Wall clock time and date at job start Tue Mar 31 2020 13:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99589 * 2 1 4 4 H 1.48498 * 109.47213 * 274.99132 * 3 2 1 5 5 H 1.48510 * 109.47205 * 34.98815 * 3 2 1 6 6 H 1.48497 * 109.47097 * 154.98706 * 3 2 1 7 7 C 1.38808 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00183 * 185.06501 * 7 2 1 9 9 N 1.36932 * 119.99944 * 5.06055 * 7 2 1 10 10 C 1.47583 * 134.49473 * 173.48699 * 9 7 2 11 11 C 1.53941 * 86.11761 * 155.35521 * 10 9 7 12 12 O 1.42909 * 113.73974 * 137.95315 * 11 10 9 13 13 C 1.42898 * 113.99712 * 151.92292 * 12 11 10 14 14 C 1.53348 * 109.41690 * 270.12323 * 13 12 11 15 15 C 1.53198 * 109.14662 * 178.67824 * 14 13 12 16 16 N 1.46921 * 108.89245 * 54.58043 * 15 14 13 17 17 C 1.34782 * 120.62825 * 126.34547 * 16 15 14 18 18 O 1.21278 * 120.00122 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99735 * 179.97438 * 17 16 15 20 20 H 1.09000 * 115.55322 * 34.32735 * 19 17 16 21 21 C 1.53001 * 117.49722 * 248.61630 * 19 17 16 22 22 C 1.52995 * 117.50055 * 179.97438 * 19 17 16 23 23 C 1.52993 * 138.58869 * 336.60411 * 22 19 17 24 24 C 1.52993 * 138.59274 * 238.38592 * 22 19 17 25 25 C 1.46924 * 118.74120 * 306.31570 * 16 15 14 26 26 C 1.53041 * 109.45564 * 149.99995 * 13 12 11 27 27 C 1.47818 * 134.45677 * 353.34362 * 9 7 2 28 28 H 0.96993 * 120.00122 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.76969 * 41.05129 * 10 9 7 30 30 H 1.09007 * 113.76518 * 269.65675 * 10 9 7 31 31 H 1.08998 * 113.74130 * 269.14645 * 11 10 9 32 32 H 1.08999 * 109.46486 * 30.03019 * 13 12 11 33 33 H 1.08998 * 109.68497 * 58.71923 * 14 13 12 34 34 H 1.09003 * 109.47817 * 298.51551 * 14 13 12 35 35 H 1.09002 * 109.58559 * 294.71636 * 15 14 13 36 36 H 1.09000 * 109.58248 * 174.44068 * 15 14 13 37 37 H 1.08994 * 117.49889 * 359.97438 * 21 19 17 38 38 H 1.09000 * 117.49557 * 145.02569 * 21 19 17 39 39 H 1.09003 * 117.49832 * 336.58936 * 23 22 19 40 40 H 1.08992 * 117.50427 * 121.60991 * 23 22 19 41 41 H 1.09007 * 117.49331 * 238.38412 * 24 22 19 42 42 H 1.08996 * 117.49800 * 23.39892 * 24 22 19 43 43 H 1.09002 * 109.58853 * 173.39395 * 25 16 15 44 44 H 1.08996 * 109.58614 * 293.68690 * 25 16 15 45 45 H 1.09001 * 109.50377 * 61.43449 * 26 13 12 46 46 H 1.08999 * 109.50186 * 301.33364 * 26 13 12 47 47 H 1.08998 * 113.76193 * 90.38392 * 27 9 7 48 48 H 1.09000 * 113.83635 * 318.92374 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5042 2.6200 0.8029 6 1 3.5964 1.4122 0.5920 7 6 2.0104 -1.2021 -0.0005 8 1 3.0872 -1.2039 0.0820 9 7 1.3298 -2.3856 -0.1057 10 6 1.7289 -3.7982 -0.2581 11 6 0.3713 -4.1419 0.3811 12 8 -0.3002 -5.2357 -0.2475 13 6 -1.1657 -5.9650 0.6248 14 6 -0.3787 -7.0991 1.2926 15 6 -1.3036 -7.8561 2.2509 16 7 -2.4942 -8.2989 1.5126 17 6 -2.8673 -9.5940 1.5245 18 8 -2.2180 -10.4064 2.1484 19 6 -4.0913 -10.0325 0.7626 20 1 -4.2817 -9.4989 -0.1686 21 6 -5.3038 -10.4892 1.5763 22 6 -4.4622 -11.5159 0.8149 23 6 -3.7805 -12.8606 1.0752 24 6 -4.6733 -12.6808 -0.1542 25 6 -3.2707 -7.3031 0.7615 26 6 -2.3265 -6.5512 -0.1821 27 6 -0.1000 -2.7609 -0.1093 28 1 -0.4850 0.8400 0.0004 29 1 2.5862 -4.0809 0.3527 30 1 1.8198 -4.1195 -1.2958 31 1 0.4079 -4.2332 1.4666 32 1 -1.5574 -5.2957 1.3907 33 1 0.4615 -6.6845 1.8495 34 1 -0.0078 -7.7828 0.5289 35 1 -1.6031 -7.1975 3.0662 36 1 -0.7807 -8.7230 2.6549 37 1 -5.2161 -10.4729 2.6625 38 1 -6.2923 -10.2560 1.1804 39 1 -2.7045 -12.9194 0.9116 40 1 -4.1659 -13.4704 1.8922 41 1 -5.6462 -13.1723 -0.1459 42 1 -4.1847 -12.6212 -1.1267 43 1 -4.0442 -7.8052 0.1806 44 1 -3.7326 -6.6009 1.4554 45 1 -1.9373 -7.2399 -0.9319 46 1 -2.8706 -5.7455 -0.6749 47 1 -0.5473 -2.7768 -1.1031 48 1 -0.7000 -2.2169 0.6201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093577389.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:25 Heat of formation + Delta-G solvation = 41.214205 kcal Electronic energy + Delta-G solvation = -26821.739196 eV Core-core repulsion = 23073.869269 eV Total energy + Delta-G solvation = -3747.869928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61039 -38.97873 -38.03448 -37.05360 -35.43229 -33.13392 -32.19615 -31.40836 -31.27387 -27.47593 -25.66806 -24.80681 -24.18626 -22.98937 -22.80203 -22.69994 -20.99191 -19.96865 -19.42776 -18.63468 -17.68979 -16.84883 -16.39985 -16.12403 -15.64516 -15.31401 -15.02815 -14.92324 -14.56042 -14.40379 -14.29557 -13.80073 -13.70278 -13.30598 -12.82970 -12.72246 -12.61209 -12.10266 -11.94607 -11.89124 -11.77061 -11.71226 -11.40015 -11.21071 -11.16978 -10.88802 -10.70762 -10.55429 -10.49063 -10.44134 -10.32954 -10.23289 -9.99629 -9.84367 -9.54550 -8.88030 -8.80869 -8.73122 -6.90165 -5.80867 -3.12686 2.25025 2.65440 3.36379 3.37928 3.42323 3.42760 3.44951 3.90214 3.94949 4.25159 4.42661 4.46755 4.56188 4.68236 4.79566 4.89978 5.06118 5.11065 5.12209 5.17244 5.20056 5.27348 5.30504 5.34164 5.37115 5.38260 5.43365 5.51602 5.57715 5.61476 5.62999 5.66802 5.72091 5.79112 5.86757 5.89849 6.05540 6.20259 6.34705 6.41434 6.62510 6.65657 7.09415 7.17458 7.20865 7.51137 7.86464 7.95374 7.98591 9.01610 9.67461 10.57239 11.37058 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.039193 B = 0.002083 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.247338 B =13440.666415 C =13665.605545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.121 3.879 11 C 0.034 3.966 12 O -0.373 6.373 13 C 0.091 3.909 14 C -0.155 4.155 15 C 0.114 3.886 16 N -0.608 5.608 17 C 0.544 3.456 18 O -0.538 6.538 19 C -0.143 4.143 20 H 0.127 0.873 21 C -0.099 4.099 22 C -0.203 4.203 23 C -0.113 4.113 24 C -0.130 4.130 25 C 0.109 3.891 26 C -0.133 4.133 27 C 0.152 3.848 28 H 0.254 0.746 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.036 0.964 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 -22.490 2.384 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.350 4.350 8 H 0.100 0.900 9 N -0.337 5.337 10 C -0.005 4.005 11 C -0.025 4.025 12 O -0.291 6.291 13 C 0.033 3.967 14 C -0.194 4.194 15 C -0.008 4.008 16 N -0.342 5.342 17 C 0.332 3.668 18 O -0.414 6.414 19 C -0.164 4.164 20 H 0.144 0.856 21 C -0.136 4.136 22 C -0.203 4.203 23 C -0.150 4.150 24 C -0.166 4.166 25 C -0.014 4.014 26 C -0.171 4.171 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.053 0.947 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.007 -22.618 2.563 25.736 hybrid contribution 0.491 1.307 -0.014 1.396 sum -11.517 -21.311 2.549 24.358 Atomic orbital electron populations 1.69843 1.05087 1.25443 1.56195 1.24849 0.95729 0.97634 1.02235 0.86096 0.78724 0.83381 0.77561 1.21551 1.21669 1.20488 1.18995 0.90745 0.81715 1.43516 0.90033 1.45678 1.02542 1.00701 1.84828 1.22728 0.93945 0.86008 0.97866 1.25045 0.94636 0.86412 0.96369 1.87954 1.59791 1.44591 1.36750 1.22011 0.90179 0.92179 0.92352 1.22523 0.98787 0.98513 0.99546 1.21597 0.85653 0.99722 0.93871 1.48102 1.28220 1.07388 1.50483 1.19668 0.85020 0.81521 0.80564 1.90679 1.54960 1.51903 1.43905 1.22017 0.95962 0.96463 1.01968 0.85561 1.22664 0.93875 0.98479 0.98598 1.21173 1.05853 0.86566 1.06731 1.22594 0.99018 0.94633 0.98763 1.22771 1.01452 0.97655 0.94748 1.21828 0.93864 0.91063 0.94619 1.21993 0.96179 1.00544 0.98372 1.22688 0.88066 0.87939 0.98626 0.93583 0.93664 0.94019 0.90241 0.92006 0.90230 0.90861 0.91273 0.88848 0.88091 0.87482 0.88198 0.88552 0.88303 0.88479 0.89136 0.90720 0.90772 0.89492 0.94661 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.37 11.51 55.49 0.64 -26.73 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16 8 H 0.08 2.23 7.83 -52.49 -0.41 1.81 16 9 N -0.61 -16.02 3.70 -177.98 -0.66 -16.68 16 10 C 0.12 2.58 8.77 -2.97 -0.03 2.55 16 11 C 0.03 0.65 4.29 -25.81 -0.11 0.54 16 12 O -0.37 -6.38 10.01 -35.23 -0.35 -6.74 16 13 C 0.09 1.19 2.45 -26.53 -0.07 1.13 16 14 C -0.16 -1.85 5.73 -26.45 -0.15 -2.00 16 15 C 0.11 1.24 6.42 -3.71 -0.02 1.22 16 16 N -0.61 -6.41 2.97 -172.76 -0.51 -6.92 16 17 C 0.54 6.37 7.48 -10.98 -0.08 6.29 16 18 O -0.54 -8.08 15.66 5.56 0.09 -8.00 16 19 C -0.14 -1.27 5.12 -91.78 -0.47 -1.74 16 20 H 0.13 0.89 6.56 -51.93 -0.34 0.54 16 21 C -0.10 -0.73 10.24 -26.71 -0.27 -1.00 16 22 C -0.20 -1.78 5.06 -154.50 -0.78 -2.56 16 23 C -0.11 -0.98 10.16 -26.74 -0.27 -1.25 16 24 C -0.13 -0.90 10.53 -26.74 -0.28 -1.18 16 25 C 0.11 0.92 6.35 -3.71 -0.02 0.90 16 26 C -0.13 -1.40 5.73 -26.61 -0.15 -1.55 16 27 C 0.15 3.66 7.27 -2.84 -0.02 3.64 16 28 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.45 7.80 -51.93 -0.41 1.04 16 32 H 0.06 0.80 7.74 -51.93 -0.40 0.40 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.57 5.51 -51.93 -0.29 0.29 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.07 1.76 7.37 -51.93 -0.38 1.38 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -33.70 386.79 -11.05 -44.75 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.07 Total: -0.84 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.99 Total: -1.81 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.53 Total: -50.33 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.27 Total: -14.74 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.70 -11.05 -44.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093577389.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.968 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds