Wall clock time and date at job start Tue Mar 31 2020 12:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48496 * 109.47271 * 179.72112 * 3 2 1 5 5 H 1.48495 * 109.47241 * 299.72782 * 3 2 1 6 6 H 1.48511 * 109.46885 * 59.72524 * 3 2 1 7 7 C 1.38811 * 120.00417 * 179.72696 * 2 1 3 8 8 H 1.08000 * 120.00275 * 198.83228 * 7 2 1 9 9 N 1.36937 * 119.99693 * 18.82307 * 7 2 1 10 10 C 1.47219 * 135.96621 * 8.48912 * 9 7 2 11 11 C 1.52963 * 87.66900 * 153.63791 * 10 9 7 12 12 C 1.47226 * 135.96681 * 188.85006 * 9 7 2 13 13 C 1.53320 * 115.75822 * 270.15595 * 11 10 9 14 14 C 1.55021 * 103.78546 * 229.61546 * 13 11 10 15 15 H 1.08997 * 110.87595 * 139.02147 * 14 13 11 16 16 N 1.46505 * 110.86857 * 262.70137 * 14 13 11 17 17 C 1.34771 * 120.00321 * 204.99683 * 16 14 13 18 18 O 1.21288 * 119.99545 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00695 * 180.02562 * 17 16 14 20 20 H 1.08998 * 115.56698 * 325.59068 * 19 17 16 21 21 C 1.52304 * 117.53618 * 111.43219 * 19 17 16 22 22 H 1.08992 * 115.91791 * 0.85720 * 21 19 17 23 23 C 1.52072 * 119.83772 * 217.19918 * 21 19 17 24 24 C 1.52874 * 110.51769 * 310.45077 * 23 21 19 25 25 C 1.53296 * 108.58991 * 305.11294 * 24 23 21 26 26 C 1.51051 * 108.39140 * 74.32771 * 25 24 23 27 27 C 1.52301 * 60.58387 * 107.41864 * 21 19 17 28 28 H 1.09002 * 117.29571 * 252.90075 * 27 21 19 29 29 C 1.55062 * 102.13231 * 20.85913 * 14 13 11 30 30 O 1.42839 * 115.80299 * 141.75411 * 11 10 9 31 31 H 0.97000 * 119.99767 * 185.73948 * 1 2 3 32 32 H 1.09001 * 113.49828 * 268.30794 * 10 9 7 33 33 H 1.08994 * 113.50185 * 38.85929 * 10 9 7 34 34 H 1.08995 * 113.50170 * 321.14621 * 12 9 7 35 35 H 1.09007 * 113.50048 * 91.62496 * 12 9 7 36 36 H 1.09005 * 110.56443 * 348.19029 * 13 11 10 37 37 H 1.08999 * 110.56017 * 111.03454 * 13 11 10 38 38 H 0.97002 * 120.00044 * 25.00837 * 16 14 13 39 39 H 1.09000 * 109.26706 * 70.71824 * 23 21 19 40 40 H 1.09006 * 109.27186 * 190.21799 * 23 21 19 41 41 H 1.09002 * 109.61484 * 64.83883 * 24 23 21 42 42 H 1.08998 * 109.62043 * 185.19476 * 24 23 21 43 43 H 1.09004 * 109.61546 * 194.16899 * 25 24 23 44 44 H 1.09000 * 109.61908 * 314.53000 * 25 24 23 45 45 H 1.08998 * 109.13514 * 184.71710 * 26 25 24 46 46 H 1.09003 * 108.57115 * 65.73099 * 26 25 24 47 47 H 1.09004 * 110.57945 * 82.02980 * 29 14 13 48 48 H 1.09000 * 110.58729 * 204.93516 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0068 5 1 1.8964 2.3936 -1.2158 6 1 1.8863 2.3994 1.2092 7 6 2.0103 -1.2021 0.0057 8 1 3.0470 -1.2256 0.3078 9 7 1.3806 -2.3581 -0.3714 10 6 0.0830 -2.7091 -0.9717 11 6 0.7522 -3.9658 -1.5308 12 6 1.7021 -3.7946 -0.3482 13 6 1.3895 -3.8205 -2.9177 14 6 0.8309 -5.0304 -3.7096 15 1 0.5691 -4.7410 -4.7274 16 7 1.7874 -6.1401 -3.7106 17 6 1.7601 -7.0525 -4.7021 18 8 0.9438 -6.9546 -5.5939 19 6 2.7436 -8.1943 -4.7029 20 1 3.7327 -7.9634 -4.3075 21 6 2.1968 -9.5947 -4.4587 22 1 1.1189 -9.6668 -4.3142 23 6 3.0049 -10.5906 -3.6415 24 6 4.4459 -10.6551 -4.1479 25 6 4.4231 -10.9707 -5.6478 26 6 3.9898 -9.7283 -6.3897 27 6 2.6579 -9.2050 -5.8570 28 1 1.8868 -9.0379 -6.6091 29 6 -0.4375 -5.3951 -2.8956 30 8 -0.0462 -5.1503 -1.5252 31 1 -0.4850 -0.8359 0.0840 32 1 -0.6931 -2.9207 -0.2362 33 1 -0.2434 -2.0096 -1.7412 34 1 2.7423 -4.0112 -0.5914 35 1 1.3664 -4.3006 0.5571 36 1 1.0834 -2.8837 -3.3835 37 1 2.4758 -3.8772 -2.8477 38 1 2.4403 -6.2182 -2.9975 39 1 3.0045 -10.2822 -2.5960 40 1 2.5502 -11.5777 -3.7254 41 1 4.9349 -9.6948 -3.9834 42 1 4.9866 -11.4370 -3.6147 43 1 5.4199 -11.2673 -5.9745 44 1 3.7188 -11.7799 -5.8409 45 1 3.8883 -9.9622 -7.4495 46 1 4.7556 -8.9632 -6.2625 47 1 -1.2714 -4.7519 -3.1768 48 1 -0.6962 -6.4442 -3.0386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053767607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:28 Heat of formation + Delta-G solvation = -10.960156 kcal Electronic energy + Delta-G solvation = -27413.514889 eV Core-core repulsion = 23663.382512 eV Total energy + Delta-G solvation = -3750.132378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.84325 -40.08802 -38.53915 -36.58385 -34.37878 -33.48673 -32.31920 -31.19361 -30.51035 -28.04242 -25.91700 -25.79665 -24.86617 -23.06549 -22.93038 -22.07399 -21.04663 -20.24834 -18.94624 -18.87584 -17.67054 -17.47913 -16.68168 -15.80874 -15.41707 -15.15487 -14.96064 -14.69976 -14.37239 -14.32527 -14.13463 -14.00159 -13.75774 -13.68860 -13.24296 -12.77957 -12.69672 -12.52326 -12.26996 -12.12909 -11.54964 -11.50031 -11.39297 -11.24904 -11.22471 -11.09515 -10.88035 -10.69629 -10.65681 -10.20436 -10.14977 -10.11619 -10.08192 -9.78597 -9.56147 -9.25904 -8.79285 -8.67351 -7.09586 -6.17241 -3.20472 2.35632 2.98094 3.46090 3.50329 3.51440 3.62361 4.08861 4.25650 4.34772 4.40294 4.50727 4.58018 4.61458 4.69992 4.79520 4.91672 4.97028 4.98776 5.01038 5.11321 5.15888 5.18921 5.24151 5.34342 5.41402 5.47074 5.56054 5.57880 5.62172 5.74385 5.75870 5.79658 5.84935 5.92014 5.93696 6.01555 6.06487 6.13231 6.25655 6.39437 6.42935 6.45973 6.61697 6.70928 7.19559 7.38920 7.45685 8.13892 8.25348 8.85818 9.70351 10.42798 11.23764 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.002525 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.099640 B =11086.206662 C =11338.866133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.032 4.032 3 Si 1.081 2.919 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.315 4.315 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.124 3.876 11 C 0.052 3.948 12 C 0.129 3.871 13 C -0.115 4.115 14 C 0.107 3.893 15 H 0.106 0.894 16 N -0.709 5.709 17 C 0.543 3.457 18 O -0.546 6.546 19 C -0.191 4.191 20 H 0.123 0.877 21 C -0.109 4.109 22 H 0.104 0.896 23 C -0.091 4.091 24 C -0.125 4.125 25 C -0.120 4.120 26 C -0.091 4.091 27 C -0.110 4.110 28 H 0.116 0.884 29 C 0.040 3.960 30 O -0.360 6.360 31 H 0.267 0.733 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.404 0.596 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.571 -21.870 -11.116 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.232 4.232 3 Si 0.911 3.089 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.442 4.442 8 H 0.094 0.906 9 N -0.337 5.337 10 C -0.002 4.002 11 C 0.011 3.989 12 C 0.002 3.998 13 C -0.154 4.154 14 C 0.002 3.998 15 H 0.124 0.876 16 N -0.359 5.359 17 C 0.330 3.670 18 O -0.423 6.423 19 C -0.212 4.212 20 H 0.141 0.859 21 C -0.128 4.128 22 H 0.122 0.878 23 C -0.128 4.128 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.129 4.129 27 C -0.128 4.128 28 H 0.134 0.866 29 C -0.038 4.038 30 O -0.278 6.278 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.239 0.761 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.909 -20.013 -11.561 24.123 hybrid contribution 0.371 -1.410 0.612 1.581 sum 7.281 -21.423 -10.950 25.136 Atomic orbital electron populations 1.70699 1.06356 1.30222 1.50022 1.25867 0.96858 1.00889 0.99585 0.83270 0.73843 0.74999 0.76796 1.21826 1.21593 1.21985 1.19798 0.94701 0.84154 1.45522 0.90572 1.45645 1.15711 1.00085 1.72266 1.22667 0.90431 0.91624 0.95515 1.23713 0.93543 0.86124 0.95477 1.22385 0.95961 0.87107 0.94330 1.22675 1.01592 0.97546 0.93545 1.22609 0.89640 0.86348 1.01169 0.87615 1.45891 1.36500 1.26729 1.26830 1.19724 0.83828 0.82266 0.81161 1.90685 1.39419 1.75445 1.36789 1.22486 1.00449 0.90149 1.08109 0.85917 1.21900 1.00200 0.92822 0.97883 0.87833 1.20912 0.94755 0.98228 0.98897 1.21652 0.96540 1.01963 0.96072 1.21258 1.01304 0.97861 0.95285 1.20743 0.94717 0.97605 0.99805 1.22360 0.99729 0.99327 0.91401 0.86561 1.23919 0.95904 1.01575 0.82411 1.88767 1.69485 1.44085 1.25428 0.92130 0.94206 0.92825 0.93572 0.94294 0.88745 0.89629 0.76126 0.91081 0.90939 0.91755 0.91595 0.91733 0.91590 0.91252 0.91529 0.91214 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.35 55.49 0.74 -27.93 16 2 C -0.03 -0.92 5.44 -17.43 -0.09 -1.02 16 3 Si 1.08 25.44 29.96 -169.99 -5.09 20.35 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.32 -8.89 10.65 -15.06 -0.16 -9.05 16 8 H 0.08 2.10 7.90 -52.49 -0.41 1.69 16 9 N -0.61 -15.53 3.64 -184.58 -0.67 -16.20 16 10 C 0.12 2.89 5.68 -7.87 -0.04 2.84 16 11 C 0.05 0.98 1.66 -90.66 -0.15 0.83 16 12 C 0.13 2.68 8.20 -8.03 -0.07 2.61 16 13 C -0.12 -1.83 6.11 -25.50 -0.16 -1.98 16 14 C 0.11 1.49 3.51 -65.77 -0.23 1.25 16 15 H 0.11 1.49 7.55 -51.93 -0.39 1.10 16 16 N -0.71 -8.59 5.15 -51.72 -0.27 -8.85 16 17 C 0.54 6.85 7.61 -10.99 -0.08 6.76 16 18 O -0.55 -8.70 15.91 5.55 0.09 -8.61 16 19 C -0.19 -1.81 5.31 -91.79 -0.49 -2.29 16 20 H 0.12 0.98 7.26 -51.93 -0.38 0.61 16 21 C -0.11 -0.93 5.71 -91.80 -0.52 -1.45 16 22 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 23 C -0.09 -0.60 5.93 -27.27 -0.16 -0.77 16 24 C -0.12 -0.75 5.70 -26.64 -0.15 -0.90 16 25 C -0.12 -0.70 5.89 -27.56 -0.16 -0.87 16 26 C -0.09 -0.63 5.67 -27.86 -0.16 -0.79 16 27 C -0.11 -0.97 5.77 -90.79 -0.52 -1.49 16 28 H 0.12 1.21 7.67 -51.93 -0.40 0.81 16 29 C 0.04 0.59 7.42 38.25 0.28 0.87 16 30 O -0.36 -6.34 11.32 -35.23 -0.40 -6.74 16 31 H 0.27 8.22 5.94 -40.82 -0.24 7.98 16 32 H 0.04 0.98 7.95 -51.93 -0.41 0.57 16 33 H 0.05 1.32 7.81 -51.93 -0.41 0.91 16 34 H 0.05 0.88 7.91 -51.93 -0.41 0.47 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.58 7.82 -51.93 -0.41 1.18 16 37 H 0.09 1.30 7.70 -51.93 -0.40 0.90 16 38 H 0.40 4.30 8.63 -40.82 -0.35 3.95 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.40 7.10 -51.93 -0.37 0.03 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.39 8.05 -51.93 -0.42 -0.03 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -33.32 377.53 -10.80 -44.12 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.02 Total: 3.62 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.87 Total: -5.44 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.20 Total: -52.99 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.31 Total: -15.35 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.09 Total: 20.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.32 -10.80 -44.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053767607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.164 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds