Wall clock time and date at job start Tue Mar 31 2020 13:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46903 * 2 1 4 4 C 1.40372 * 126.43958 * 265.23393 * 3 2 1 5 5 C 1.36542 * 106.70457 * 180.15880 * 4 3 2 6 6 C 1.46664 * 125.98746 * 179.91394 * 5 4 3 7 7 O 1.21695 * 119.99920 * 359.71062 * 6 5 4 8 8 N 1.34778 * 119.99895 * 179.71183 * 6 5 4 9 9 C 1.47418 * 125.64954 * 359.97428 * 8 6 5 10 10 C 1.54910 * 104.83373 * 155.90456 * 9 8 6 11 11 C 1.55161 * 101.61271 * 36.99269 * 10 9 8 12 12 H 1.08990 * 110.72332 * 82.88381 * 11 10 9 13 13 N 1.46504 * 110.71998 * 206.15745 * 11 10 9 14 14 C 1.46499 * 120.00437 * 59.99233 * 13 11 10 15 15 C 1.36940 * 120.00012 * 240.00291 * 13 11 10 16 16 H 1.07999 * 119.99828 * 23.29199 * 15 13 11 17 17 C 1.38809 * 119.99925 * 203.30318 * 15 13 11 18 18 N 1.31620 * 120.00382 * 14.10412 * 17 15 13 19 19 Si 1.86804 * 119.99880 * 194.10829 * 17 15 13 20 20 H 1.48505 * 109.46987 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47221 * 119.99669 * 19 17 15 22 22 H 1.48502 * 109.47012 * 239.99927 * 19 17 15 23 23 C 1.47022 * 125.64459 * 180.02562 * 8 6 5 24 24 O 1.34915 * 108.02729 * 359.64517 * 5 4 3 25 25 C 1.33931 * 109.38233 * 0.23167 * 24 5 4 26 26 C 1.50699 * 125.61396 * 180.02562 * 25 24 5 27 27 C 1.53001 * 109.46821 * 269.96667 * 26 25 24 28 28 H 1.08997 * 109.47319 * 59.99828 * 1 2 3 29 29 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46947 * 299.99980 * 1 2 3 31 31 H 1.09000 * 109.46947 * 240.00020 * 2 1 3 32 32 H 1.09001 * 109.47048 * 119.99753 * 2 1 3 33 33 H 1.07995 * 126.64510 * 0.02889 * 4 3 2 34 34 H 1.09002 * 110.37149 * 37.06563 * 9 8 6 35 35 H 1.08995 * 110.46432 * 274.79094 * 9 8 6 36 36 H 1.09003 * 111.00561 * 155.08001 * 10 9 8 37 37 H 1.08996 * 111.00970 * 278.90043 * 10 9 8 38 38 H 1.09002 * 109.47052 * 95.17815 * 14 13 11 39 39 H 1.09001 * 109.47511 * 215.17990 * 14 13 11 40 40 H 1.09004 * 109.47335 * 335.18225 * 14 13 11 41 41 H 0.96995 * 119.99856 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.88364 * 300.44039 * 23 8 6 43 43 H 1.09001 * 109.88242 * 61.61072 * 23 8 6 44 44 H 1.09003 * 109.47551 * 29.96770 * 26 25 24 45 45 H 1.09006 * 109.47131 * 149.97502 * 26 25 24 46 46 H 1.09009 * 109.47081 * 60.00553 * 27 26 25 47 47 H 1.09000 * 109.47288 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.47740 * 300.00807 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3986 2.1756 -1.1254 5 6 2.7943 3.3989 -0.6656 6 6 3.2658 4.5176 -1.4885 7 8 3.3351 4.3968 -2.6975 8 7 3.6224 5.6794 -0.9058 9 6 3.5875 5.9613 0.5408 10 6 4.6206 7.0967 0.7487 11 6 4.4169 7.9433 -0.5356 12 1 3.5748 8.6252 -0.4185 13 7 5.6388 8.6790 -0.8707 14 6 6.8806 7.9512 -1.1435 15 6 5.6201 10.0470 -0.9286 16 1 4.8673 10.6002 -0.3869 17 6 6.5688 10.7226 -1.6839 18 7 7.3044 10.0668 -2.5563 19 14 6.8015 12.5628 -1.4619 20 1 5.8586 13.0598 -0.4279 21 1 8.1965 12.8372 -1.0332 22 1 6.5340 13.2543 -2.7486 23 6 4.1097 6.8759 -1.6077 24 8 2.6698 3.4003 0.6778 25 6 2.2106 2.2092 1.0829 26 6 1.9372 1.8135 2.5111 27 6 3.1991 1.1998 3.1207 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3744 1.8509 -2.1551 34 1 3.8776 5.0762 1.1070 35 1 2.5935 6.2934 0.8404 36 1 4.3879 7.6782 1.6408 37 1 5.6341 6.6987 0.7976 38 1 6.9876 7.8055 -2.2185 39 1 7.7280 8.5250 -0.7684 40 1 6.8500 6.9814 -0.6468 41 1 7.9675 10.5389 -3.0837 42 1 5.0170 6.6365 -2.1622 43 1 3.3426 7.2442 -2.2889 44 1 1.6489 2.6952 3.0836 45 1 1.1287 1.0828 2.5373 46 1 4.0077 1.9305 3.0946 47 1 3.0016 0.9140 4.1539 48 1 3.4876 0.3182 2.5483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972740607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:56 Heat of formation + Delta-G solvation = -5.401454 kcal Electronic energy + Delta-G solvation = -27467.181854 eV Core-core repulsion = 23717.290520 eV Total energy + Delta-G solvation = -3749.891334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.85974 -39.56453 -37.43516 -35.76921 -34.78608 -33.79820 -31.70202 -31.39604 -29.86096 -29.04191 -27.65033 -26.05952 -24.94284 -24.21946 -22.99839 -22.38019 -21.55792 -20.60989 -19.28537 -19.04682 -17.22492 -17.05836 -16.58708 -16.02934 -15.77244 -15.41437 -14.92855 -14.71184 -14.35478 -14.05164 -13.88431 -13.47952 -13.39841 -13.25233 -13.01929 -12.78831 -12.72152 -12.57605 -12.48420 -12.19880 -11.91195 -11.82659 -11.69564 -11.53912 -11.43971 -11.05025 -10.93974 -10.80600 -10.58092 -10.49934 -10.27451 -10.07276 -9.87470 -9.83346 -9.80718 -8.61990 -8.59049 -8.26380 -6.82215 -5.77355 -3.25739 1.05429 2.17504 2.54494 3.21318 3.31689 3.35956 3.43242 3.45218 4.31453 4.45170 4.52243 4.55020 4.68501 4.85754 4.94689 5.02623 5.04597 5.09636 5.22025 5.27593 5.32358 5.41770 5.43804 5.49373 5.54433 5.57667 5.59904 5.70238 5.73084 5.82578 5.86765 5.89889 5.93776 5.97399 6.05045 6.32329 6.32611 6.37267 6.49328 6.60905 6.78916 6.84965 6.89673 7.31153 7.68747 7.70239 7.76988 8.22470 8.34045 9.16838 9.79352 10.28720 11.26771 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.027516 B = 0.002651 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.349313 B =10559.572079 C =11094.196194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.185 4.185 4 C -0.121 4.121 5 C -0.062 4.062 6 C 0.607 3.393 7 O -0.527 6.527 8 N -0.601 5.601 9 C 0.101 3.899 10 C -0.153 4.153 11 C 0.173 3.827 12 H 0.080 0.920 13 N -0.585 5.585 14 C 0.158 3.842 15 C -0.262 4.262 16 H 0.071 0.929 17 C 0.005 3.995 18 N -0.902 5.902 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.087 3.913 24 O -0.154 6.154 25 C 0.013 3.987 26 C -0.046 4.046 27 C -0.151 4.151 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.042 0.958 40 H 0.002 0.998 41 H 0.253 0.747 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.773 -19.818 11.563 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.186 4.186 4 C -0.142 4.142 5 C -0.114 4.114 6 C 0.395 3.605 7 O -0.406 6.406 8 N -0.334 5.334 9 C -0.022 4.022 10 C -0.193 4.193 11 C 0.063 3.937 12 H 0.098 0.902 13 N -0.305 5.305 14 C 0.014 3.986 15 C -0.391 4.391 16 H 0.089 0.911 17 C -0.194 4.194 18 N -0.546 5.546 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.217 1.217 23 C -0.037 4.037 24 O -0.050 6.050 25 C -0.040 4.040 26 C -0.083 4.083 27 C -0.208 4.208 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.175 0.825 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.496 -19.558 10.941 25.187 hybrid contribution 0.195 0.893 -0.208 0.937 sum -11.301 -18.666 10.733 24.317 Atomic orbital electron populations 1.21761 0.94934 1.01557 1.02274 1.19926 0.95702 0.90588 1.02751 1.20117 1.08249 0.98419 0.91854 1.21757 1.00208 0.91900 1.00330 1.22077 1.10972 0.98005 0.80371 1.16252 0.78281 0.80030 0.85956 1.90877 1.55751 1.81478 1.12455 1.48442 1.63103 1.12612 1.09197 1.22436 0.99938 0.99200 0.80601 1.23387 0.98700 0.96319 1.00874 1.21377 0.91147 0.91017 0.90199 0.90188 1.43934 1.03126 1.02788 1.80654 1.20801 0.87707 0.91467 0.98627 1.19248 1.14747 0.81156 1.23958 0.91122 1.25080 1.00127 0.98081 0.96149 1.70086 1.25475 1.34867 1.24165 0.86163 0.77668 0.85098 0.77447 1.20235 1.21566 1.21680 1.22976 0.99580 0.83951 0.97153 1.84151 1.64972 1.33573 1.22269 1.22584 1.00890 0.83694 0.96810 1.20164 0.99460 1.01695 0.86964 1.21785 0.96996 1.01336 1.00685 0.92433 0.92388 0.92724 0.90830 0.91064 0.82516 0.90599 0.91511 0.90282 0.90564 0.94821 0.93905 0.97941 0.93630 0.90486 0.91737 0.89751 0.88749 0.92000 0.91465 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.05 -0.40 5.97 -27.88 -0.17 -0.57 16 3 C -0.19 -1.99 5.39 -104.93 -0.57 -2.55 16 4 C -0.12 -1.62 10.57 -39.39 -0.42 -2.03 16 5 C -0.06 -0.95 6.93 -36.79 -0.25 -1.20 16 6 C 0.61 11.05 7.82 -12.86 -0.10 10.95 16 7 O -0.53 -11.16 17.19 5.19 0.09 -11.07 16 8 N -0.60 -10.60 3.33 -172.04 -0.57 -11.17 16 9 C 0.10 1.48 6.17 -2.53 -0.02 1.47 16 10 C -0.15 -2.49 6.61 -24.58 -0.16 -2.65 16 11 C 0.17 3.45 3.43 -66.07 -0.23 3.22 16 12 H 0.08 1.57 7.95 -51.93 -0.41 1.15 16 13 N -0.58 -14.29 2.93 -171.36 -0.50 -14.79 16 14 C 0.16 3.87 7.51 59.85 0.45 4.32 16 15 C -0.26 -7.01 9.59 -15.06 -0.14 -7.15 16 16 H 0.07 1.83 7.87 -52.49 -0.41 1.42 16 17 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 18 N -0.90 -26.14 10.79 55.49 0.60 -25.54 16 19 Si 0.91 21.54 29.58 -169.99 -5.03 16.51 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.09 1.74 6.50 -3.04 -0.02 1.72 16 24 O -0.15 -2.03 7.86 4.99 0.04 -2.00 16 25 C 0.01 0.13 6.57 -35.42 -0.23 -0.10 16 26 C -0.05 -0.32 6.16 -27.88 -0.17 -0.49 16 27 C -0.15 -0.94 9.89 37.16 0.37 -0.57 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.35 7.74 -51.93 -0.40 -0.05 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.45 8.01 -51.93 -0.42 0.03 16 33 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.08 1.03 6.22 -51.93 -0.32 0.71 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.32 6.45 -51.93 -0.34 0.99 16 38 H 0.03 0.90 7.24 -51.93 -0.38 0.53 16 39 H 0.04 1.11 7.39 -51.93 -0.38 0.73 16 40 H 0.00 0.05 6.47 -51.93 -0.34 -0.29 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.08 1.73 6.84 -51.93 -0.36 1.37 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.49 7.47 -51.93 -0.39 0.10 16 46 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -31.54 384.52 -8.89 -40.42 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.93 Total: -1.93 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.38 Total: 3.77 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.48 Total: -51.50 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.13 Total: -13.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.54 -8.89 -40.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972740607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.023 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds