Wall clock time and date at job start Tue Mar 31 2020 12:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99479 * 2 1 4 4 H 1.48504 * 109.47294 * 90.00541 * 3 2 1 5 5 H 1.48492 * 109.47337 * 330.00011 * 3 2 1 6 6 H 1.48506 * 109.47040 * 209.99992 * 3 2 1 7 7 C 1.38806 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00055 * 15.31692 * 7 2 1 9 9 N 1.36929 * 120.00254 * 195.31964 * 7 2 1 10 10 C 1.47216 * 135.97283 * 7.44046 * 9 7 2 11 11 C 1.53003 * 87.68053 * 153.59826 * 10 9 7 12 12 C 1.47212 * 135.97518 * 187.80786 * 9 7 2 13 13 C 1.53666 * 115.10578 * 140.91446 * 11 10 9 14 14 C 1.55482 * 101.96795 * 111.49037 * 13 11 10 15 15 C 1.55013 * 101.04633 * 33.48818 * 14 13 11 16 16 H 1.09001 * 110.30344 * 82.89422 * 15 14 13 17 17 C 1.53000 * 110.38167 * 204.99825 * 15 14 13 18 18 N 1.46503 * 109.46978 * 182.25519 * 17 15 14 19 19 C 1.34782 * 120.00073 * 180.02562 * 18 17 15 20 20 O 1.21287 * 119.99706 * 0.02562 * 19 18 17 21 21 C 1.50689 * 120.00096 * 180.02562 * 19 18 17 22 22 C 1.53886 * 113.59158 * 277.66369 * 21 19 18 23 23 C 1.53250 * 86.88533 * 220.42776 * 22 21 19 24 24 C 1.52462 * 128.58844 * 165.11036 * 23 22 21 25 25 C 1.52466 * 128.58774 * 245.05708 * 23 22 21 26 26 C 1.53255 * 87.69474 * 25.08240 * 23 22 21 27 27 O 1.42393 * 116.33564 * 269.48738 * 11 10 9 28 28 H 0.97000 * 119.99832 * 174.91548 * 1 2 3 29 29 H 1.08997 * 113.49599 * 268.27643 * 10 9 7 30 30 H 1.09000 * 113.49758 * 38.81000 * 10 9 7 31 31 H 1.09002 * 113.49842 * 321.18496 * 12 9 7 32 32 H 1.09000 * 113.50156 * 91.65690 * 12 9 7 33 33 H 1.08993 * 110.92525 * 229.65983 * 13 11 10 34 34 H 1.09004 * 110.92883 * 353.32120 * 13 11 10 35 35 H 1.08996 * 111.11120 * 275.53875 * 14 13 11 36 36 H 1.09004 * 111.14057 * 151.44357 * 14 13 11 37 37 H 1.09000 * 109.47605 * 302.25879 * 17 15 14 38 38 H 1.09001 * 109.47182 * 62.26332 * 17 15 14 39 39 H 0.97004 * 120.00003 * 0.02562 * 18 17 15 40 40 H 1.09004 * 112.83304 * 48.88539 * 21 19 18 41 41 H 1.08993 * 113.64692 * 334.92620 * 22 21 19 42 42 H 1.09005 * 113.64800 * 105.93153 * 22 21 19 43 43 H 1.08994 * 117.51604 * 225.05216 * 24 23 22 44 44 H 1.09002 * 117.50906 * 10.15165 * 24 23 22 45 45 H 1.09003 * 117.50989 * 349.84544 * 25 23 22 46 46 H 1.08997 * 117.51935 * 134.90597 * 25 23 22 47 47 H 1.09001 * 113.64673 * 220.42232 * 26 23 22 48 48 H 1.08995 * 113.72833 * 89.42275 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 1.4475 2.6526 -0.7000 6 1 3.5477 1.4403 -0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4992 -2.1207 -0.2480 9 7 3.3432 -1.2232 0.3127 10 6 4.3275 -0.2517 0.8172 11 6 5.1038 -1.4345 1.3997 12 6 4.4209 -2.2257 0.2865 13 6 6.6327 -1.3298 1.2872 14 6 7.0539 -1.1512 2.7732 15 6 5.9797 -2.0075 3.4914 16 1 6.2664 -3.0591 3.4825 17 6 5.7862 -1.5231 4.9297 18 7 4.8076 -2.3785 5.6056 19 6 4.4761 -2.1388 6.8898 20 8 4.9876 -1.2145 7.4857 21 6 3.4700 -3.0191 7.5852 22 6 2.0089 -2.6374 7.2891 23 6 1.7245 -2.9132 8.7695 24 6 0.5042 -2.5173 9.5932 25 6 0.8433 -3.9956 9.3830 26 6 3.2020 -2.6135 9.0453 27 8 4.7729 -1.8125 2.7321 28 1 -0.4850 -0.8368 -0.0745 29 1 4.8640 0.2735 0.0270 30 1 3.9251 0.4215 1.5742 31 1 4.0974 -3.2197 0.5954 32 1 4.9821 -2.2362 -0.6478 33 1 7.0557 -2.2434 0.8697 34 1 6.9210 -0.4622 0.6937 35 1 6.9900 -0.1062 3.0764 36 1 8.0539 -1.5479 2.9488 37 1 6.7373 -1.5698 5.4600 38 1 5.4250 -0.4946 4.9212 39 1 4.3983 -3.1176 5.1289 40 1 3.6788 -4.0815 7.4590 41 1 1.8787 -1.5930 7.0061 42 1 1.5056 -3.3271 6.6114 43 1 0.6798 -2.0962 10.5830 44 1 -0.3566 -2.1170 9.0574 45 1 0.2056 -4.5676 8.7089 46 1 1.2422 -4.5473 10.2341 47 1 3.6551 -3.2840 9.7755 48 1 3.4053 -1.5627 9.2515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053659252.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:22 Heat of formation + Delta-G solvation = 5.498980 kcal Electronic energy + Delta-G solvation = -27356.503464 eV Core-core repulsion = 23607.084808 eV Total energy + Delta-G solvation = -3749.418656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.66166 -41.32005 -39.47268 -38.28900 -35.68677 -34.59557 -34.45519 -33.13961 -31.04292 -28.85834 -27.06067 -26.78842 -26.13601 -24.41022 -23.33605 -22.69287 -22.54046 -21.10454 -20.79482 -19.56021 -19.34920 -18.27597 -17.85827 -17.28926 -17.09253 -16.56562 -16.15210 -16.03856 -15.81558 -15.65081 -15.46938 -15.17342 -15.09795 -14.69425 -14.30456 -13.77045 -13.69995 -13.48045 -13.35521 -13.25125 -13.04444 -12.68434 -12.61889 -12.58117 -12.35971 -12.34621 -12.20001 -11.82852 -11.71103 -11.41828 -11.36544 -11.30516 -11.29333 -10.85554 -10.78564 -10.54131 -10.26227 -10.13345 -9.24758 -8.63706 -5.45541 1.34888 1.45896 1.55437 1.61504 2.14905 2.52046 2.61988 2.81767 3.04940 3.15216 3.35742 3.48826 3.50713 3.61556 3.63691 3.74785 3.85091 3.89768 3.91849 4.12924 4.17240 4.35310 4.43745 4.47802 4.54266 4.59088 4.66776 4.71148 4.72980 4.75303 4.76886 4.78710 4.83033 4.93314 4.95191 4.96658 5.01001 5.04519 5.12842 5.20678 5.23039 5.26368 5.29005 5.30752 5.42391 5.94146 6.26821 6.49665 6.69045 7.18959 7.33523 8.28622 8.88451 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.011061 B = 0.003586 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.719113 B = 7806.747343 C = 9478.258601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.086 4.086 3 Si 1.101 2.899 4 H -0.290 1.290 5 H -0.300 1.300 6 H -0.245 1.245 7 C -0.287 4.287 8 H 0.046 0.954 9 N -0.655 5.655 10 C 0.086 3.914 11 C 0.089 3.911 12 C 0.110 3.890 13 C -0.127 4.127 14 C -0.137 4.137 15 C 0.061 3.939 16 H 0.101 0.899 17 C 0.123 3.877 18 N -0.717 5.717 19 C 0.518 3.482 20 O -0.585 6.585 21 C -0.123 4.123 22 C -0.088 4.088 23 C -0.173 4.173 24 C -0.174 4.174 25 C -0.133 4.133 26 C -0.072 4.072 27 O -0.367 6.367 28 H 0.245 0.755 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.412 0.588 40 H 0.142 0.858 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.113 0.887 47 H 0.089 0.911 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.419 -9.536 15.362 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.277 4.277 3 Si 0.927 3.073 4 H -0.217 1.217 5 H -0.228 1.228 6 H -0.170 1.170 7 C -0.415 4.415 8 H 0.064 0.936 9 N -0.383 5.383 10 C -0.039 4.039 11 C 0.048 3.952 12 C -0.015 4.015 13 C -0.165 4.165 14 C -0.175 4.175 15 C 0.004 3.996 16 H 0.119 0.881 17 C -0.001 4.001 18 N -0.367 5.367 19 C 0.306 3.694 20 O -0.466 6.466 21 C -0.144 4.144 22 C -0.126 4.126 23 C -0.173 4.173 24 C -0.211 4.211 25 C -0.170 4.170 26 C -0.110 4.110 27 O -0.287 6.287 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.248 0.752 40 H 0.160 0.840 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.110 0.890 45 H 0.121 0.879 46 H 0.131 0.869 47 H 0.107 0.893 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.170 -7.306 15.831 23.779 hybrid contribution -1.003 -1.791 -0.775 2.194 sum 15.166 -9.097 15.055 23.226 Atomic orbital electron populations 1.71010 1.06745 1.28619 1.55286 1.27028 0.96510 1.04421 0.99766 0.83332 0.74952 0.72111 0.76941 1.21735 1.22785 1.16954 1.19945 0.83371 0.94487 1.43692 0.93575 1.46141 1.03421 1.11229 1.77474 1.23336 0.90085 0.94488 0.95973 1.22869 0.94656 0.94543 0.83171 1.22946 0.88068 0.93973 0.96535 1.22923 0.90359 1.05275 0.97971 1.23264 0.99786 1.00932 0.93524 1.23572 0.85270 1.00961 0.89832 0.88146 1.21562 0.93254 0.94070 0.91191 1.45984 1.44314 1.34114 1.12337 1.20986 0.81955 0.84746 0.81734 1.90652 1.55956 1.33256 1.66697 1.22685 0.93090 1.01093 0.97533 1.22363 0.93512 1.01228 0.95508 1.22117 0.92948 1.07296 0.94949 1.22899 0.98052 0.98832 1.01305 1.22899 1.00470 0.91115 1.02518 1.22284 0.92441 1.01903 0.94331 1.88419 1.30563 1.88394 1.21277 0.94545 0.90584 0.94814 0.93939 0.90775 0.87532 0.88217 0.90289 0.86035 0.88455 0.93531 0.75189 0.84044 0.91762 0.89849 0.87872 0.89024 0.87930 0.86871 0.89261 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.34 13.70 21.65 0.30 -65.04 16 2 C -0.09 -5.35 5.50 84.86 0.47 -4.89 16 3 Si 1.10 55.78 25.51 68.60 1.75 57.53 16 4 H -0.29 -14.37 6.97 99.48 0.69 -13.68 16 5 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 6 H -0.25 -10.74 5.65 99.48 0.56 -10.18 16 7 C -0.29 -17.51 11.03 84.03 0.93 -16.58 16 8 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 9 N -0.65 -32.84 3.63 -739.01 -2.68 -35.52 16 10 C 0.09 3.54 5.09 83.48 0.43 3.97 16 11 C 0.09 2.85 1.75 -10.67 -0.02 2.83 16 12 C 0.11 4.14 8.20 83.38 0.68 4.82 16 13 C -0.13 -2.45 6.39 31.67 0.20 -2.25 16 14 C -0.14 -2.22 6.58 32.14 0.21 -2.01 16 15 C 0.06 1.30 3.48 31.28 0.11 1.40 16 16 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 17 C 0.12 2.88 5.39 86.38 0.47 3.34 16 18 N -0.72 -17.18 5.54 -463.05 -2.56 -19.75 16 19 C 0.52 13.82 7.35 87.65 0.64 14.46 16 20 O -0.59 -19.95 15.89 -3.05 -0.05 -20.00 16 21 C -0.12 -2.51 4.15 -10.95 -0.05 -2.56 16 22 C -0.09 -1.99 7.64 30.98 0.24 -1.76 16 23 C -0.17 -3.31 3.08 -52.37 -0.16 -3.47 16 24 C -0.17 -3.05 10.53 30.46 0.32 -2.73 16 25 C -0.13 -1.96 10.53 30.46 0.32 -1.64 16 26 C -0.07 -1.46 7.43 30.98 0.23 -1.23 16 27 O -0.37 -12.21 10.84 -148.98 -1.62 -13.83 16 28 H 0.25 16.56 8.73 -92.71 -0.81 15.75 16 29 H 0.08 2.80 6.79 -2.39 -0.02 2.79 16 30 H 0.03 1.54 6.28 -2.39 -0.01 1.52 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 33 H 0.11 1.56 8.13 -2.39 -0.02 1.54 16 34 H 0.10 1.71 7.81 -2.38 -0.02 1.69 16 35 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16 36 H 0.12 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.41 8.72 8.47 -92.71 -0.79 7.94 16 40 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.06 1.78 8.09 -2.39 -0.02 1.76 16 42 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.07 1.88 7.42 -2.39 -0.02 1.87 16 Total: -1.00 -83.10 382.64 0.12 -82.98 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.03 Total: 21.90 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.02 Total: -8.28 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -4.95 Total: -120.31 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.66 Total: -33.83 kcal Atomic # 14 Polarization: 55.78 SS G_CDS: 1.75 Total: 57.53 kcal Total: -83.10 0.12 -82.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053659252.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.479 kcal (2) G-P(sol) polarization free energy of solvation -83.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds