Wall clock time and date at job start Tue Mar 31 2020 13:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47053 * 2 1 4 4 C 1.40367 * 126.44070 * 265.29980 * 3 2 1 5 5 C 1.36544 * 106.70384 * 180.15177 * 4 3 2 6 6 C 1.46662 * 125.98885 * 179.85115 * 5 4 3 7 7 O 1.21698 * 119.99409 * 359.72249 * 6 5 4 8 8 N 1.34773 * 120.00213 * 179.72099 * 6 5 4 9 9 C 1.47418 * 125.64758 * 179.97438 * 8 6 5 10 10 C 1.54915 * 104.83107 * 204.17202 * 9 8 6 11 11 H 1.09002 * 111.00539 * 81.06145 * 10 9 8 12 12 C 1.53001 * 111.03575 * 204.90180 * 10 9 8 13 13 C 1.55154 * 101.58176 * 322.98725 * 10 9 8 14 14 H 1.08997 * 110.72125 * 276.96414 * 13 10 9 15 15 N 1.46497 * 110.72310 * 153.86360 * 13 10 9 16 16 C 1.36936 * 120.00157 * 155.00099 * 15 13 10 17 17 H 1.07999 * 120.00237 * 0.02562 * 16 15 13 18 18 C 1.38814 * 120.00050 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99959 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47183 * 60.00193 * 20 18 16 22 22 H 1.48508 * 109.47421 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47285 * 300.00260 * 20 18 16 24 24 C 1.47029 * 125.64745 * 0.02562 * 8 6 5 25 25 O 1.34910 * 108.02470 * 359.59465 * 5 4 3 26 26 C 1.33932 * 109.38941 * 0.25924 * 25 5 4 27 27 C 1.50691 * 125.61999 * 180.02562 * 26 25 5 28 28 C 1.52999 * 109.47114 * 269.97505 * 27 26 25 29 29 H 1.08990 * 109.47483 * 299.99874 * 1 2 3 30 30 H 1.09006 * 109.47228 * 60.00116 * 1 2 3 31 31 H 1.09000 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47179 * 240.00236 * 2 1 3 33 33 H 1.08998 * 109.47501 * 119.99979 * 2 1 3 34 34 H 1.07991 * 126.64847 * 0.05050 * 4 3 2 35 35 H 1.08995 * 110.37279 * 85.33616 * 9 8 6 36 36 H 1.08997 * 110.36990 * 323.00814 * 9 8 6 37 37 H 1.09000 * 109.47012 * 175.39412 * 12 10 9 38 38 H 1.08999 * 109.46864 * 295.38705 * 12 10 9 39 39 H 1.08992 * 109.47148 * 55.39463 * 12 10 9 40 40 H 0.96996 * 119.99952 * 335.00231 * 15 13 10 41 41 H 0.97004 * 120.00137 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.88066 * 59.47708 * 24 8 6 43 43 H 1.09003 * 109.87770 * 298.31367 * 24 8 6 44 44 H 1.09004 * 109.47659 * 29.97430 * 27 26 25 45 45 H 1.09008 * 109.47380 * 149.97427 * 27 26 25 46 46 H 1.08999 * 109.47477 * 180.02562 * 28 27 26 47 47 H 1.09001 * 109.47028 * 299.99976 * 28 27 26 48 48 H 1.08996 * 109.47423 * 59.99853 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3974 2.1761 -1.1254 5 6 2.7935 3.3993 -0.6656 6 6 3.2653 4.5179 -1.4884 7 8 3.3344 4.3972 -2.6974 8 7 3.6225 5.6795 -0.9056 9 6 4.1124 6.8787 -1.6092 10 6 4.9399 7.6493 -0.5503 11 1 5.9417 7.2301 -0.4565 12 6 5.0018 9.1418 -0.8815 13 6 4.1097 7.3992 0.7363 14 1 3.2824 8.1055 0.8048 15 7 4.9600 7.4826 1.9263 16 6 4.4110 7.8040 3.1389 17 1 3.3511 7.9955 3.2182 18 6 5.2168 7.8835 4.2664 19 7 6.5086 7.6506 4.1699 20 14 4.4681 8.3226 5.9205 21 1 3.4422 7.3121 6.2833 22 1 5.5323 8.3422 6.9561 23 1 3.8346 9.6631 5.8369 24 6 3.5890 5.9601 0.5373 25 8 2.6692 3.4005 0.6778 26 6 2.2105 2.2092 1.0830 27 6 1.9375 1.8134 2.5111 28 6 3.1997 1.2001 3.1206 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.3718 1.8520 -2.1552 35 1 3.2749 7.4863 -1.9518 36 1 4.7443 6.5934 -2.4503 37 1 5.5184 9.6705 -0.0804 38 1 5.5416 9.2841 -1.8177 39 1 3.9899 9.5339 -0.9821 40 1 5.9119 7.3102 1.8553 41 1 7.0718 7.7065 4.9577 42 1 4.2316 5.2567 1.0667 43 1 2.5664 5.8815 0.9065 44 1 1.6489 2.6949 3.0837 45 1 1.1292 1.0824 2.5374 46 1 3.0022 0.9133 4.1534 47 1 3.4882 0.3186 2.5480 48 1 4.0079 1.9309 3.0943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939550708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:31 Heat of formation + Delta-G solvation = -43.163614 kcal Electronic energy + Delta-G solvation = -27765.489991 eV Core-core repulsion = 24013.961167 eV Total energy + Delta-G solvation = -3751.528824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.83873 -41.06692 -39.03642 -36.53595 -35.89674 -34.51046 -33.99782 -32.54575 -32.20736 -29.90005 -29.21119 -27.53708 -25.96773 -25.34490 -24.43069 -23.17401 -22.43658 -21.60221 -21.44239 -20.13571 -19.12706 -18.41068 -17.71663 -17.38631 -17.08306 -16.61625 -16.25585 -15.75749 -15.54071 -15.37440 -14.98846 -14.73471 -14.62027 -14.54281 -14.24420 -14.09433 -13.91982 -13.73915 -13.47949 -13.34749 -13.30747 -13.02600 -12.88997 -12.82276 -12.50585 -12.29848 -12.25618 -12.20166 -12.06823 -12.05317 -11.72104 -11.68272 -11.55257 -11.38756 -10.94339 -10.78682 -9.89390 -9.39458 -9.08381 -7.94513 -5.24989 -0.05759 1.23545 1.49320 1.50661 1.52932 1.57560 1.96847 2.00247 2.56489 3.24332 3.36544 3.59172 3.73568 3.75072 3.77695 3.85057 4.08887 4.18203 4.22586 4.27981 4.28413 4.38087 4.43239 4.47284 4.54820 4.59181 4.61808 4.66807 4.82966 4.83705 4.84331 4.89660 4.94790 4.96595 5.04791 5.10520 5.11796 5.16897 5.27671 5.29029 5.30505 5.36741 5.46231 5.53225 5.54489 5.92057 6.23047 6.27317 6.81911 7.33071 8.02954 8.28237 9.28096 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.004342 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.796706 B = 6447.567902 C = 8730.297890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.187 4.187 4 C -0.113 4.113 5 C -0.107 4.107 6 C 0.609 3.391 7 O -0.560 6.560 8 N -0.605 5.605 9 C 0.116 3.884 10 C -0.105 4.105 11 H 0.071 0.929 12 C -0.126 4.126 13 C 0.173 3.827 14 H 0.075 0.925 15 N -0.719 5.719 16 C -0.245 4.245 17 H 0.079 0.921 18 C -0.066 4.066 19 N -0.967 5.967 20 Si 0.969 3.031 21 H -0.278 1.278 22 H -0.298 1.298 23 H -0.277 1.277 24 C 0.095 3.905 25 O -0.169 6.169 26 C 0.018 3.982 27 C -0.048 4.048 28 C -0.148 4.148 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.165 0.835 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.126 0.874 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.054 -12.826 -7.736 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.188 4.188 4 C -0.133 4.133 5 C -0.158 4.158 6 C 0.399 3.601 7 O -0.442 6.442 8 N -0.336 5.336 9 C -0.006 4.006 10 C -0.125 4.125 11 H 0.089 0.911 12 C -0.183 4.183 13 C 0.063 3.937 14 H 0.093 0.907 15 N -0.357 5.357 16 C -0.376 4.376 17 H 0.096 0.904 18 C -0.259 4.259 19 N -0.616 5.616 20 Si 0.798 3.202 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.203 1.203 24 C -0.031 4.031 25 O -0.065 6.065 26 C -0.034 4.034 27 C -0.085 4.085 28 C -0.205 4.205 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.183 0.817 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.144 0.856 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.073 -12.596 -8.051 18.603 hybrid contribution 0.448 0.261 0.881 1.022 sum -10.625 -12.335 -7.170 17.789 Atomic orbital electron populations 1.21752 0.94021 1.02696 1.01829 1.20048 0.96374 0.88295 1.04008 1.20484 1.07938 0.99864 0.90509 1.22006 0.98796 0.91291 1.01235 1.21817 1.14359 0.98492 0.81138 1.16438 0.77500 0.80392 0.85774 1.90801 1.57793 1.82361 1.13284 1.48444 1.63022 1.12651 1.09481 1.22447 0.98370 0.84496 0.95253 1.22581 0.98505 0.97650 0.93725 0.91067 1.21551 1.02760 0.92291 1.01716 1.21435 0.93680 0.92005 0.86619 0.90701 1.42440 1.06977 1.82589 1.03742 1.19576 0.93415 1.38240 0.86389 0.90357 1.25495 0.95905 1.03172 1.01328 1.69808 1.04769 1.57462 1.29594 0.85291 0.76902 0.78388 0.79656 1.20361 1.22422 1.20313 1.22998 1.00807 1.00559 0.78713 1.84183 1.65268 1.35154 1.21909 1.23401 0.98826 0.82637 0.98584 1.20401 1.00565 1.02436 0.85061 1.21766 0.95937 1.00695 1.02132 0.92571 0.93545 0.90397 0.90096 0.89291 0.81697 0.89246 0.89973 0.93293 0.90629 0.91367 0.79248 0.94002 0.93120 0.92188 0.90086 0.85585 0.89385 0.91212 0.94700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.89 71.98 0.71 -1.21 16 2 C -0.05 -0.77 5.97 29.85 0.18 -0.59 16 3 C -0.19 -4.40 5.39 -20.06 -0.11 -4.51 16 4 C -0.11 -3.19 10.57 22.39 0.24 -2.96 16 5 C -0.11 -3.61 6.95 24.08 0.17 -3.44 16 6 C 0.61 22.31 7.82 86.44 0.68 22.99 16 7 O -0.56 -22.16 17.12 -4.34 -0.07 -22.24 16 8 N -0.61 -21.10 3.33 -816.50 -2.72 -23.81 16 9 C 0.12 3.44 6.38 86.86 0.55 4.00 16 10 C -0.10 -3.30 3.27 -9.40 -0.03 -3.33 16 11 H 0.07 2.45 8.01 -2.39 -0.02 2.43 16 12 C -0.13 -3.35 9.29 71.98 0.67 -2.68 16 13 C 0.17 6.58 3.09 46.18 0.14 6.73 16 14 H 0.08 2.78 7.99 -2.39 -0.02 2.76 16 15 N -0.72 -34.54 5.15 -317.34 -1.63 -36.18 16 16 C -0.24 -12.91 9.96 84.03 0.84 -12.08 16 17 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 18 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 19 N -0.97 -57.33 13.06 21.65 0.28 -57.05 16 20 Si 0.97 44.43 29.55 68.60 2.03 46.46 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.10 3.57 5.30 86.73 0.46 4.03 16 25 O -0.17 -5.67 8.28 -5.02 -0.04 -5.71 16 26 C 0.02 0.47 6.57 24.97 0.16 0.64 16 27 C -0.05 -0.92 6.16 29.85 0.18 -0.74 16 28 C -0.15 -2.81 9.89 71.98 0.71 -2.09 16 29 H 0.06 0.73 7.74 -2.39 -0.02 0.71 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.09 8.01 -2.39 -0.02 1.08 16 34 H 0.17 4.23 8.06 -2.92 -0.02 4.20 16 35 H 0.09 2.33 8.03 -2.39 -0.02 2.31 16 36 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 40 H 0.38 19.64 7.76 -92.71 -0.72 18.92 16 41 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.05 2.17 7.56 -2.39 -0.02 2.15 16 43 H 0.06 2.24 7.79 -2.39 -0.02 2.22 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.13 1.62 7.47 -2.38 -0.02 1.60 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -66.71 393.78 4.09 -62.63 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.22 Total: 34.36 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 6.02 Total: 1.55 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.07 Total: -117.04 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.12 Total: -27.95 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -66.71 4.09 -62.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939550708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.462 kcal (2) G-P(sol) polarization free energy of solvation -66.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds