Wall clock time and date at job start Tue Mar 31 2020 13:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99589 * 2 1 4 4 H 1.48498 * 109.47213 * 274.99132 * 3 2 1 5 5 H 1.48510 * 109.47205 * 34.98815 * 3 2 1 6 6 H 1.48497 * 109.47097 * 154.98706 * 3 2 1 7 7 C 1.38808 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00183 * 185.06501 * 7 2 1 9 9 N 1.36932 * 119.99944 * 5.06055 * 7 2 1 10 10 C 1.47583 * 134.49473 * 173.48699 * 9 7 2 11 11 C 1.53941 * 86.11761 * 155.35521 * 10 9 7 12 12 O 1.42909 * 113.73974 * 137.95315 * 11 10 9 13 13 C 1.42898 * 113.99712 * 151.92292 * 12 11 10 14 14 C 1.53348 * 109.41690 * 270.12323 * 13 12 11 15 15 C 1.53198 * 109.14662 * 178.67824 * 14 13 12 16 16 N 1.46921 * 108.89245 * 54.58043 * 15 14 13 17 17 C 1.34782 * 120.62825 * 126.34547 * 16 15 14 18 18 O 1.21278 * 120.00122 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99735 * 179.97438 * 17 16 15 20 20 H 1.09000 * 115.55322 * 34.32735 * 19 17 16 21 21 C 1.53001 * 117.49722 * 248.61630 * 19 17 16 22 22 C 1.52995 * 117.50055 * 179.97438 * 19 17 16 23 23 C 1.52993 * 138.58869 * 336.60411 * 22 19 17 24 24 C 1.52993 * 138.59274 * 238.38592 * 22 19 17 25 25 C 1.46924 * 118.74120 * 306.31570 * 16 15 14 26 26 C 1.53041 * 109.45564 * 149.99995 * 13 12 11 27 27 C 1.47818 * 134.45677 * 353.34362 * 9 7 2 28 28 H 0.96993 * 120.00122 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.76969 * 41.05129 * 10 9 7 30 30 H 1.09007 * 113.76518 * 269.65675 * 10 9 7 31 31 H 1.08998 * 113.74130 * 269.14645 * 11 10 9 32 32 H 1.08999 * 109.46486 * 30.03019 * 13 12 11 33 33 H 1.08998 * 109.68497 * 58.71923 * 14 13 12 34 34 H 1.09003 * 109.47817 * 298.51551 * 14 13 12 35 35 H 1.09002 * 109.58559 * 294.71636 * 15 14 13 36 36 H 1.09000 * 109.58248 * 174.44068 * 15 14 13 37 37 H 1.08994 * 117.49889 * 359.97438 * 21 19 17 38 38 H 1.09000 * 117.49557 * 145.02569 * 21 19 17 39 39 H 1.09003 * 117.49832 * 336.58936 * 23 22 19 40 40 H 1.08992 * 117.50427 * 121.60991 * 23 22 19 41 41 H 1.09007 * 117.49331 * 238.38412 * 24 22 19 42 42 H 1.08996 * 117.49800 * 23.39892 * 24 22 19 43 43 H 1.09002 * 109.58853 * 173.39395 * 25 16 15 44 44 H 1.08996 * 109.58614 * 293.68690 * 25 16 15 45 45 H 1.09001 * 109.50377 * 61.43449 * 26 13 12 46 46 H 1.08999 * 109.50186 * 301.33364 * 26 13 12 47 47 H 1.08998 * 113.76193 * 90.38392 * 27 9 7 48 48 H 1.09000 * 113.83635 * 318.92374 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5042 2.6200 0.8029 6 1 3.5964 1.4122 0.5920 7 6 2.0104 -1.2021 -0.0005 8 1 3.0872 -1.2039 0.0820 9 7 1.3298 -2.3856 -0.1057 10 6 1.7289 -3.7982 -0.2581 11 6 0.3713 -4.1419 0.3811 12 8 -0.3002 -5.2357 -0.2475 13 6 -1.1657 -5.9650 0.6248 14 6 -0.3787 -7.0991 1.2926 15 6 -1.3036 -7.8561 2.2509 16 7 -2.4942 -8.2989 1.5126 17 6 -2.8673 -9.5940 1.5245 18 8 -2.2180 -10.4064 2.1484 19 6 -4.0913 -10.0325 0.7626 20 1 -4.2817 -9.4989 -0.1686 21 6 -5.3038 -10.4892 1.5763 22 6 -4.4622 -11.5159 0.8149 23 6 -3.7805 -12.8606 1.0752 24 6 -4.6733 -12.6808 -0.1542 25 6 -3.2707 -7.3031 0.7615 26 6 -2.3265 -6.5512 -0.1821 27 6 -0.1000 -2.7609 -0.1093 28 1 -0.4850 0.8400 0.0004 29 1 2.5862 -4.0809 0.3527 30 1 1.8198 -4.1195 -1.2958 31 1 0.4079 -4.2332 1.4666 32 1 -1.5574 -5.2957 1.3907 33 1 0.4615 -6.6845 1.8495 34 1 -0.0078 -7.7828 0.5289 35 1 -1.6031 -7.1975 3.0662 36 1 -0.7807 -8.7230 2.6549 37 1 -5.2161 -10.4729 2.6625 38 1 -6.2923 -10.2560 1.1804 39 1 -2.7045 -12.9194 0.9116 40 1 -4.1659 -13.4704 1.8922 41 1 -5.6462 -13.1723 -0.1459 42 1 -4.1847 -12.6212 -1.1267 43 1 -4.0442 -7.8052 0.1806 44 1 -3.7326 -6.6009 1.4554 45 1 -1.9373 -7.2399 -0.9319 46 1 -2.8706 -5.7455 -0.6749 47 1 -0.5473 -2.7768 -1.1031 48 1 -0.7000 -2.2169 0.6201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093577389.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:24 Heat of formation + Delta-G solvation = 21.515475 kcal Electronic energy + Delta-G solvation = -26822.593397 eV Core-core repulsion = 23073.869269 eV Total energy + Delta-G solvation = -3748.724129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46999 -40.30119 -39.08058 -38.10696 -36.75156 -34.19952 -33.77216 -32.52874 -32.12927 -29.44688 -26.65529 -26.56276 -25.30010 -24.43777 -23.82277 -23.27945 -21.85860 -21.24066 -20.65586 -19.42324 -18.82352 -18.55189 -17.79926 -17.02300 -16.93527 -16.42939 -16.03159 -15.88601 -15.79205 -15.44656 -15.37128 -15.20328 -14.84045 -14.60849 -14.20067 -13.79248 -13.46366 -13.39871 -13.25995 -13.23013 -12.88552 -12.84061 -12.73453 -12.63736 -12.36772 -12.27635 -12.24444 -11.94356 -11.78172 -11.50964 -11.40193 -11.16932 -11.04225 -10.92012 -10.89558 -10.70156 -10.22577 -9.75108 -8.97745 -7.95564 -5.29645 1.42307 1.44961 1.47481 1.56377 1.86812 2.40739 2.68033 2.77100 2.80749 3.23859 3.32030 3.44109 3.53142 3.73368 3.75283 3.84488 3.93760 4.02409 4.06372 4.12969 4.16176 4.29540 4.39035 4.44477 4.52433 4.59610 4.65522 4.73736 4.75585 4.77228 4.79833 4.81529 4.84113 4.88790 4.92829 4.97761 5.02036 5.04536 5.15585 5.19335 5.21108 5.27518 5.35525 5.47191 5.49965 5.86594 6.35040 6.44603 6.87456 7.12330 7.55304 8.51116 9.22381 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.039193 B = 0.002083 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.247338 B =13440.666415 C =13665.605545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.982 3.018 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.238 4.238 8 H 0.087 0.913 9 N -0.639 5.639 10 C 0.119 3.881 11 C 0.071 3.929 12 O -0.382 6.382 13 C 0.082 3.918 14 C -0.146 4.146 15 C 0.116 3.884 16 N -0.608 5.608 17 C 0.537 3.463 18 O -0.580 6.580 19 C -0.150 4.150 20 H 0.149 0.851 21 C -0.082 4.082 22 C -0.228 4.228 23 C -0.133 4.133 24 C -0.108 4.108 25 C 0.112 3.888 26 C -0.128 4.128 27 C 0.150 3.850 28 H 0.251 0.749 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.016 0.984 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 -23.033 2.282 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.810 3.190 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.189 1.189 7 C -0.366 4.366 8 H 0.105 0.895 9 N -0.368 5.368 10 C -0.006 4.006 11 C 0.012 3.988 12 O -0.300 6.300 13 C 0.024 3.976 14 C -0.184 4.184 15 C -0.006 4.006 16 N -0.340 5.340 17 C 0.327 3.673 18 O -0.461 6.461 19 C -0.170 4.170 20 H 0.167 0.833 21 C -0.119 4.119 22 C -0.229 4.229 23 C -0.170 4.170 24 C -0.144 4.144 25 C -0.009 4.009 26 C -0.166 4.166 27 C 0.024 3.976 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.154 0.846 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.120 0.880 43 H 0.136 0.864 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.034 0.966 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.090 -23.183 2.450 26.735 hybrid contribution 0.838 1.386 0.009 1.620 sum -12.251 -21.796 2.458 25.124 Atomic orbital electron populations 1.70022 1.06553 1.25889 1.57528 1.25736 0.96675 1.01101 1.02502 0.85011 0.77955 0.78776 0.77295 1.21504 1.21808 1.18918 1.19412 0.91355 0.83001 1.42835 0.89506 1.46052 1.03714 1.01972 1.85046 1.22864 0.95810 0.83503 0.98444 1.24400 0.92770 0.84942 0.96723 1.87938 1.60373 1.43817 1.37841 1.22337 0.90464 0.92190 0.92566 1.22406 0.98869 0.97842 0.99294 1.21522 0.85841 0.99238 0.94021 1.48210 1.28025 1.07610 1.50192 1.20245 0.85541 0.81339 0.80158 1.90659 1.56520 1.53018 1.45855 1.22080 0.95282 0.96882 1.02785 0.83339 1.22765 0.94458 0.96643 0.98031 1.21458 1.06654 0.86672 1.08090 1.22581 0.98267 0.95631 1.00517 1.22844 1.01711 0.95877 0.93972 1.21986 0.93482 0.90849 0.94622 1.21977 0.95561 1.00628 0.98436 1.22604 0.87085 0.90836 0.97090 0.94044 0.91696 0.93894 0.88639 0.91523 0.90194 0.91996 0.89899 0.90171 0.88986 0.84570 0.90299 0.88058 0.86288 0.88042 0.86356 0.89207 0.91312 0.89056 0.96639 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.77 11.51 21.65 0.25 -57.52 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.98 45.75 29.56 68.60 2.03 47.78 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.24 -13.58 10.69 84.03 0.90 -12.68 16 8 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 9 N -0.64 -33.81 3.70 -720.82 -2.67 -36.47 16 10 C 0.12 4.99 8.77 86.48 0.76 5.75 16 11 C 0.07 2.67 4.29 31.25 0.13 2.81 16 12 O -0.38 -12.65 10.01 -148.98 -1.49 -14.15 16 13 C 0.08 2.02 2.45 30.72 0.08 2.10 16 14 C -0.15 -3.31 5.73 30.78 0.18 -3.13 16 15 C 0.12 2.43 6.42 86.37 0.55 2.99 16 16 N -0.61 -11.84 2.97 -818.89 -2.43 -14.28 16 17 C 0.54 12.07 7.48 87.66 0.66 12.72 16 18 O -0.58 -17.71 15.66 -3.02 -0.05 -17.76 16 19 C -0.15 -2.32 5.12 -11.54 -0.06 -2.38 16 20 H 0.15 1.57 6.56 -2.39 -0.02 1.55 16 21 C -0.08 -1.00 10.24 30.61 0.31 -0.69 16 22 C -0.23 -3.64 5.06 -52.18 -0.26 -3.90 16 23 C -0.13 -2.27 10.16 30.59 0.31 -1.96 16 24 C -0.11 -1.28 10.53 30.59 0.32 -0.96 16 25 C 0.11 1.58 6.35 86.37 0.55 2.13 16 26 C -0.13 -2.45 5.73 30.68 0.18 -2.27 16 27 C 0.15 7.31 7.27 86.44 0.63 7.94 16 28 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.10 3.34 7.80 -2.39 -0.02 3.32 16 32 H 0.07 1.61 7.74 -2.39 -0.02 1.59 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.92 7.00 -2.39 -0.02 1.91 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.12 1.05 5.51 -2.39 -0.01 1.03 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 48 H 0.04 2.29 7.37 -2.39 -0.02 2.27 16 Total: -1.00 -74.37 386.79 2.27 -72.11 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.94 Total: 15.21 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 5.70 Total: 5.08 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -4.85 Total: -108.27 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.54 Total: -31.91 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -74.37 2.27 -72.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093577389.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.621 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds