Wall clock time and date at job start Tue Mar 31 2020 12:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00148 * 2 1 4 4 H 1.48495 * 109.47298 * 270.00093 * 3 2 1 5 5 H 1.48506 * 109.47007 * 30.00156 * 3 2 1 6 6 H 1.48498 * 109.47093 * 149.99785 * 3 2 1 7 7 C 1.38811 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00156 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.47667 * 134.45401 * 180.02562 * 9 7 2 11 11 C 1.53463 * 86.09766 * 155.74269 * 10 9 7 12 12 C 1.47915 * 134.54725 * 359.90364 * 9 7 2 13 13 C 1.52895 * 113.51725 * 137.61625 * 11 10 9 14 14 N 1.47341 * 108.04979 * 83.02473 * 13 11 10 15 15 C 1.34767 * 121.05040 * 228.42011 * 14 13 11 16 16 O 1.21287 * 119.99826 * 355.81358 * 15 14 13 17 17 C 1.50696 * 120.00106 * 175.81359 * 15 14 13 18 18 C 1.52304 * 115.91568 * 281.06519 * 17 15 14 19 19 C 1.52072 * 115.93059 * 212.77280 * 17 15 14 20 20 H 1.08995 * 117.25532 * 359.37113 * 19 17 15 21 21 C 1.52710 * 120.52548 * 210.74008 * 19 17 15 22 22 C 1.52880 * 110.15071 * 21.46965 * 21 19 17 23 23 C 1.53293 * 108.58355 * 305.48218 * 22 21 19 24 24 C 1.52075 * 114.63673 * 66.15959 * 17 15 14 25 25 C 1.47126 * 117.89842 * 48.40251 * 14 13 11 26 26 C 1.53229 * 108.71219 * 307.77358 * 25 14 13 27 27 O 1.42492 * 113.77244 * 268.66061 * 11 10 9 28 28 H 0.97003 * 119.99616 * 0.02562 * 1 2 3 29 29 H 1.09001 * 113.79391 * 41.42473 * 10 9 7 30 30 H 1.09000 * 113.79496 * 270.05926 * 10 9 7 31 31 H 1.09000 * 113.68711 * 89.99337 * 12 9 7 32 32 H 1.08998 * 113.96747 * 318.56800 * 12 9 7 33 33 H 1.08995 * 109.74618 * 202.66910 * 13 11 10 34 34 H 1.09001 * 109.74133 * 323.38592 * 13 11 10 35 35 H 1.08997 * 117.53622 * 0.84977 * 18 17 15 36 36 H 1.09000 * 117.53889 * 146.09923 * 18 17 15 37 37 H 1.08996 * 109.35927 * 141.68479 * 21 19 17 38 38 H 1.09003 * 109.35377 * 261.40805 * 21 19 17 39 39 H 1.09006 * 109.61427 * 65.20990 * 22 21 19 40 40 H 1.09006 * 109.61805 * 185.74979 * 22 21 19 41 41 H 1.09007 * 109.61133 * 194.17053 * 23 22 21 42 42 H 1.08993 * 109.61896 * 314.52574 * 23 22 21 43 43 H 1.08992 * 109.26729 * 285.89529 * 24 17 15 44 44 H 1.08998 * 109.26862 * 45.35846 * 24 17 15 45 45 H 1.08998 * 109.59915 * 67.54706 * 25 14 13 46 46 H 1.09003 * 109.59183 * 187.85151 * 25 14 13 47 47 H 1.09006 * 109.48558 * 174.09380 * 26 25 14 48 48 H 1.09001 * 109.48936 * 294.13796 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 1.7213 -3.8107 -0.0019 11 6 0.3480 -4.0845 0.6259 12 6 -0.1062 -2.7596 -0.0006 13 6 -0.3564 -5.3096 0.0422 14 7 0.1656 -6.5055 0.7265 15 6 0.5717 -7.5843 0.0282 16 8 0.4402 -7.6110 -1.1772 17 6 1.1889 -8.7573 0.7450 18 6 2.6496 -8.5986 1.1462 19 6 2.2597 -9.5170 -0.0223 20 1 2.4941 -9.1696 -1.0284 21 6 2.4624 -11.0135 0.2050 22 6 1.1982 -11.6314 0.8026 23 6 0.8260 -10.8531 2.0697 24 6 0.2416 -9.5046 1.6707 25 6 0.2300 -6.4846 2.1962 26 6 0.9767 -5.2215 2.6377 27 8 0.3554 -4.0738 2.0508 28 1 -0.4850 0.8401 -0.0004 29 1 2.5592 -4.0343 0.6585 30 1 1.8410 -4.2337 -0.9994 31 1 -0.5311 -2.8680 -0.9985 32 1 -0.7216 -2.1490 0.6600 33 1 -1.4308 -5.2302 0.2075 34 1 -0.1516 -5.3778 -1.0262 35 1 3.1390 -7.6553 0.9042 36 1 2.9718 -9.0722 2.0736 37 1 2.6857 -11.4964 -0.7463 38 1 3.2954 -11.1650 0.8915 39 1 0.3834 -11.5675 0.0813 40 1 1.3853 -12.6750 1.0557 41 1 0.0912 -11.4179 2.6435 42 1 1.7178 -10.6920 2.6754 43 1 0.0714 -8.9094 2.5678 44 1 -0.7082 -9.6646 1.1604 45 1 -0.7798 -6.4745 2.6063 46 1 0.7600 -7.3684 2.5515 47 1 0.9409 -5.1389 3.7240 48 1 2.0151 -5.2802 2.3114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053420869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:54 Heat of formation + Delta-G solvation = 9.209922 kcal Electronic energy + Delta-G solvation = -28671.323331 eV Core-core repulsion = 24922.065594 eV Total energy + Delta-G solvation = -3749.257737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11061 -39.63567 -37.96904 -36.23089 -34.47093 -33.41925 -32.24582 -31.31438 -29.95684 -27.95942 -26.34865 -25.16743 -24.99527 -23.67137 -23.25471 -21.79405 -21.55028 -19.88845 -18.82119 -18.41240 -17.26258 -16.79403 -16.32860 -15.83160 -15.54751 -15.01690 -14.82219 -14.53947 -14.38649 -14.23221 -14.12742 -13.97340 -13.70376 -13.37689 -13.25092 -12.83888 -12.58040 -12.41097 -12.33703 -12.11675 -11.75938 -11.37820 -11.22189 -11.16875 -11.12972 -10.83654 -10.81811 -10.80062 -10.73746 -10.24281 -10.16031 -10.03583 -9.85322 -9.63463 -9.46001 -9.26611 -8.80776 -8.27742 -6.86204 -5.73520 -3.05291 2.59812 2.86604 3.42004 3.44529 3.46273 3.48634 4.07095 4.20313 4.39028 4.43329 4.46532 4.51348 4.71780 4.85148 4.89327 4.94394 5.00773 5.09906 5.15598 5.18481 5.25045 5.26751 5.33858 5.40865 5.48788 5.52729 5.58464 5.63396 5.71780 5.77241 5.80031 5.80653 5.83823 5.89103 5.94491 6.00676 6.06528 6.11360 6.31008 6.39063 6.50131 6.61325 6.97120 7.19917 7.42693 7.51827 7.83043 8.00253 8.20177 9.06447 9.73302 10.59821 11.44108 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.029125 B = 0.003073 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.127422 B = 9108.930063 C = 9254.553359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.102 3.898 11 C 0.054 3.946 12 C 0.182 3.818 13 C 0.098 3.902 14 N -0.604 5.604 15 C 0.547 3.453 16 O -0.538 6.538 17 C -0.137 4.137 18 C -0.165 4.165 19 C -0.114 4.114 20 H 0.111 0.889 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.082 4.082 25 C 0.070 3.930 26 C 0.045 3.955 27 O -0.335 6.335 28 H 0.254 0.746 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 -23.632 6.732 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.328 5.328 10 C -0.024 4.024 11 C 0.012 3.988 12 C 0.057 3.943 13 C -0.025 4.025 14 N -0.338 5.338 15 C 0.335 3.665 16 O -0.415 6.415 17 C -0.140 4.140 18 C -0.202 4.202 19 C -0.132 4.132 20 H 0.129 0.871 21 C -0.126 4.126 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.119 4.119 25 C -0.053 4.053 26 C -0.033 4.033 27 O -0.253 6.253 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.089 -23.107 6.199 23.949 hybrid contribution 0.560 0.820 -0.183 1.010 sum 1.650 -22.287 6.016 23.144 Atomic orbital electron populations 1.69799 1.04986 1.25364 1.56622 1.24762 0.95687 0.97456 1.02422 0.86108 0.78606 0.83442 0.77520 1.21648 1.21591 1.20672 1.18968 0.90165 0.81765 1.43870 0.90291 1.45783 1.01844 0.99058 1.86112 1.23023 0.95019 0.87279 0.97092 1.23745 0.97814 0.95663 0.81608 1.22237 0.88921 0.86623 0.96563 1.22314 0.98362 0.82976 0.98805 1.48131 1.63335 1.15358 1.06932 1.19669 0.77498 0.82432 0.86904 1.90690 1.55858 1.80640 1.14265 1.20951 0.91972 0.98098 1.03017 1.23303 0.94634 1.02333 0.99935 1.22235 0.99866 0.93913 0.97235 0.87068 1.21077 0.97851 0.92352 1.01272 1.21579 0.98157 0.98730 0.97366 1.21492 1.01089 0.95400 0.97687 1.20837 0.97535 0.95712 0.97854 1.22602 1.02093 1.00328 0.80288 1.22880 0.96302 0.85457 0.98685 1.88051 1.78747 1.40435 1.18053 0.93602 0.93889 0.94261 0.93817 0.89674 0.90847 0.88147 0.88389 0.87718 0.91294 0.91360 0.91506 0.91748 0.91347 0.91636 0.90646 0.91155 0.90641 0.88533 0.88153 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.71 11.41 55.49 0.63 -27.08 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -16.01 3.71 -179.21 -0.67 -16.67 16 10 C 0.10 2.23 8.07 -3.17 -0.03 2.20 16 11 C 0.05 1.06 1.21 -90.29 -0.11 0.95 16 12 C 0.18 4.40 6.90 -3.05 -0.02 4.38 16 13 C 0.10 1.65 5.76 -3.64 -0.02 1.63 16 14 N -0.60 -8.66 3.03 -172.43 -0.52 -9.19 16 15 C 0.55 8.07 6.82 -10.99 -0.07 7.99 16 16 O -0.54 -9.96 16.08 5.55 0.09 -9.87 16 17 C -0.14 -1.47 1.31 -156.96 -0.21 -1.68 16 18 C -0.16 -1.54 8.83 -26.74 -0.24 -1.78 16 19 C -0.11 -1.16 5.64 -90.90 -0.51 -1.68 16 20 H 0.11 1.35 7.88 -51.93 -0.41 0.94 16 21 C -0.09 -0.68 5.83 -26.94 -0.16 -0.83 16 22 C -0.12 -0.85 5.93 -26.64 -0.16 -1.01 16 23 C -0.12 -0.79 5.67 -26.94 -0.15 -0.94 16 24 C -0.08 -0.69 5.00 -27.56 -0.14 -0.83 16 25 C 0.07 0.80 5.83 -3.58 -0.02 0.78 16 26 C 0.04 0.61 6.88 37.28 0.26 0.87 16 27 O -0.34 -6.47 10.52 -35.23 -0.37 -6.84 16 28 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.04 0.91 7.28 -51.93 -0.38 0.53 16 30 H 0.04 0.85 7.94 -51.93 -0.41 0.44 16 31 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 32 H 0.09 2.29 7.20 -51.93 -0.37 1.91 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.81 6.94 -51.93 -0.36 1.45 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 0.76 7.27 -51.93 -0.38 0.39 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.45 8.06 -51.93 -0.42 0.03 16 39 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.40 7.12 -51.93 -0.37 0.03 16 43 H 0.08 0.55 5.85 -51.93 -0.30 0.24 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 0.85 4.28 -51.93 -0.22 0.63 16 47 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.05 0.75 7.20 -51.93 -0.37 0.38 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -34.04 365.95 -9.94 -43.99 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.76 Total: -0.64 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.83 Total: 3.24 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.55 Total: -52.94 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.28 Total: -16.71 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.04 -9.94 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053420869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.195 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds