Wall clock time and date at job start Tue Mar 31 2020 13:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99972 * 2 1 4 4 H 1.48499 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46684 * 300.00001 * 3 2 1 6 6 H 1.48490 * 109.47167 * 59.99832 * 3 2 1 7 7 C 1.38809 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00308 * 194.44251 * 7 2 1 9 9 N 1.36941 * 120.00204 * 14.44343 * 7 2 1 10 10 C 1.47355 * 121.30220 * 26.93683 * 9 7 2 11 11 C 1.53189 * 108.80604 * 129.78595 * 10 9 7 12 12 O 1.43142 * 109.73926 * 51.20458 * 11 10 9 13 13 C 1.42600 * 113.62945 * 298.31101 * 12 11 10 14 14 H 1.08998 * 109.33935 * 304.43208 * 13 12 11 15 15 C 1.52779 * 111.12093 * 183.64321 * 13 12 11 16 16 C 1.53367 * 108.81658 * 177.93956 * 15 13 12 17 17 N 1.46836 * 109.24305 * 53.83861 * 16 15 13 18 18 C 1.34777 * 120.40907 * 127.74553 * 17 16 15 19 19 O 1.21277 * 120.00227 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99867 * 0.02562 * 18 17 16 21 21 C 1.53883 * 113.58614 * 277.66058 * 20 18 17 22 22 C 1.53256 * 86.88506 * 220.43052 * 21 20 18 23 23 C 1.52462 * 128.58514 * 165.11330 * 22 21 20 24 24 C 1.52462 * 128.58590 * 245.06177 * 22 21 20 25 25 C 1.53255 * 87.69208 * 25.08458 * 22 21 20 26 26 C 1.47127 * 119.18297 * 308.02205 * 17 16 15 27 27 C 1.46799 * 121.69054 * 207.29710 * 9 7 2 28 28 H 1.08998 * 110.05124 * 112.53797 * 27 9 7 29 29 H 0.96996 * 120.00226 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.57653 * 9.98864 * 10 9 7 31 31 H 1.08993 * 109.68919 * 249.65405 * 10 9 7 32 32 H 1.09005 * 109.42776 * 291.12029 * 11 10 9 33 33 H 1.09006 * 109.37904 * 171.25890 * 11 10 9 34 34 H 1.09008 * 109.58052 * 58.13512 * 15 13 12 35 35 H 1.09007 * 109.69150 * 297.80411 * 15 13 12 36 36 H 1.08997 * 109.50662 * 293.90737 * 16 15 13 37 37 H 1.09004 * 109.51102 * 173.77176 * 16 15 13 38 38 H 1.08995 * 112.83012 * 48.88372 * 20 18 17 39 39 H 1.09000 * 113.65379 * 334.93014 * 21 20 18 40 40 H 1.09006 * 113.64721 * 105.93558 * 21 20 18 41 41 H 1.08998 * 117.51205 * 225.04479 * 23 22 21 42 42 H 1.09000 * 117.51502 * 10.15231 * 23 22 21 43 43 H 1.09005 * 117.51369 * 349.84185 * 24 22 21 44 44 H 1.08998 * 117.51787 * 134.90578 * 24 22 21 45 45 H 1.09000 * 113.64707 * 220.41980 * 25 22 21 46 46 H 1.08997 * 113.72832 * 89.42548 * 25 22 21 47 47 H 1.08998 * 109.73123 * 172.62273 * 26 17 16 48 48 H 1.09006 * 109.72389 * 293.28839 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0647 -1.2168 0.2338 9 7 1.3581 -2.3695 -0.2947 10 6 0.1600 -2.3813 -1.1524 11 6 0.3449 -3.4394 -2.2446 12 8 0.7234 -4.6858 -1.6511 13 6 1.9624 -4.6308 -0.9474 14 1 2.7420 -4.2671 -1.6168 15 6 2.3547 -6.0080 -0.4149 16 6 3.7147 -5.8987 0.2854 17 7 3.6532 -4.8384 1.2993 18 6 4.0303 -5.0862 2.5693 19 8 3.9760 -4.2052 3.4009 20 6 4.5195 -6.4582 2.9559 21 6 3.3855 -7.4554 3.2520 22 6 4.2439 -7.9567 4.4185 23 6 3.8296 -8.8306 5.5971 24 6 4.8866 -9.3263 4.6063 25 6 4.9108 -6.5770 4.4395 26 6 3.1689 -3.5039 0.9132 27 6 1.8133 -3.6617 0.2324 28 1 1.0832 -4.0548 0.9399 29 1 -0.4850 0.8400 -0.0004 30 1 0.0298 -1.4012 -1.6115 31 1 -0.7179 -2.6237 -0.5537 32 1 1.1236 -3.1154 -2.9352 33 1 -0.5917 -3.5660 -2.7878 34 1 2.4257 -6.7133 -1.2431 35 1 1.6045 -6.3542 0.2962 36 1 4.4835 -5.6565 -0.4484 37 1 3.9546 -6.8477 0.7651 38 1 5.2755 -6.8456 2.2731 39 1 2.4561 -6.9802 3.5657 40 1 3.2393 -8.1970 2.4666 41 1 4.1697 -8.5327 6.5889 42 1 2.8446 -9.2958 5.5574 43 1 4.5968 -10.1177 3.9149 44 1 5.9220 -9.3545 4.9458 45 1 5.9873 -6.6142 4.6061 46 1 4.4071 -5.8561 5.0835 47 1 3.0629 -2.8799 1.8007 48 1 3.8735 -3.0429 0.2209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074336448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:42 Heat of formation + Delta-G solvation = -16.909643 kcal Electronic energy + Delta-G solvation = -28556.320120 eV Core-core repulsion = 24805.929754 eV Total energy + Delta-G solvation = -3750.390367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.84450 -40.62320 -39.28458 -37.41861 -36.57049 -34.60874 -33.43283 -32.94490 -31.44512 -29.07392 -27.26721 -26.73290 -25.50959 -25.14137 -23.47775 -23.25088 -22.63248 -21.42813 -19.88950 -19.24884 -18.72675 -18.44599 -17.25006 -17.10048 -16.78138 -16.59458 -16.35318 -15.99539 -15.94068 -15.61566 -15.31867 -15.17926 -14.71163 -14.65982 -14.00210 -13.92058 -13.72692 -13.37522 -13.28897 -13.00670 -12.96617 -12.87329 -12.69101 -12.47724 -12.37376 -12.30311 -12.26696 -12.03770 -11.91746 -11.74183 -11.29534 -11.23605 -11.22017 -10.78158 -10.70481 -10.55181 -10.46909 -9.69636 -8.77613 -7.94292 -5.43649 1.41246 1.43310 1.53459 1.57531 1.91006 2.43959 2.81477 2.87502 3.20800 3.39875 3.43801 3.47875 3.67730 3.72741 3.88700 3.93573 3.97113 4.07726 4.15312 4.17247 4.27725 4.40153 4.41128 4.49652 4.53431 4.57772 4.67776 4.77895 4.80339 4.82975 4.85180 4.85894 4.86433 4.99284 5.04417 5.07254 5.09752 5.12564 5.26564 5.29867 5.34726 5.37622 5.45721 5.53668 5.59452 6.22935 6.32755 6.43218 7.01463 7.16711 7.68962 8.24584 9.11696 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.003738 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.090088 B = 7489.617925 C = 8609.940565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.296 1.296 7 C -0.260 4.260 8 H 0.074 0.926 9 N -0.606 5.606 10 C 0.145 3.855 11 C 0.053 3.947 12 O -0.392 6.392 13 C 0.081 3.919 14 H 0.057 0.943 15 C -0.116 4.116 16 C 0.110 3.890 17 N -0.609 5.609 18 C 0.513 3.487 19 O -0.594 6.594 20 C -0.120 4.120 21 C -0.076 4.076 22 C -0.170 4.170 23 C -0.176 4.176 24 C -0.128 4.128 25 C -0.083 4.083 26 C 0.137 3.863 27 C 0.134 3.866 28 H 0.002 0.998 29 H 0.251 0.749 30 H 0.072 0.928 31 H -0.006 1.006 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.596 -21.814 0.644 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.223 1.223 7 C -0.390 4.390 8 H 0.092 0.908 9 N -0.331 5.331 10 C 0.019 3.981 11 C -0.025 4.025 12 O -0.311 6.311 13 C 0.022 3.978 14 H 0.075 0.925 15 C -0.154 4.154 16 C -0.011 4.011 17 N -0.341 5.341 18 C 0.303 3.697 19 O -0.474 6.474 20 C -0.140 4.140 21 C -0.114 4.114 22 C -0.170 4.170 23 C -0.213 4.213 24 C -0.164 4.164 25 C -0.121 4.121 26 C 0.014 3.986 27 C 0.027 3.973 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.012 0.988 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.384 -21.371 1.051 23.783 hybrid contribution -0.383 2.254 0.429 2.326 sum 10.001 -19.117 1.479 21.626 Atomic orbital electron populations 1.70170 1.06648 1.25922 1.55434 1.25848 0.96149 1.01549 1.00893 0.85200 0.78632 0.79734 0.76888 1.19022 1.20929 1.22286 1.19479 0.92320 0.84851 1.42320 0.90834 1.44359 1.31771 1.02011 1.54974 1.21331 0.87345 0.98356 0.91073 1.23168 1.00613 0.84050 0.94673 1.87743 1.39927 1.32647 1.70801 1.22537 0.86152 0.96802 0.92357 0.92482 1.21886 0.97357 0.94622 1.01547 1.22082 0.96925 0.91406 0.90722 1.48376 1.63795 1.11903 1.10018 1.21431 0.76280 0.91106 0.80842 1.90675 1.56654 1.49172 1.50932 1.22739 1.01528 0.90157 0.99612 1.22372 0.94973 0.96547 0.97477 1.22057 1.02969 0.92342 0.99666 1.22902 1.00540 1.03321 0.94533 1.22911 0.98415 0.93667 1.01440 1.22333 1.01087 0.94691 0.93999 1.21160 0.94335 0.84175 0.98947 1.21354 0.93782 0.87883 0.94280 0.98039 0.93945 0.90988 0.98773 0.93134 0.87314 0.86581 0.91469 0.89005 0.85289 0.83252 0.91748 0.87502 0.88843 0.88252 0.86787 0.87595 0.89849 0.91630 0.92650 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.39 11.06 21.65 0.24 -56.15 16 2 C -0.05 -2.79 5.01 84.86 0.43 -2.36 16 3 Si 0.97 45.93 29.58 68.60 2.03 47.96 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 7 C -0.26 -14.53 8.88 84.03 0.75 -13.79 16 8 H 0.07 4.01 6.27 -2.91 -0.02 3.99 16 9 N -0.61 -31.49 3.04 -674.94 -2.05 -33.54 16 10 C 0.14 7.21 5.41 86.28 0.47 7.67 16 11 C 0.05 2.03 6.95 72.05 0.50 2.53 16 12 O -0.39 -14.73 10.48 -148.98 -1.56 -16.29 16 13 C 0.08 2.78 2.49 30.66 0.08 2.86 16 14 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 15 C -0.12 -2.68 5.82 30.64 0.18 -2.51 16 16 C 0.11 2.13 6.28 86.44 0.54 2.67 16 17 N -0.61 -18.57 2.99 -819.57 -2.45 -21.02 16 18 C 0.51 16.29 7.22 87.66 0.63 16.93 16 19 O -0.59 -25.49 15.29 -3.02 -0.05 -25.54 16 20 C -0.12 -2.40 2.72 -10.94 -0.03 -2.43 16 21 C -0.08 -1.33 7.19 30.98 0.22 -1.11 16 22 C -0.17 -2.76 3.08 -52.37 -0.16 -2.92 16 23 C -0.18 -2.54 10.53 30.46 0.32 -2.22 16 24 C -0.13 -1.39 10.53 30.46 0.32 -1.07 16 25 C -0.08 -1.77 7.43 30.98 0.23 -1.54 16 26 C 0.14 5.62 4.47 86.10 0.38 6.00 16 27 C 0.13 5.90 3.01 44.91 0.14 6.03 16 28 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.07 3.93 6.16 -2.39 -0.01 3.91 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.11 3.57 8.14 -2.38 -0.02 3.56 16 34 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.13 1.49 5.40 -2.39 -0.01 1.48 16 38 H 0.15 1.91 7.49 -2.39 -0.02 1.89 16 39 H 0.06 1.48 8.09 -2.39 -0.02 1.46 16 40 H 0.11 1.21 7.94 -2.38 -0.02 1.19 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 1.84 7.42 -2.39 -0.02 1.82 16 47 H 0.05 2.75 6.81 -2.39 -0.02 2.74 16 48 H 0.07 2.86 7.32 -2.38 -0.02 2.84 16 Total: -1.00 -75.95 367.83 2.10 -73.86 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.94 Total: 15.97 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 4.99 Total: 14.76 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -4.26 Total: -110.71 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -1.61 Total: -41.83 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -75.95 2.10 -73.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074336448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.946 kcal (2) G-P(sol) polarization free energy of solvation -75.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds