Wall clock time and date at job start Tue Mar 31 2020 12:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00148 * 2 1 4 4 H 1.48495 * 109.47298 * 270.00093 * 3 2 1 5 5 H 1.48506 * 109.47007 * 30.00156 * 3 2 1 6 6 H 1.48498 * 109.47093 * 149.99785 * 3 2 1 7 7 C 1.38811 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00156 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.47667 * 134.45401 * 180.02562 * 9 7 2 11 11 C 1.53463 * 86.09766 * 155.74269 * 10 9 7 12 12 C 1.47915 * 134.54725 * 359.90364 * 9 7 2 13 13 C 1.52895 * 113.51725 * 137.61625 * 11 10 9 14 14 N 1.47341 * 108.04979 * 83.02473 * 13 11 10 15 15 C 1.34767 * 121.05040 * 228.42011 * 14 13 11 16 16 O 1.21287 * 119.99826 * 355.81358 * 15 14 13 17 17 C 1.50696 * 120.00106 * 175.81359 * 15 14 13 18 18 C 1.52304 * 115.91568 * 281.06519 * 17 15 14 19 19 C 1.52072 * 115.93059 * 212.77280 * 17 15 14 20 20 H 1.08995 * 117.25532 * 359.37113 * 19 17 15 21 21 C 1.52710 * 120.52548 * 210.74008 * 19 17 15 22 22 C 1.52880 * 110.15071 * 21.46965 * 21 19 17 23 23 C 1.53293 * 108.58355 * 305.48218 * 22 21 19 24 24 C 1.52075 * 114.63673 * 66.15959 * 17 15 14 25 25 C 1.47126 * 117.89842 * 48.40251 * 14 13 11 26 26 C 1.53229 * 108.71219 * 307.77358 * 25 14 13 27 27 O 1.42492 * 113.77244 * 268.66061 * 11 10 9 28 28 H 0.97003 * 119.99616 * 0.02562 * 1 2 3 29 29 H 1.09001 * 113.79391 * 41.42473 * 10 9 7 30 30 H 1.09000 * 113.79496 * 270.05926 * 10 9 7 31 31 H 1.09000 * 113.68711 * 89.99337 * 12 9 7 32 32 H 1.08998 * 113.96747 * 318.56800 * 12 9 7 33 33 H 1.08995 * 109.74618 * 202.66910 * 13 11 10 34 34 H 1.09001 * 109.74133 * 323.38592 * 13 11 10 35 35 H 1.08997 * 117.53622 * 0.84977 * 18 17 15 36 36 H 1.09000 * 117.53889 * 146.09923 * 18 17 15 37 37 H 1.08996 * 109.35927 * 141.68479 * 21 19 17 38 38 H 1.09003 * 109.35377 * 261.40805 * 21 19 17 39 39 H 1.09006 * 109.61427 * 65.20990 * 22 21 19 40 40 H 1.09006 * 109.61805 * 185.74979 * 22 21 19 41 41 H 1.09007 * 109.61133 * 194.17053 * 23 22 21 42 42 H 1.08993 * 109.61896 * 314.52574 * 23 22 21 43 43 H 1.08992 * 109.26729 * 285.89529 * 24 17 15 44 44 H 1.08998 * 109.26862 * 45.35846 * 24 17 15 45 45 H 1.08998 * 109.59915 * 67.54706 * 25 14 13 46 46 H 1.09003 * 109.59183 * 187.85151 * 25 14 13 47 47 H 1.09006 * 109.48558 * 174.09380 * 26 25 14 48 48 H 1.09001 * 109.48936 * 294.13796 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 1.7213 -3.8107 -0.0019 11 6 0.3480 -4.0845 0.6259 12 6 -0.1062 -2.7596 -0.0006 13 6 -0.3564 -5.3096 0.0422 14 7 0.1656 -6.5055 0.7265 15 6 0.5717 -7.5843 0.0282 16 8 0.4402 -7.6110 -1.1772 17 6 1.1889 -8.7573 0.7450 18 6 2.6496 -8.5986 1.1462 19 6 2.2597 -9.5170 -0.0223 20 1 2.4941 -9.1696 -1.0284 21 6 2.4624 -11.0135 0.2050 22 6 1.1982 -11.6314 0.8026 23 6 0.8260 -10.8531 2.0697 24 6 0.2416 -9.5046 1.6707 25 6 0.2300 -6.4846 2.1962 26 6 0.9767 -5.2215 2.6377 27 8 0.3554 -4.0738 2.0508 28 1 -0.4850 0.8401 -0.0004 29 1 2.5592 -4.0343 0.6585 30 1 1.8410 -4.2337 -0.9994 31 1 -0.5311 -2.8680 -0.9985 32 1 -0.7216 -2.1490 0.6600 33 1 -1.4308 -5.2302 0.2075 34 1 -0.1516 -5.3778 -1.0262 35 1 3.1390 -7.6553 0.9042 36 1 2.9718 -9.0722 2.0736 37 1 2.6857 -11.4964 -0.7463 38 1 3.2954 -11.1650 0.8915 39 1 0.3834 -11.5675 0.0813 40 1 1.3853 -12.6750 1.0557 41 1 0.0912 -11.4179 2.6435 42 1 1.7178 -10.6920 2.6754 43 1 0.0714 -8.9094 2.5678 44 1 -0.7082 -9.6646 1.1604 45 1 -0.7798 -6.4745 2.6063 46 1 0.7600 -7.3684 2.5515 47 1 0.9409 -5.1389 3.7240 48 1 2.0151 -5.2802 2.3114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053420869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:53 Heat of formation + Delta-G solvation = -12.750403 kcal Electronic energy + Delta-G solvation = -28672.275602 eV Core-core repulsion = 24922.065594 eV Total energy + Delta-G solvation = -3750.210009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.17806 -40.96461 -39.10351 -37.79557 -35.80956 -34.32148 -34.03266 -32.15615 -31.30881 -29.44383 -28.01562 -26.93025 -25.78228 -24.69274 -24.63281 -23.22279 -22.34255 -21.01219 -20.25298 -19.25040 -18.84563 -18.23844 -17.65214 -17.13851 -17.06648 -16.51177 -16.11939 -15.81470 -15.57328 -15.22846 -15.13754 -15.02040 -14.90464 -14.71519 -14.26252 -14.19493 -13.96186 -13.66039 -13.37002 -13.19669 -12.99233 -12.89495 -12.79262 -12.63070 -12.49093 -12.11617 -11.95068 -11.86162 -11.74578 -11.71441 -11.53010 -11.46545 -11.02960 -10.90996 -10.82006 -10.63899 -10.56374 -9.59442 -8.98192 -7.93367 -5.27781 1.43235 1.45958 1.47189 1.54846 1.74599 2.43734 2.63702 2.66622 3.19812 3.28812 3.32197 3.51272 3.66021 3.69760 3.76658 3.83670 3.99633 4.04838 4.15037 4.24329 4.26837 4.36516 4.39255 4.49066 4.54644 4.60701 4.62027 4.65242 4.68047 4.74393 4.79985 4.85108 4.91158 5.00686 5.01763 5.10916 5.13702 5.17003 5.25973 5.28712 5.29928 5.34235 5.41840 5.43115 5.54520 5.85949 6.28848 6.36213 6.86341 7.04113 7.55088 8.48361 9.23781 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.029125 B = 0.003073 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.127422 B = 9108.930063 C = 9254.553359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.064 4.064 3 Si 0.983 3.017 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.631 5.631 10 C 0.105 3.895 11 C 0.087 3.913 12 C 0.176 3.824 13 C 0.108 3.892 14 N -0.604 5.604 15 C 0.541 3.459 16 O -0.586 6.586 17 C -0.139 4.139 18 C -0.148 4.148 19 C -0.125 4.125 20 H 0.080 0.920 21 C -0.084 4.084 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.080 4.080 25 C 0.074 3.926 26 C 0.037 3.963 27 O -0.364 6.364 28 H 0.251 0.749 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.131 0.869 47 H 0.134 0.866 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -25.896 9.346 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.357 5.357 10 C -0.021 4.021 11 C 0.045 3.955 12 C 0.051 3.949 13 C -0.017 4.017 14 N -0.336 5.336 15 C 0.331 3.669 16 O -0.466 6.466 17 C -0.142 4.142 18 C -0.185 4.185 19 C -0.143 4.143 20 H 0.098 0.902 21 C -0.121 4.121 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.117 4.117 25 C -0.048 4.048 26 C -0.040 4.040 27 O -0.283 6.283 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.156 0.844 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.149 0.851 47 H 0.152 0.848 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.202 -25.414 8.844 26.999 hybrid contribution 0.245 1.490 -1.020 1.822 sum 2.447 -23.924 7.825 25.290 Atomic orbital electron populations 1.69997 1.06459 1.25827 1.57678 1.25661 0.96654 1.00909 1.02506 0.85021 0.77666 0.78751 0.77505 1.21246 1.21664 1.19283 1.19364 0.90687 0.83173 1.43527 0.90086 1.46144 1.03081 1.00218 1.86279 1.23101 0.96687 0.84922 0.97369 1.23080 0.95654 0.94462 0.82333 1.22131 0.87705 0.88966 0.96139 1.21965 0.98710 0.83109 0.97867 1.48209 1.62856 1.14283 1.08269 1.20478 0.76609 0.83263 0.86565 1.90666 1.57655 1.81655 1.16581 1.20968 0.92844 0.96788 1.03647 1.23396 0.92838 1.01536 1.00703 1.22278 0.99948 0.95893 0.96224 0.90158 1.21095 0.98966 0.90208 1.01849 1.21593 0.97070 0.99904 0.97320 1.21505 1.02095 0.94051 0.97503 1.20896 0.96322 0.96903 0.97602 1.22814 1.03375 1.00449 0.78114 1.23267 0.95945 0.84538 1.00234 1.87995 1.79510 1.43622 1.17137 0.94050 0.93154 0.94307 0.94448 0.92943 0.89659 0.89903 0.89933 0.84382 0.91564 0.89412 0.93315 0.89938 0.89782 0.90008 0.88817 0.92494 0.88889 0.85132 0.84828 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 11.41 21.65 0.25 -58.86 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.24 -14.16 10.70 84.03 0.90 -13.26 16 8 H 0.08 4.60 7.83 -2.91 -0.02 4.57 16 9 N -0.63 -34.62 3.71 -725.32 -2.69 -37.31 16 10 C 0.10 4.66 8.07 86.31 0.70 5.35 16 11 C 0.09 3.48 1.21 -10.50 -0.01 3.46 16 12 C 0.18 8.92 6.90 86.25 0.60 9.52 16 13 C 0.11 3.65 5.76 86.18 0.50 4.15 16 14 N -0.60 -16.65 3.03 -817.84 -2.48 -19.13 16 15 C 0.54 15.71 6.82 87.66 0.60 16.31 16 16 O -0.59 -22.44 16.08 -3.05 -0.05 -22.48 16 17 C -0.14 -2.72 1.31 -53.77 -0.07 -2.79 16 18 C -0.15 -2.35 8.83 30.59 0.27 -2.08 16 19 C -0.12 -2.40 5.64 -10.97 -0.06 -2.46 16 20 H 0.08 2.03 7.88 -2.39 -0.02 2.02 16 21 C -0.08 -1.09 5.83 30.46 0.18 -0.91 16 22 C -0.12 -1.36 5.93 30.65 0.18 -1.18 16 23 C -0.11 -1.02 5.67 30.46 0.17 -0.85 16 24 C -0.08 -1.08 5.00 30.06 0.15 -0.93 16 25 C 0.07 1.46 5.83 86.34 0.50 1.96 16 26 C 0.04 0.91 6.88 72.06 0.50 1.41 16 27 O -0.36 -13.83 10.52 -148.98 -1.57 -15.40 16 28 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.05 2.14 7.28 -2.39 -0.02 2.12 16 30 H 0.04 1.74 7.94 -2.39 -0.02 1.72 16 31 H 0.04 1.91 8.09 -2.39 -0.02 1.89 16 32 H 0.05 2.97 7.20 -2.39 -0.02 2.96 16 33 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.08 3.13 6.94 -2.39 -0.02 3.11 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.14 1.30 7.27 -2.39 -0.02 1.28 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 0.82 8.06 -2.39 -0.02 0.80 16 39 H 0.05 0.72 8.06 -2.38 -0.02 0.70 16 40 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.08 0.52 7.12 -2.39 -0.02 0.50 16 43 H 0.09 0.90 5.85 -2.39 -0.01 0.89 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.13 1.70 4.28 -2.39 -0.01 1.69 16 47 H 0.13 2.45 8.14 -2.38 -0.02 2.43 16 48 H 0.05 1.27 7.20 -2.39 -0.02 1.26 16 Total: -1.00 -77.98 365.95 2.00 -75.98 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.95 Total: 13.69 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 5.56 Total: 14.39 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -4.92 Total: -115.30 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -1.62 Total: -37.88 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -77.98 2.00 -75.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053420869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.233 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds