Wall clock time and date at job start Tue Mar 31 2020 13:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00123 * 2 1 4 4 H 1.48503 * 109.47060 * 174.65674 * 3 2 1 5 5 H 1.48502 * 109.46982 * 294.65347 * 3 2 1 6 6 H 1.48504 * 109.47392 * 54.65577 * 3 2 1 7 7 C 1.37882 * 119.99696 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84831 * 348.88573 * 7 2 1 9 9 C 1.53233 * 108.53334 * 231.32383 * 8 7 2 10 10 C 1.52957 * 109.40295 * 305.37511 * 9 8 7 11 11 H 1.09001 * 109.35446 * 303.52657 * 10 9 8 12 12 N 1.46506 * 109.41040 * 183.70789 * 10 9 8 13 13 C 1.34771 * 120.00245 * 84.64539 * 12 10 9 14 14 O 1.21282 * 120.00039 * 0.02562 * 13 12 10 15 15 C 1.50701 * 119.99847 * 180.27265 * 13 12 10 16 16 H 1.08997 * 110.85791 * 59.02425 * 15 13 12 17 17 C 1.54631 * 110.97191 * 295.23270 * 15 13 12 18 18 C 1.51332 * 104.16809 * 217.10797 * 17 15 13 19 19 O 1.21287 * 124.92935 * 196.22171 * 18 17 15 20 20 N 1.34421 * 110.13244 * 16.20668 * 18 17 15 21 21 C 1.46493 * 124.35307 * 180.46195 * 20 18 17 22 22 C 1.53005 * 109.46827 * 269.97128 * 21 20 18 23 23 C 1.52994 * 117.49933 * 243.61939 * 22 21 20 24 24 C 1.52996 * 60.00502 * 252.51238 * 23 22 21 25 25 C 1.46761 * 111.29775 * 0.43372 * 20 18 17 26 26 C 1.52958 * 109.82041 * 63.59823 * 10 9 8 27 27 C 1.51268 * 120.84592 * 168.86018 * 7 2 1 28 28 H 0.97001 * 119.99791 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.62923 * 351.03683 * 8 7 2 30 30 H 1.08997 * 109.62525 * 111.42378 * 8 7 2 31 31 H 1.09001 * 109.47913 * 185.39347 * 9 8 7 32 32 H 1.09005 * 109.48147 * 65.35205 * 9 8 7 33 33 H 0.97007 * 119.99371 * 264.64106 * 12 10 9 34 34 H 1.09001 * 110.48572 * 335.76565 * 17 15 13 35 35 H 1.09007 * 110.48175 * 98.40552 * 17 15 13 36 36 H 1.09004 * 109.47648 * 29.96720 * 21 20 18 37 37 H 1.08996 * 109.47861 * 149.97165 * 21 20 18 38 38 H 1.09004 * 115.54727 * 29.33369 * 22 21 20 39 39 H 1.08998 * 117.49823 * 0.02562 * 23 22 21 40 40 H 1.09002 * 117.50045 * 145.02360 * 23 22 21 41 41 H 1.08998 * 117.50094 * 252.51377 * 24 23 22 42 42 H 1.08997 * 117.50081 * 107.48819 * 24 23 22 43 43 H 1.09005 * 110.24676 * 223.98678 * 25 20 18 44 44 H 1.09002 * 110.32090 * 102.02634 * 25 20 18 45 45 H 1.09008 * 109.48183 * 56.37916 * 26 10 9 46 46 H 1.08996 * 109.48151 * 176.41893 * 26 10 9 47 47 H 1.08994 * 109.62800 * 8.96091 * 27 7 2 48 48 H 1.08997 * 109.62564 * 248.38605 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7040 1.3493 0.1304 5 1 1.9909 2.3383 -1.2725 6 1 1.7954 2.4514 1.1420 7 6 2.0046 -1.1941 0.0005 8 6 1.2887 -2.5029 0.2515 9 6 2.0329 -3.2612 1.3556 10 6 3.5042 -3.4121 0.9655 11 1 3.5723 -3.9120 -0.0007 12 7 4.1967 -4.2131 1.9781 13 6 4.1665 -5.5587 1.9094 14 8 3.5664 -6.1066 1.0090 15 6 4.8737 -6.3826 2.9544 16 1 4.4851 -6.1643 3.9491 17 6 6.4023 -6.1572 2.8958 18 6 6.9894 -7.5205 3.1906 19 8 8.1404 -7.7260 3.5129 20 7 6.0498 -8.4704 3.0436 21 6 6.2790 -9.9007 3.2619 22 6 6.7288 -10.5509 1.9519 23 6 5.8143 -11.6143 1.3406 24 6 7.1332 -12.0259 1.9977 25 6 4.7644 -7.8904 2.6368 26 6 4.1600 -2.0334 0.8720 27 6 3.4959 -1.2289 -0.2504 28 1 -0.4850 0.8401 -0.0004 29 1 0.2650 -2.3052 0.5692 30 1 1.2803 -3.0967 -0.6625 31 1 1.5874 -4.2478 1.4827 32 1 1.9599 -2.7058 2.2908 33 1 4.6770 -3.7748 2.6980 34 1 6.7004 -5.8201 1.9030 35 1 6.7109 -5.4364 3.6531 36 1 7.0531 -10.0335 4.0179 37 1 5.3554 -10.3692 3.6016 38 1 7.2733 -9.9007 1.2671 39 1 4.8920 -11.8504 1.8714 40 1 5.7568 -11.6638 0.2533 41 1 7.9435 -12.3461 1.3427 42 1 7.0789 -12.5329 2.9610 43 1 3.9510 -8.3382 3.2078 44 1 4.6024 -8.0403 1.5694 45 1 4.0366 -1.5071 1.8186 46 1 5.2220 -2.1499 0.6564 47 1 3.8901 -0.2128 -0.2551 48 1 3.6947 -1.7062 -1.2099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182458607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:49 Heat of formation + Delta-G solvation = -59.813386 kcal Electronic energy + Delta-G solvation = -27079.727224 eV Core-core repulsion = 23327.476412 eV Total energy + Delta-G solvation = -3752.250813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00813 -39.38613 -37.71951 -37.02170 -36.10788 -33.85599 -32.87658 -31.50343 -29.68687 -28.08200 -27.73189 -26.86133 -23.59304 -22.71694 -21.87700 -21.57329 -21.39041 -20.00711 -19.68139 -19.40570 -17.63976 -17.16174 -16.34824 -15.90738 -15.84224 -15.41075 -15.30975 -14.78149 -14.49755 -14.45659 -13.81585 -13.64366 -13.34648 -13.26145 -13.06909 -12.99982 -12.81354 -12.29233 -12.14338 -12.01104 -11.87937 -11.83890 -11.56453 -11.54492 -11.11358 -10.92060 -10.83980 -10.78212 -10.33436 -10.31856 -10.13949 -9.97773 -9.66513 -9.42431 -9.14031 -8.97885 -8.88864 -8.45850 -8.33930 -6.14574 -4.03929 2.33065 2.60615 2.73143 3.22486 3.30704 3.32824 3.33772 3.47444 4.02389 4.12629 4.34371 4.36428 4.53933 4.59902 4.62471 4.69090 4.89197 5.03033 5.12358 5.13568 5.24025 5.28722 5.31749 5.35812 5.49230 5.55421 5.62640 5.71784 5.76399 5.81596 5.82052 6.10646 6.26132 6.41783 6.43823 6.64413 6.72271 6.74035 6.82226 7.01175 7.05260 7.17948 7.36683 7.60004 7.71635 7.77237 7.83130 7.90988 8.35459 8.40403 8.93306 9.50736 10.94888 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.028203 B = 0.002428 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.554911 B =11530.738400 C =12050.687443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.490 4.490 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.153 3.847 11 H 0.079 0.921 12 N -0.719 5.719 13 C 0.520 3.480 14 O -0.536 6.536 15 C -0.125 4.125 16 H 0.117 0.883 17 C -0.145 4.145 18 C 0.521 3.479 19 O -0.531 6.531 20 N -0.616 5.616 21 C 0.158 3.842 22 C -0.172 4.172 23 C -0.177 4.177 24 C -0.174 4.174 25 C 0.118 3.882 26 C -0.114 4.114 27 C -0.022 4.022 28 H 0.264 0.736 29 H 0.054 0.946 30 H 0.006 0.994 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.395 0.605 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.055 0.945 46 H 0.037 0.963 47 H 0.044 0.956 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.276 -17.206 8.199 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.509 4.509 8 C -0.025 4.025 9 C -0.153 4.153 10 C 0.051 3.949 11 H 0.097 0.903 12 N -0.368 5.368 13 C 0.304 3.696 14 O -0.413 6.413 15 C -0.147 4.147 16 H 0.135 0.865 17 C -0.185 4.185 18 C 0.308 3.692 19 O -0.408 6.408 20 N -0.349 5.349 21 C 0.037 3.963 22 C -0.191 4.191 23 C -0.214 4.214 24 C -0.212 4.212 25 C -0.005 4.005 26 C -0.152 4.152 27 C -0.060 4.060 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.228 0.772 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 11.273 -17.655 7.725 22.326 hybrid contribution 0.489 1.158 0.384 1.314 sum 11.762 -16.497 8.109 21.823 Atomic orbital electron populations 1.69910 1.06254 1.26865 1.49150 1.24863 0.94627 0.98584 0.94589 0.86759 0.80994 0.83764 0.77837 1.18118 1.20922 1.21248 1.20030 0.90883 0.92019 1.47967 1.19319 0.97259 0.93347 0.92539 1.21975 0.93837 0.98470 1.01029 1.21104 0.92650 0.90682 0.90481 0.90295 1.46401 1.54003 1.05675 1.30727 1.19935 0.80786 0.83009 0.85827 1.90724 1.43598 1.71447 1.35517 1.22283 0.95764 0.95707 1.00987 0.86544 1.22358 0.93575 0.96705 1.05863 1.20811 0.85104 0.87284 0.75969 1.90732 1.17225 1.84942 1.47888 1.48277 1.11927 1.06597 1.68143 1.20934 1.01587 0.78421 0.95400 1.22775 1.04438 0.91965 0.99960 1.23068 0.94448 1.03170 1.00710 1.22935 0.98851 0.96645 1.02765 1.22001 0.85022 0.90735 1.02746 1.21875 0.96905 0.94704 1.01728 1.19913 0.96099 0.96439 0.93540 0.92644 0.92718 0.97524 0.94633 0.93279 0.77204 0.87177 0.87111 0.89505 0.90002 0.87601 0.88566 0.88708 0.88670 0.88611 0.89766 0.88790 0.92594 0.94420 0.93764 0.96232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.02 12.82 55.43 0.71 -24.31 16 2 C 0.08 2.03 5.44 -17.81 -0.10 1.93 16 3 Si 0.88 20.05 27.95 -169.99 -4.75 15.30 16 4 H -0.26 -5.51 5.58 56.52 0.32 -5.19 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.49 -12.46 5.48 -98.92 -0.54 -13.00 16 8 C 0.01 0.33 5.93 -27.48 -0.16 0.17 16 9 C -0.11 -2.36 5.50 -26.63 -0.15 -2.50 16 10 C 0.15 2.77 2.35 -67.97 -0.16 2.61 16 11 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 12 N -0.72 -9.84 5.06 -53.85 -0.27 -10.11 16 13 C 0.52 7.03 7.02 -10.99 -0.08 6.96 16 14 O -0.54 -9.44 15.19 5.56 0.08 -9.36 16 15 C -0.13 -1.17 3.54 -90.14 -0.32 -1.49 16 16 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.14 -1.33 6.41 -26.72 -0.17 -1.50 16 18 C 0.52 6.05 8.02 -10.83 -0.09 5.96 16 19 O -0.53 -8.06 17.60 5.55 0.10 -7.96 16 20 N -0.62 -6.04 2.93 -172.39 -0.51 -6.54 16 21 C 0.16 1.33 6.21 -4.04 -0.03 1.30 16 22 C -0.17 -1.48 6.01 -90.62 -0.54 -2.02 16 23 C -0.18 -1.28 10.18 -26.74 -0.27 -1.56 16 24 C -0.17 -1.22 10.25 -26.73 -0.27 -1.49 16 25 C 0.12 1.11 6.69 -3.12 -0.02 1.09 16 26 C -0.11 -2.07 5.40 -26.63 -0.14 -2.22 16 27 C -0.02 -0.48 5.65 -27.49 -0.16 -0.64 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 29 H 0.05 1.48 7.19 -51.93 -0.37 1.10 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.39 4.20 8.60 -40.82 -0.35 3.85 16 34 H 0.11 1.06 7.89 -51.93 -0.41 0.65 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 37 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 45 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.04 0.97 4.36 -51.93 -0.23 0.74 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -31.62 382.06 -10.15 -41.77 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.07 Total: 1.86 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -3.20 Total: -6.40 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.07 Total: -40.97 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.18 Total: -17.32 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.75 Total: 15.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.62 -10.15 -41.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182458607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.044 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds