solvation = -28475.849303 eV Core-core repulsion = 24725.374831 eV Total energy + Delta-G solvation = -3750.474472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.97496 -40.93910 -39.28359 -37.78247 -35.76772 -34.36126 -33.99916 -31.68079 -31.55018 -29.50420 -28.29761 -26.91429 -25.99231 -24.69082 -23.83926 -23.41077 -22.67226 -20.69900 -20.03851 -19.14352 -18.84775 -18.63655 -17.59049 -17.17909 -16.94846 -16.50470 -16.13893 -15.79276 -15.73779 -15.26123 -15.07071 -14.95576 -14.83657 -14.77573 -14.53673 -14.18548 -13.94304 -13.40900 -13.26520 -13.19653 -13.03962 -12.90139 -12.81693 -12.71707 -12.52003 -12.11407 -11.96496 -11.94473 -11.76998 -11.70584 -11.50204 -11.16677 -11.01921 -10.96526 -10.83519 -10.68969 -10.59559 -9.56755 -8.98615 -7.94150 -5.29081 1.38326 1.41841 1.44021 1.54348 1.79429 2.42968 2.61861 2.76662 3.22711 3.30329 3.36598 3.59736 3.69973 3.71771 3.73783 3.87420 4.01865 4.05134 4.10266 4.21574 4.28679 4.36325 4.39048 4.45332 4.58022 4.59884 4.63985 4.65996 4.69896 4.77656 4.83462 4.86999 4.92737 4.95526 5.07770 5.08476 5.13071 5.19034 5.27421 5.30828 5.35173 5.37277 5.42406 5.46576 5.56203 5.84793 6.28347 6.33624 6.85027 7.07240 7.54933 8.47989 9.22747 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.003459 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.649298 B = 8092.215927 C = 8710.655785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.070 4.070 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.088 0.912 9 N -0.634 5.634 10 C 0.134 3.866 11 C 0.080 3.920 12 C 0.152 3.848 13 C 0.107 3.893 14 N -0.609 5.609 15 C 0.536 3.464 16 O -0.589 6.589 17 C -0.189 4.189 18 H 0.156 0.844 19 C -0.102 4.102 20 H 0.083 0.917 21 C -0.084 4.084 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.088 4.088 25 C -0.114 4.114 26 H 0.074 0.926 27 C 0.080 3.920 28 C 0.040 3.960 29 O -0.361 6.361 30 H 0.247 0.753 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.005 0.995 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.124 0.876 47 H 0.136 0.864 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 -17.114 -9.284 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.262 4.262 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.361 4.361 8 H 0.106 0.894 9 N -0.360 5.360 10 C 0.009 3.991 11 C 0.038 3.962 12 C 0.026 3.974 13 C -0.017 4.017 14 N -0.341 5.341 15 C 0.327 3.673 16 O -0.470 6.470 17 C -0.209 4.209 18 H 0.173 0.827 19 C -0.121 4.121 20 H 0.102 0.898 21 C -0.121 4.121 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.126 4.126 25 C -0.133 4.133 26 H 0.093 0.907 27 C -0.041 4.041 28 C -0.037 4.037 29 O -0.279 6.279 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.023 0.977 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.122 0.878 46 H 0.142 0.858 47 H 0.154 0.846 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -13.779 -16.811 -8.778 23.442 hybrid contribution 0.508 1.579 0.939 1.906 sum -13.271 -15.232 -7.839 21.670 Atomic orbital electron populations 1.70048 1.06686 1.25480 1.58409 1.25693 0.96578 1.01107 1.02856 0.84938 0.78264 0.78967 0.76722 1.18626 1.21640 1.22015 1.19499 0.90951 0.83127 1.42536 0.89440 1.46193 1.02977 1.00704 1.86160 1.22715 0.94590 0.83851 0.97924 1.23069 0.97632 0.93109 0.82420 1.22508 0.87606 0.91848 0.95436 1.21923 0.84085 0.97940 0.97721 1.48187 1.06500 1.71105 1.08347 1.20425 0.85470 0.74621 0.86792 1.90651 1.87089 1.53129 1.16133 1.22509 0.86937 1.08427 1.03067 0.82691 1.21929 0.94930 0.97346 0.97855 0.89836 1.20908 0.96048 0.97732 0.97428 1.21643 1.02181 0.96293 0.95566 1.21570 0.96263 0.94960 1.02593 1.21125 0.96647 1.00390 0.94391 1.22371 0.98670 0.91474 1.00809 0.90724 1.22660 1.04287 0.99113 0.78074 1.23173 0.83904 0.96522 1.00095 1.87881 1.28553 1.94377 1.17117 0.94391 0.91279 0.91282 0.94132 0.97716 0.90309 0.88288 0.90450 0.90580 0.89955 0.91121 0.92074 0.90131 0.89907 0.91479 0.87800 0.85818 0.84640 0.95141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.71 11.39 21.65 0.25 -60.46 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.23 -13.76 10.70 84.03 0.90 -12.86 16 8 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 9 N -0.63 -34.79 3.70 -729.25 -2.70 -37.49 16 10 C 0.13 5.71 8.33 86.30 0.72 6.43 16 11 C 0.08 3.19 1.21 -10.63 -0.01 3.18 16 12 C 0.15 7.93 6.64 86.32 0.57 8.51 16 13 C 0.11 3.60 5.75 86.04 0.49 4.09 16 14 N -0.61 -18.01 3.03 -818.66 -2.48 -20.49 16 15 C 0.54 16.98 7.50 87.66 0.66 17.64 16 16 O -0.59 -23.92 15.66 -3.03 -0.05 -23.97 16 17 C -0.19 -4.17 4.10 -11.55 -0.05 -4.22 16 18 H 0.16 2.34 5.99 -2.39 -0.01 2.32 16 19 C -0.10 -2.18 5.59 -11.64 -0.07 -2.24 16 20 H 0.08 2.28 7.51 -2.39 -0.02 2.26 16 21 C -0.08 -1.17 5.93 30.25 0.18 -0.99 16 22 C -0.12 -1.23 5.70 30.65 0.17 -1.06 16 23 C -0.12 -1.37 5.93 30.65 0.18 -1.19 16 24 C -0.09 -1.39 5.83 30.46 0.18 -1.21 16 25 C -0.11 -2.55 5.90 -10.98 -0.06 -2.61 16 26 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 27 C 0.08 1.71 6.45 86.33 0.56 2.26 16 28 C 0.04 1.13 6.88 72.06 0.50 1.63 16 29 O -0.36 -13.73 10.52 -148.98 -1.57 -15.29 16 30 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 32 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.04 2.37 6.31 -2.38 -0.02 2.36 16 34 H 0.01 0.29 7.92 -2.39 -0.02 0.27 16 35 H 0.08 3.02 6.89 -2.39 -0.02 3.01 16 36 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.66 7.11 -2.39 -0.02 0.64 16 41 H 0.06 0.79 8.04 -2.39 -0.02 0.78 16 42 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.08 1.08 8.06 -2.39 -0.02 1.06 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.12 1.83 5.77 -2.39 -0.01 1.82 16 47 H 0.14 2.86 8.14 -2.39 -0.02 2.85 16 48 H 0.03 1.05 7.19 -2.39 -0.02 1.04 16 Total: -1.00 -80.04 369.57 1.81 -78.24 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.94 Total: 16.31 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 5.39 Total: 13.63 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -4.94 Total: -118.45 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.61 Total: -39.26 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -80.04 1.81 -78.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053203426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.386 kcal (2) G-P(sol) polarization free energy of solvation -80.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds