Wall clock time and date at job start Tue Mar 31 2020 12:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99479 * 2 1 4 4 H 1.48504 * 109.47294 * 90.00541 * 3 2 1 5 5 H 1.48492 * 109.47337 * 330.00011 * 3 2 1 6 6 H 1.48506 * 109.47040 * 209.99992 * 3 2 1 7 7 C 1.38806 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00055 * 15.31692 * 7 2 1 9 9 N 1.36929 * 120.00254 * 195.31964 * 7 2 1 10 10 C 1.47216 * 135.97283 * 7.44046 * 9 7 2 11 11 C 1.53003 * 87.68053 * 153.59826 * 10 9 7 12 12 C 1.47212 * 135.97518 * 187.80786 * 9 7 2 13 13 C 1.53666 * 115.10578 * 140.91446 * 11 10 9 14 14 C 1.55482 * 101.96795 * 111.49037 * 13 11 10 15 15 C 1.55013 * 101.04633 * 33.48818 * 14 13 11 16 16 H 1.09001 * 110.30344 * 82.89422 * 15 14 13 17 17 C 1.53000 * 110.38167 * 204.99825 * 15 14 13 18 18 N 1.46503 * 109.46978 * 182.25519 * 17 15 14 19 19 C 1.34782 * 120.00073 * 180.02562 * 18 17 15 20 20 O 1.21287 * 119.99706 * 0.02562 * 19 18 17 21 21 C 1.50689 * 120.00096 * 180.02562 * 19 18 17 22 22 C 1.53886 * 113.59158 * 277.66369 * 21 19 18 23 23 C 1.53250 * 86.88533 * 220.42776 * 22 21 19 24 24 C 1.52462 * 128.58844 * 165.11036 * 23 22 21 25 25 C 1.52466 * 128.58774 * 245.05708 * 23 22 21 26 26 C 1.53255 * 87.69474 * 25.08240 * 23 22 21 27 27 O 1.42393 * 116.33564 * 269.48738 * 11 10 9 28 28 H 0.97000 * 119.99832 * 174.91548 * 1 2 3 29 29 H 1.08997 * 113.49599 * 268.27643 * 10 9 7 30 30 H 1.09000 * 113.49758 * 38.81000 * 10 9 7 31 31 H 1.09002 * 113.49842 * 321.18496 * 12 9 7 32 32 H 1.09000 * 113.50156 * 91.65690 * 12 9 7 33 33 H 1.08993 * 110.92525 * 229.65983 * 13 11 10 34 34 H 1.09004 * 110.92883 * 353.32120 * 13 11 10 35 35 H 1.08996 * 111.11120 * 275.53875 * 14 13 11 36 36 H 1.09004 * 111.14057 * 151.44357 * 14 13 11 37 37 H 1.09000 * 109.47605 * 302.25879 * 17 15 14 38 38 H 1.09001 * 109.47182 * 62.26332 * 17 15 14 39 39 H 0.97004 * 120.00003 * 0.02562 * 18 17 15 40 40 H 1.09004 * 112.83304 * 48.88539 * 21 19 18 41 41 H 1.08993 * 113.64692 * 334.92620 * 22 21 19 42 42 H 1.09005 * 113.64800 * 105.93153 * 22 21 19 43 43 H 1.08994 * 117.51604 * 225.05216 * 24 23 22 44 44 H 1.09002 * 117.50906 * 10.15165 * 24 23 22 45 45 H 1.09003 * 117.50989 * 349.84544 * 25 23 22 46 46 H 1.08997 * 117.51935 * 134.90597 * 25 23 22 47 47 H 1.09001 * 113.64673 * 220.42232 * 26 23 22 48 48 H 1.08995 * 113.72833 * 89.42275 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 1.4475 2.6526 -0.7000 6 1 3.5477 1.4403 -0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4992 -2.1207 -0.2480 9 7 3.3432 -1.2232 0.3127 10 6 4.3275 -0.2517 0.8172 11 6 5.1038 -1.4345 1.3997 12 6 4.4209 -2.2257 0.2865 13 6 6.6327 -1.3298 1.2872 14 6 7.0539 -1.1512 2.7732 15 6 5.9797 -2.0075 3.4914 16 1 6.2664 -3.0591 3.4825 17 6 5.7862 -1.5231 4.9297 18 7 4.8076 -2.3785 5.6056 19 6 4.4761 -2.1388 6.8898 20 8 4.9876 -1.2145 7.4857 21 6 3.4700 -3.0191 7.5852 22 6 2.0089 -2.6374 7.2891 23 6 1.7245 -2.9132 8.7695 24 6 0.5042 -2.5173 9.5932 25 6 0.8433 -3.9956 9.3830 26 6 3.2020 -2.6135 9.0453 27 8 4.7729 -1.8125 2.7321 28 1 -0.4850 -0.8368 -0.0745 29 1 4.8640 0.2735 0.0270 30 1 3.9251 0.4215 1.5742 31 1 4.0974 -3.2197 0.5954 32 1 4.9821 -2.2362 -0.6478 33 1 7.0557 -2.2434 0.8697 34 1 6.9210 -0.4622 0.6937 35 1 6.9900 -0.1062 3.0764 36 1 8.0539 -1.5479 2.9488 37 1 6.7373 -1.5698 5.4600 38 1 5.4250 -0.4946 4.9212 39 1 4.3983 -3.1176 5.1289 40 1 3.6788 -4.0815 7.4590 41 1 1.8787 -1.5930 7.0061 42 1 1.5056 -3.3271 6.6114 43 1 0.6798 -2.0962 10.5830 44 1 -0.3566 -2.1170 9.0574 45 1 0.2056 -4.5676 8.7089 46 1 1.2422 -4.5473 10.2341 47 1 3.6551 -3.2840 9.7755 48 1 3.4053 -1.5627 9.2515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053659252.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:23 Heat of formation + Delta-G solvation = 31.022004 kcal Electronic energy + Delta-G solvation = -27355.396703 eV Core-core repulsion = 23607.084808 eV Total energy + Delta-G solvation = -3748.311895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.58705 -40.13188 -38.49234 -36.85776 -34.49972 -33.76211 -32.34710 -32.04577 -29.68298 -27.23607 -25.91541 -25.41594 -24.99091 -23.23402 -22.63064 -21.53795 -21.05942 -20.08990 -19.30419 -18.53198 -17.47972 -17.28998 -16.73485 -16.08476 -15.70991 -15.62371 -15.25320 -14.86522 -14.59344 -14.26960 -13.95060 -13.70896 -13.33312 -13.24555 -13.08277 -12.77565 -12.66358 -12.44569 -12.22122 -12.12746 -11.71793 -11.68944 -11.65292 -11.61741 -11.26328 -10.81679 -10.71355 -10.55394 -10.47263 -10.31820 -10.17897 -9.90833 -9.83759 -9.62301 -9.22840 -9.07366 -8.82676 -8.67207 -7.14045 -6.26215 -3.16704 2.61347 3.11001 3.44516 3.49011 3.56117 3.64450 3.79397 4.15375 4.34600 4.47139 4.49689 4.62085 4.63626 4.67412 4.71094 4.79385 4.90180 4.97362 5.01005 5.11477 5.14330 5.37210 5.42528 5.46613 5.48847 5.50057 5.56722 5.59105 5.65796 5.67039 5.71131 5.83015 5.89723 5.93550 5.93732 6.03976 6.07036 6.14747 6.18534 6.26397 6.35594 6.41469 6.44282 6.52871 7.16536 7.48412 7.50376 8.22212 8.27780 9.01809 9.55635 10.41692 11.24147 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.011061 B = 0.003586 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.719113 B = 7806.747343 C = 9478.258601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.023 4.023 3 Si 1.061 2.939 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.283 1.283 7 C -0.300 4.300 8 H 0.081 0.919 9 N -0.617 5.617 10 C 0.097 3.903 11 C 0.071 3.929 12 C 0.113 3.887 13 C -0.137 4.137 14 C -0.146 4.146 15 C 0.063 3.937 16 H 0.075 0.925 17 C 0.123 3.877 18 N -0.720 5.720 19 C 0.523 3.477 20 O -0.546 6.546 21 C -0.132 4.132 22 C -0.082 4.082 23 C -0.164 4.164 24 C -0.165 4.165 25 C -0.152 4.152 26 C -0.074 4.074 27 O -0.331 6.331 28 H 0.260 0.740 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.406 0.594 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.070 0.930 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.771 -8.326 14.785 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.222 4.222 3 Si 0.893 3.107 4 H -0.221 1.221 5 H -0.223 1.223 6 H -0.210 1.210 7 C -0.427 4.427 8 H 0.098 0.902 9 N -0.344 5.344 10 C -0.028 4.028 11 C 0.030 3.970 12 C -0.014 4.014 13 C -0.176 4.176 14 C -0.184 4.184 15 C 0.004 3.996 16 H 0.093 0.907 17 C -0.001 4.001 18 N -0.371 5.371 19 C 0.310 3.690 20 O -0.424 6.424 21 C -0.153 4.153 22 C -0.119 4.119 23 C -0.164 4.164 24 C -0.202 4.202 25 C -0.188 4.188 26 C -0.111 4.111 27 O -0.250 6.250 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.241 0.759 40 H 0.131 0.869 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.089 0.911 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.460 -6.043 15.266 20.611 hybrid contribution 0.133 -2.046 -0.635 2.146 sum 12.593 -8.088 14.631 20.930 Atomic orbital electron populations 1.70900 1.05399 1.29476 1.51768 1.25727 0.96473 1.00797 0.99222 0.83784 0.74462 0.75974 0.76458 1.22086 1.22280 1.20953 1.20084 0.80553 0.95915 1.46125 0.90170 1.46040 1.03624 1.07808 1.76943 1.23029 0.90393 0.93667 0.95753 1.23169 0.91537 0.98472 0.83847 1.22659 0.89440 0.95117 0.94174 1.22905 0.95122 1.03151 0.96419 1.23219 0.98668 1.01188 0.95321 1.23298 0.86306 0.99049 0.90912 0.90727 1.21533 0.92654 0.95574 0.90350 1.45929 1.44496 1.34161 1.12557 1.20469 0.82016 0.84989 0.81559 1.90675 1.54361 1.31560 1.65789 1.22605 0.94661 1.00181 0.97855 1.22415 0.92610 1.02761 0.94153 1.22150 0.92864 1.05278 0.96085 1.22805 0.98687 0.97613 1.01123 1.22791 1.01901 0.91699 1.02454 1.22364 0.91864 1.02883 0.94004 1.88447 1.27179 1.88529 1.20806 0.92929 0.92778 0.92489 0.93230 0.93704 0.90293 0.89669 0.89939 0.89938 0.90425 0.90649 0.75947 0.86944 0.88978 0.90294 0.88692 0.88521 0.88509 0.88667 0.91117 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.06 13.70 55.49 0.76 -29.30 16 2 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 3 Si 1.06 27.32 25.51 -169.99 -4.34 22.98 16 4 H -0.29 -7.37 6.97 56.52 0.39 -6.98 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.28 -6.65 5.65 56.52 0.32 -6.33 16 7 C -0.30 -8.89 11.03 -15.07 -0.17 -9.06 16 8 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 9 N -0.62 -15.58 3.63 -184.60 -0.67 -16.25 16 10 C 0.10 2.10 5.09 -7.91 -0.04 2.06 16 11 C 0.07 1.23 1.75 -90.43 -0.16 1.08 16 12 C 0.11 2.24 8.20 -8.07 -0.07 2.17 16 13 C -0.14 -1.68 6.39 -25.07 -0.16 -1.84 16 14 C -0.15 -1.53 6.58 -24.35 -0.16 -1.69 16 15 C 0.06 0.77 3.48 -25.67 -0.09 0.68 16 16 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 17 C 0.12 1.53 5.39 -4.04 -0.02 1.51 16 18 N -0.72 -8.95 5.54 -60.29 -0.33 -9.28 16 19 C 0.52 7.02 7.35 -10.99 -0.08 6.94 16 20 O -0.55 -9.17 15.89 5.55 0.09 -9.08 16 21 C -0.13 -1.40 4.15 -90.85 -0.38 -1.77 16 22 C -0.08 -0.91 7.64 -26.14 -0.20 -1.11 16 23 C -0.16 -1.63 3.08 -154.80 -0.48 -2.10 16 24 C -0.17 -1.51 10.53 -26.94 -0.28 -1.79 16 25 C -0.15 -1.27 10.53 -26.94 -0.28 -1.55 16 26 C -0.07 -0.77 7.43 -26.14 -0.19 -0.96 16 27 O -0.33 -5.78 10.84 -35.23 -0.38 -6.16 16 28 H 0.26 8.28 8.73 -40.82 -0.36 7.93 16 29 H 0.05 1.10 6.79 -51.93 -0.35 0.75 16 30 H 0.06 1.32 6.28 -51.93 -0.33 1.00 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.82 8.13 -51.93 -0.42 0.39 16 33 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.08 0.98 7.81 -51.93 -0.41 0.57 16 35 H 0.08 0.87 8.05 -51.93 -0.42 0.46 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.41 4.53 8.47 -40.82 -0.35 4.19 16 40 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.10 1.20 7.42 -51.93 -0.39 0.81 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -35.74 382.64 -10.20 -45.94 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.24 Total: 3.63 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.85 Total: -8.24 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.24 Total: -54.83 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.29 Total: -15.24 kcal Atomic # 14 Polarization: 27.32 SS G_CDS: -4.34 Total: 22.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.74 -10.20 -45.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053659252.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.964 kcal (2) G-P(sol) polarization free energy of solvation -35.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds