Wall clock time and date at job start Tue Mar 31 2020 13:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00165 * 2 1 4 4 H 1.48501 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47125 * 299.99634 * 3 2 1 6 6 H 1.48503 * 109.47367 * 59.99769 * 3 2 1 7 7 C 1.37877 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99751 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.52345 * 59.91760 * 9 7 2 11 11 C 1.53046 * 109.49363 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53471 * 181.31659 * 11 9 7 13 13 C 1.53197 * 109.31209 * 298.63339 * 12 11 9 14 14 N 1.46931 * 108.77300 * 54.63759 * 13 12 11 15 15 C 1.34767 * 120.62957 * 126.37303 * 14 13 12 16 16 O 1.21354 * 120.00233 * 188.66936 * 15 14 13 17 17 C 1.49450 * 120.00267 * 8.66117 * 15 14 13 18 18 O 1.21351 * 119.99893 * 6.77202 * 17 15 14 19 19 N 1.34778 * 120.00054 * 186.76847 * 17 15 14 20 20 C 1.46507 * 119.99950 * 180.27886 * 19 17 15 21 21 C 1.52994 * 109.47160 * 179.72480 * 20 19 17 22 22 C 1.52999 * 115.54953 * 179.90916 * 21 20 19 23 23 C 1.52993 * 117.49803 * 34.33327 * 22 21 20 24 24 C 1.52998 * 117.50091 * 325.66960 * 22 21 20 25 25 C 1.53001 * 117.49798 * 34.20462 * 21 20 19 26 26 C 1.52999 * 60.00188 * 252.50980 * 25 21 20 27 27 C 1.46930 * 118.73745 * 306.64084 * 14 13 12 28 28 H 0.96998 * 119.99795 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.45990 * 61.29712 * 11 9 7 30 30 H 1.08999 * 109.44691 * 301.32583 * 11 9 7 31 31 H 1.08996 * 109.49948 * 178.68342 * 12 11 9 32 32 H 1.09003 * 109.50082 * 58.58389 * 12 11 9 33 33 H 1.09000 * 109.58464 * 294.85247 * 13 12 11 34 34 H 1.08999 * 109.70473 * 174.49506 * 13 12 11 35 35 H 0.96996 * 120.00387 * 359.97438 * 19 17 15 36 36 H 1.09004 * 109.46762 * 299.72067 * 20 19 17 37 37 H 1.08995 * 109.47176 * 59.71939 * 20 19 17 38 38 H 1.09007 * 115.54906 * 180.02562 * 22 21 20 39 39 H 1.09000 * 117.49765 * 359.97438 * 23 22 21 40 40 H 1.09009 * 117.50083 * 145.01778 * 23 22 21 41 41 H 1.08999 * 117.50111 * 214.97602 * 24 22 21 42 42 H 1.08998 * 117.49706 * 359.97438 * 24 22 21 43 43 H 1.09001 * 117.50366 * 359.97438 * 25 21 20 44 44 H 1.09006 * 117.49907 * 145.02110 * 25 21 20 45 45 H 1.09003 * 117.49808 * 252.51756 * 26 25 21 46 46 H 1.09000 * 117.52382 * 107.47927 * 26 25 21 47 47 H 1.08995 * 109.58492 * 173.14681 * 27 14 13 48 48 H 1.09005 * 109.58307 * 293.57109 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6232 -2.5573 -0.8886 11 6 2.2450 -3.6628 0.0005 12 6 1.4810 -4.9885 -0.0326 13 6 0.6057 -5.1003 1.2197 14 7 -0.2529 -3.9109 1.3042 15 6 -1.5892 -4.0360 1.4259 16 8 -2.3009 -3.0571 1.3368 17 6 -2.1948 -5.3803 1.6704 18 8 -1.4804 -6.3382 1.8816 19 7 -3.5343 -5.5286 1.6563 20 6 -4.1281 -6.8452 1.9020 21 6 -5.6529 -6.7371 1.8372 22 6 -6.4175 -8.0411 2.0733 23 6 -5.8217 -9.0391 3.0681 24 6 -5.7790 -9.3361 1.5671 25 6 -6.2487 -5.7384 0.8429 26 6 -6.2914 -5.4421 2.3433 27 6 0.3726 -2.5826 1.2475 28 1 -0.4850 0.8400 -0.0004 29 1 2.8561 -3.6184 0.9019 30 1 2.8870 -3.5917 -0.8774 31 1 2.1896 -5.8163 -0.0562 32 1 0.8507 -5.0231 -0.9212 33 1 1.2396 -5.1570 2.1046 34 1 -0.0141 -5.9946 1.1563 35 1 -4.1054 -4.7629 1.4878 36 1 -3.7812 -7.5474 1.1439 37 1 -3.8305 -7.1996 2.8888 38 1 -7.5038 -7.9642 2.0267 39 1 -4.8848 -8.7669 3.5541 40 1 -6.5160 -9.6190 3.6763 41 1 -6.4452 -10.1112 1.1883 42 1 -4.8144 -9.2589 1.0654 43 1 -5.5544 -5.1580 0.2352 44 1 -7.1856 -6.0103 0.3567 45 1 -7.2565 -5.5192 2.8443 46 1 -5.6253 -4.6673 2.7229 47 1 -0.4009 -1.8162 1.1999 48 1 0.9871 -2.4299 2.1349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261711607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:04 Heat of formation + Delta-G solvation = -8.633257 kcal Electronic energy + Delta-G solvation = -27613.105078 eV Core-core repulsion = 23863.073603 eV Total energy + Delta-G solvation = -3750.031476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70030 -39.53136 -38.08707 -36.85064 -35.93292 -33.95111 -33.14950 -31.73253 -29.77919 -28.09344 -25.63797 -24.98102 -23.80594 -23.01718 -22.30229 -22.25337 -21.79533 -20.29514 -19.31943 -18.55168 -17.29643 -16.86945 -16.37497 -15.96802 -15.70559 -15.57100 -14.99263 -14.62151 -14.52904 -14.31588 -13.79886 -13.62519 -13.45166 -13.17711 -13.10287 -12.87292 -12.58480 -12.16151 -11.90357 -11.82275 -11.76800 -11.49541 -11.40289 -11.36133 -11.07190 -10.99573 -10.68815 -10.44805 -10.32635 -10.30930 -10.13081 -9.88700 -9.74046 -9.22248 -9.15190 -9.10893 -8.59532 -8.45394 -7.82750 -6.01751 -4.10323 1.79348 2.67894 3.13987 3.29166 3.37547 3.40900 3.62479 3.83859 3.94215 4.11088 4.33075 4.41691 4.54341 4.56918 4.70709 4.73348 4.82053 4.99658 5.28376 5.29966 5.42169 5.47447 5.52256 5.54221 5.60203 5.63730 5.66076 5.74336 5.83521 5.86054 5.86742 5.87927 6.10347 6.24507 6.36874 6.52534 6.60556 6.71158 6.84758 6.98623 7.02264 7.17878 7.22448 7.59471 7.82514 7.93249 7.96643 8.15830 8.35152 8.57390 8.94056 9.55362 11.03532 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.002894 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.027421 B = 9674.238288 C =10640.722790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.113 4.113 12 C -0.133 4.133 13 C 0.071 3.929 14 N -0.568 5.568 15 C 0.494 3.506 16 O -0.521 6.521 17 C 0.510 3.490 18 O -0.517 6.517 19 N -0.706 5.706 20 C 0.153 3.847 21 C -0.112 4.112 22 C -0.111 4.111 23 C -0.179 4.179 24 C -0.179 4.179 25 C -0.171 4.171 26 C -0.171 4.171 27 C 0.108 3.892 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.413 0.587 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.124 0.876 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.327 -16.746 4.315 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.051 4.051 14 N -0.300 5.300 15 C 0.274 3.726 16 O -0.399 6.399 17 C 0.292 3.708 18 O -0.395 6.395 19 N -0.362 5.362 20 C 0.030 3.970 21 C -0.112 4.112 22 C -0.129 4.129 23 C -0.216 4.216 24 C -0.215 4.215 25 C -0.208 4.208 26 C -0.208 4.208 27 C -0.012 4.012 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.251 0.749 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.142 0.858 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.328 -16.764 4.424 21.274 hybrid contribution 0.228 1.273 -0.056 1.294 sum -12.100 -15.491 4.368 20.136 Atomic orbital electron populations 1.69890 1.05733 1.26730 1.49519 1.25067 0.94913 0.99310 0.94828 0.86522 0.80078 0.83710 0.77622 1.19772 1.20998 1.20974 1.21125 0.93004 0.90001 1.51581 0.92198 1.18894 0.92672 0.92526 0.93817 0.95225 1.21657 0.98559 0.94242 1.00580 1.21960 0.98626 0.98844 0.97725 1.22692 0.94704 0.89791 0.97913 1.48430 1.04450 1.10165 1.66976 1.19793 0.84014 0.88250 0.80501 1.90774 1.60164 1.39053 1.49867 1.20757 0.82693 0.90110 0.77222 1.90471 1.59319 1.41789 1.47891 1.45947 1.06706 1.12312 1.71230 1.20831 0.89510 0.84503 1.02151 1.21026 0.92958 0.90851 1.06374 1.21537 0.98109 0.88125 1.05173 1.23036 1.03291 1.02683 0.92541 1.23036 1.03025 0.98486 0.96997 1.23132 1.03088 1.01907 0.92636 1.23131 1.02761 0.97877 0.97027 1.22404 0.98888 0.80701 0.99201 0.92702 0.93154 0.93032 0.92100 0.92439 0.92166 0.85714 0.74886 0.90424 0.90466 0.87294 0.88381 0.88677 0.88671 0.88360 0.88127 0.88143 0.88170 0.88123 0.85772 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.39 11.39 55.43 0.63 -24.76 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.03 8.56 -34.44 -0.29 -14.33 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.04 1.00 2.24 -91.87 -0.21 0.79 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.32 5.11 -26.69 -0.14 -2.45 16 12 C -0.13 -2.35 6.08 -26.61 -0.16 -2.51 16 13 C 0.07 1.28 5.99 -3.71 -0.02 1.26 16 14 N -0.57 -11.93 2.98 -173.53 -0.52 -12.45 16 15 C 0.49 10.05 7.73 -11.59 -0.09 9.96 16 16 O -0.52 -11.98 15.93 5.49 0.09 -11.89 16 17 C 0.51 8.49 7.74 -11.58 -0.09 8.40 16 18 O -0.52 -8.89 13.18 5.50 0.07 -8.81 16 19 N -0.71 -9.37 4.98 -60.73 -0.30 -9.68 16 20 C 0.15 1.63 4.84 -4.04 -0.02 1.61 16 21 C -0.11 -0.97 2.51 -154.51 -0.39 -1.36 16 22 C -0.11 -0.82 5.85 -90.62 -0.53 -1.35 16 23 C -0.18 -1.26 9.92 -26.70 -0.26 -1.52 16 24 C -0.18 -1.26 9.92 -26.69 -0.26 -1.52 16 25 C -0.17 -1.47 9.47 -26.73 -0.25 -1.72 16 26 C -0.17 -1.46 9.47 -26.73 -0.25 -1.72 16 27 C 0.11 2.62 5.39 -3.93 -0.02 2.60 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.13 2.17 4.31 -54.79 -0.24 1.93 16 35 H 0.41 5.34 5.07 -40.82 -0.21 5.13 16 36 H 0.08 0.84 6.90 -51.93 -0.36 0.48 16 37 H 0.08 0.83 6.91 -51.93 -0.36 0.47 16 38 H 0.11 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.10 0.74 6.75 -51.93 -0.35 0.39 16 40 H 0.09 0.57 8.14 -51.92 -0.42 0.14 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.75 6.75 -51.93 -0.35 0.40 16 43 H 0.10 0.97 7.00 -51.93 -0.36 0.61 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.10 0.96 7.02 -51.93 -0.36 0.60 16 47 H 0.12 3.46 5.11 -51.93 -0.27 3.19 16 48 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -30.11 375.03 -9.96 -40.06 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.47 Total: 8.02 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -3.09 Total: -2.28 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.19 Total: -46.88 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.16 Total: -20.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.11 -9.96 -40.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261711607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.429 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds