Wall clock time and date at job start Tue Mar 31 2020 13:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47053 * 2 1 4 4 C 1.40367 * 126.44070 * 265.29980 * 3 2 1 5 5 C 1.36544 * 106.70384 * 180.15177 * 4 3 2 6 6 C 1.46662 * 125.98885 * 179.85115 * 5 4 3 7 7 O 1.21698 * 119.99409 * 359.72249 * 6 5 4 8 8 N 1.34773 * 120.00213 * 179.72099 * 6 5 4 9 9 C 1.47418 * 125.64758 * 179.97438 * 8 6 5 10 10 C 1.54915 * 104.83107 * 204.17202 * 9 8 6 11 11 H 1.09002 * 111.00539 * 81.06145 * 10 9 8 12 12 C 1.53001 * 111.03575 * 204.90180 * 10 9 8 13 13 C 1.55154 * 101.58176 * 322.98725 * 10 9 8 14 14 H 1.08997 * 110.72125 * 276.96414 * 13 10 9 15 15 N 1.46497 * 110.72310 * 153.86360 * 13 10 9 16 16 C 1.36936 * 120.00157 * 155.00099 * 15 13 10 17 17 H 1.07999 * 120.00237 * 0.02562 * 16 15 13 18 18 C 1.38814 * 120.00050 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99959 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47183 * 60.00193 * 20 18 16 22 22 H 1.48508 * 109.47421 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47285 * 300.00260 * 20 18 16 24 24 C 1.47029 * 125.64745 * 0.02562 * 8 6 5 25 25 O 1.34910 * 108.02470 * 359.59465 * 5 4 3 26 26 C 1.33932 * 109.38941 * 0.25924 * 25 5 4 27 27 C 1.50691 * 125.61999 * 180.02562 * 26 25 5 28 28 C 1.52999 * 109.47114 * 269.97505 * 27 26 25 29 29 H 1.08990 * 109.47483 * 299.99874 * 1 2 3 30 30 H 1.09006 * 109.47228 * 60.00116 * 1 2 3 31 31 H 1.09000 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47179 * 240.00236 * 2 1 3 33 33 H 1.08998 * 109.47501 * 119.99979 * 2 1 3 34 34 H 1.07991 * 126.64847 * 0.05050 * 4 3 2 35 35 H 1.08995 * 110.37279 * 85.33616 * 9 8 6 36 36 H 1.08997 * 110.36990 * 323.00814 * 9 8 6 37 37 H 1.09000 * 109.47012 * 175.39412 * 12 10 9 38 38 H 1.08999 * 109.46864 * 295.38705 * 12 10 9 39 39 H 1.08992 * 109.47148 * 55.39463 * 12 10 9 40 40 H 0.96996 * 119.99952 * 335.00231 * 15 13 10 41 41 H 0.97004 * 120.00137 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.88066 * 59.47708 * 24 8 6 43 43 H 1.09003 * 109.87770 * 298.31367 * 24 8 6 44 44 H 1.09004 * 109.47659 * 29.97430 * 27 26 25 45 45 H 1.09008 * 109.47380 * 149.97427 * 27 26 25 46 46 H 1.08999 * 109.47477 * 180.02562 * 28 27 26 47 47 H 1.09001 * 109.47028 * 299.99976 * 28 27 26 48 48 H 1.08996 * 109.47423 * 59.99853 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3974 2.1761 -1.1254 5 6 2.7935 3.3993 -0.6656 6 6 3.2653 4.5179 -1.4884 7 8 3.3344 4.3972 -2.6974 8 7 3.6225 5.6795 -0.9056 9 6 4.1124 6.8787 -1.6092 10 6 4.9399 7.6493 -0.5503 11 1 5.9417 7.2301 -0.4565 12 6 5.0018 9.1418 -0.8815 13 6 4.1097 7.3992 0.7363 14 1 3.2824 8.1055 0.8048 15 7 4.9600 7.4826 1.9263 16 6 4.4110 7.8040 3.1389 17 1 3.3511 7.9955 3.2182 18 6 5.2168 7.8835 4.2664 19 7 6.5086 7.6506 4.1699 20 14 4.4681 8.3226 5.9205 21 1 3.4422 7.3121 6.2833 22 1 5.5323 8.3422 6.9561 23 1 3.8346 9.6631 5.8369 24 6 3.5890 5.9601 0.5373 25 8 2.6692 3.4005 0.6778 26 6 2.2105 2.2092 1.0830 27 6 1.9375 1.8134 2.5111 28 6 3.1997 1.2001 3.1206 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.3718 1.8520 -2.1552 35 1 3.2749 7.4863 -1.9518 36 1 4.7443 6.5934 -2.4503 37 1 5.5184 9.6705 -0.0804 38 1 5.5416 9.2841 -1.8177 39 1 3.9899 9.5339 -0.9821 40 1 5.9119 7.3102 1.8553 41 1 7.0718 7.7065 4.9577 42 1 4.2316 5.2567 1.0667 43 1 2.5664 5.8815 0.9065 44 1 1.6489 2.6949 3.0837 45 1 1.1292 1.0824 2.5374 46 1 3.0022 0.9133 4.1534 47 1 3.4882 0.3186 2.5480 48 1 4.0079 1.9309 3.0943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939550708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:32 Heat of formation + Delta-G solvation = -26.438559 kcal Electronic energy + Delta-G solvation = -27764.764738 eV Core-core repulsion = 24013.961167 eV Total energy + Delta-G solvation = -3750.803572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.70475 -39.65384 -37.56400 -35.60230 -34.10306 -33.59167 -32.51311 -31.27190 -30.74178 -28.82882 -27.54463 -26.35977 -24.55340 -24.03630 -23.38134 -21.88188 -21.26386 -20.38090 -19.97479 -18.95112 -17.19862 -17.12177 -16.47892 -16.01890 -15.73257 -15.38247 -14.86289 -14.58066 -14.18804 -14.00166 -13.79677 -13.57860 -13.27538 -13.14528 -13.09578 -12.88921 -12.63257 -12.59891 -12.49310 -12.37108 -12.07396 -11.67505 -11.56840 -11.53860 -11.30856 -11.15879 -11.02260 -10.89201 -10.73908 -10.63297 -10.30408 -10.14171 -9.97947 -9.74618 -9.69209 -9.01729 -8.54337 -8.22258 -7.11352 -5.86455 -3.17247 1.16589 2.29533 2.69445 3.24638 3.33498 3.37952 3.43195 3.43724 4.44478 4.52259 4.64621 4.68364 4.86357 4.95095 5.10248 5.12308 5.16962 5.20384 5.21992 5.23294 5.40613 5.53634 5.55423 5.61501 5.63829 5.68702 5.72827 5.76421 5.80826 5.87150 5.90826 5.94389 5.98677 6.01696 6.05828 6.14282 6.19888 6.25260 6.39991 6.45747 6.49198 6.52486 6.60330 6.86375 7.04433 7.60514 7.67869 8.20284 8.30806 9.42693 9.96164 10.31484 11.35360 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.004342 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.796706 B = 6447.567902 C = 8730.297890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C -0.192 4.192 4 C -0.120 4.120 5 C -0.068 4.068 6 C 0.611 3.389 7 O -0.538 6.538 8 N -0.603 5.603 9 C 0.114 3.886 10 C -0.115 4.115 11 H 0.084 0.916 12 C -0.132 4.132 13 C 0.178 3.822 14 H 0.070 0.930 15 N -0.709 5.709 16 C -0.248 4.248 17 H 0.072 0.928 18 C -0.007 4.007 19 N -0.929 5.929 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.075 3.925 25 O -0.145 6.145 26 C 0.025 3.975 27 C -0.048 4.048 28 C -0.151 4.151 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.182 -11.694 -7.583 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.193 4.193 4 C -0.141 4.141 5 C -0.120 4.120 6 C 0.400 3.600 7 O -0.418 6.418 8 N -0.334 5.334 9 C -0.008 4.008 10 C -0.135 4.135 11 H 0.102 0.898 12 C -0.190 4.190 13 C 0.065 3.935 14 H 0.088 0.912 15 N -0.349 5.349 16 C -0.379 4.379 17 H 0.089 0.911 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.050 4.050 25 O -0.040 6.040 26 C -0.028 4.028 27 C -0.086 4.086 28 C -0.208 4.208 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.173 0.827 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.221 0.779 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.158 -11.470 -7.863 16.651 hybrid contribution -0.087 -0.001 0.886 0.890 sum -9.245 -11.472 -6.977 16.302 Atomic orbital electron populations 1.21762 0.95035 1.01458 1.02260 1.19906 0.95619 0.90625 1.02675 1.20093 1.08944 0.98452 0.91816 1.21699 1.00376 0.91882 1.00147 1.21906 1.11527 0.97876 0.80731 1.16233 0.77893 0.80073 0.85791 1.90834 1.56589 1.81895 1.12508 1.48424 1.62955 1.12029 1.09998 1.22329 0.97726 0.85123 0.95637 1.22679 0.99639 0.95987 0.95244 0.89767 1.21595 1.01712 0.94399 1.01284 1.21262 0.93575 0.91819 0.86828 0.91243 1.42340 1.07112 1.82480 1.02949 1.19200 0.93128 1.40159 0.85432 0.91054 1.24745 0.95494 1.02082 0.98010 1.69651 1.03486 1.55299 1.29214 0.86281 0.77850 0.78341 0.83768 1.21175 1.21647 1.21146 1.23435 1.01691 1.01837 0.78071 1.84216 1.64430 1.33451 1.21950 1.22648 0.99880 0.83417 0.96892 1.20197 0.99479 1.01855 0.87020 1.21775 0.97147 1.01241 1.00628 0.92654 0.92539 0.92463 0.90961 0.91038 0.82667 0.91268 0.90644 0.91282 0.93149 0.92804 0.77863 0.93297 0.90513 0.92031 0.89449 0.88832 0.91418 0.92336 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.15 0.37 -0.83 16 2 C -0.05 -0.47 5.97 -27.88 -0.17 -0.63 16 3 C -0.19 -2.40 5.39 -104.92 -0.57 -2.97 16 4 C -0.12 -1.74 10.57 -39.39 -0.42 -2.15 16 5 C -0.07 -1.14 6.95 -36.79 -0.26 -1.39 16 6 C 0.61 11.06 7.82 -12.86 -0.10 10.96 16 7 O -0.54 -10.61 17.12 5.19 0.09 -10.52 16 8 N -0.60 -10.44 3.33 -172.06 -0.57 -11.01 16 9 C 0.11 1.75 6.38 -2.53 -0.02 1.73 16 10 C -0.12 -1.84 3.27 -88.47 -0.29 -2.13 16 11 H 0.08 1.43 8.01 -51.93 -0.42 1.01 16 12 C -0.13 -1.86 9.29 37.16 0.35 -1.51 16 13 C 0.18 3.36 3.09 -66.10 -0.20 3.15 16 14 H 0.07 1.31 7.99 -51.93 -0.41 0.90 16 15 N -0.71 -16.68 5.15 -51.65 -0.27 -16.95 16 16 C -0.25 -6.50 9.96 -15.06 -0.15 -6.65 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 19 N -0.93 -26.90 13.06 55.49 0.72 -26.17 16 20 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 C 0.08 1.38 5.30 -3.06 -0.02 1.37 16 25 O -0.15 -2.39 8.28 5.00 0.04 -2.35 16 26 C 0.02 0.33 6.57 -35.42 -0.23 0.10 16 27 C -0.05 -0.51 6.16 -27.89 -0.17 -0.68 16 28 C -0.15 -1.53 9.89 37.16 0.37 -1.16 16 29 H 0.05 0.44 7.74 -51.93 -0.40 0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.57 8.01 -51.93 -0.42 0.16 16 34 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.07 0.97 8.03 -51.93 -0.42 0.56 16 36 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 40 H 0.39 9.78 7.76 -40.82 -0.32 9.46 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.08 1.57 7.56 -51.93 -0.39 1.18 16 43 H 0.06 1.13 7.79 -51.93 -0.40 0.72 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 0.75 7.47 -51.92 -0.39 0.37 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -30.34 393.78 -8.85 -39.19 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.18 Total: 8.48 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.60 Total: -3.07 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.11 Total: -54.13 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.13 Total: -12.86 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.34 -8.85 -39.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939550708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.754 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds