Wall clock time and date at job start Tue Mar 31 2020 13:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46903 * 2 1 4 4 C 1.40372 * 126.43958 * 265.23393 * 3 2 1 5 5 C 1.36542 * 106.70457 * 180.15880 * 4 3 2 6 6 C 1.46664 * 125.98746 * 179.91394 * 5 4 3 7 7 O 1.21695 * 119.99920 * 359.71062 * 6 5 4 8 8 N 1.34778 * 119.99895 * 179.71183 * 6 5 4 9 9 C 1.47418 * 125.64954 * 359.97428 * 8 6 5 10 10 C 1.54910 * 104.83373 * 155.90456 * 9 8 6 11 11 C 1.55161 * 101.61271 * 36.99269 * 10 9 8 12 12 H 1.08990 * 110.72332 * 82.88381 * 11 10 9 13 13 N 1.46504 * 110.71998 * 206.15745 * 11 10 9 14 14 C 1.46499 * 120.00437 * 59.99233 * 13 11 10 15 15 C 1.36940 * 120.00012 * 240.00291 * 13 11 10 16 16 H 1.07999 * 119.99828 * 23.29199 * 15 13 11 17 17 C 1.38809 * 119.99925 * 203.30318 * 15 13 11 18 18 N 1.31620 * 120.00382 * 14.10412 * 17 15 13 19 19 Si 1.86804 * 119.99880 * 194.10829 * 17 15 13 20 20 H 1.48505 * 109.46987 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47221 * 119.99669 * 19 17 15 22 22 H 1.48502 * 109.47012 * 239.99927 * 19 17 15 23 23 C 1.47022 * 125.64459 * 180.02562 * 8 6 5 24 24 O 1.34915 * 108.02729 * 359.64517 * 5 4 3 25 25 C 1.33931 * 109.38233 * 0.23167 * 24 5 4 26 26 C 1.50699 * 125.61396 * 180.02562 * 25 24 5 27 27 C 1.53001 * 109.46821 * 269.96667 * 26 25 24 28 28 H 1.08997 * 109.47319 * 59.99828 * 1 2 3 29 29 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46947 * 299.99980 * 1 2 3 31 31 H 1.09000 * 109.46947 * 240.00020 * 2 1 3 32 32 H 1.09001 * 109.47048 * 119.99753 * 2 1 3 33 33 H 1.07995 * 126.64510 * 0.02889 * 4 3 2 34 34 H 1.09002 * 110.37149 * 37.06563 * 9 8 6 35 35 H 1.08995 * 110.46432 * 274.79094 * 9 8 6 36 36 H 1.09003 * 111.00561 * 155.08001 * 10 9 8 37 37 H 1.08996 * 111.00970 * 278.90043 * 10 9 8 38 38 H 1.09002 * 109.47052 * 95.17815 * 14 13 11 39 39 H 1.09001 * 109.47511 * 215.17990 * 14 13 11 40 40 H 1.09004 * 109.47335 * 335.18225 * 14 13 11 41 41 H 0.96995 * 119.99856 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.88364 * 300.44039 * 23 8 6 43 43 H 1.09001 * 109.88242 * 61.61072 * 23 8 6 44 44 H 1.09003 * 109.47551 * 29.96770 * 26 25 24 45 45 H 1.09006 * 109.47131 * 149.97502 * 26 25 24 46 46 H 1.09009 * 109.47081 * 60.00553 * 27 26 25 47 47 H 1.09000 * 109.47288 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.47740 * 300.00807 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3986 2.1756 -1.1254 5 6 2.7943 3.3989 -0.6656 6 6 3.2658 4.5176 -1.4885 7 8 3.3351 4.3968 -2.6975 8 7 3.6224 5.6794 -0.9058 9 6 3.5875 5.9613 0.5408 10 6 4.6206 7.0967 0.7487 11 6 4.4169 7.9433 -0.5356 12 1 3.5748 8.6252 -0.4185 13 7 5.6388 8.6790 -0.8707 14 6 6.8806 7.9512 -1.1435 15 6 5.6201 10.0470 -0.9286 16 1 4.8673 10.6002 -0.3869 17 6 6.5688 10.7226 -1.6839 18 7 7.3044 10.0668 -2.5563 19 14 6.8015 12.5628 -1.4619 20 1 5.8586 13.0598 -0.4279 21 1 8.1965 12.8372 -1.0332 22 1 6.5340 13.2543 -2.7486 23 6 4.1097 6.8759 -1.6077 24 8 2.6698 3.4003 0.6778 25 6 2.2106 2.2092 1.0829 26 6 1.9372 1.8135 2.5111 27 6 3.1991 1.1998 3.1207 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3744 1.8509 -2.1551 34 1 3.8776 5.0762 1.1070 35 1 2.5935 6.2934 0.8404 36 1 4.3879 7.6782 1.6408 37 1 5.6341 6.6987 0.7976 38 1 6.9876 7.8055 -2.2185 39 1 7.7280 8.5250 -0.7684 40 1 6.8500 6.9814 -0.6468 41 1 7.9675 10.5389 -3.0837 42 1 5.0170 6.6365 -2.1622 43 1 3.3426 7.2442 -2.2889 44 1 1.6489 2.6952 3.0836 45 1 1.1287 1.0828 2.5373 46 1 4.0077 1.9305 3.0946 47 1 3.0016 0.9140 4.1539 48 1 3.4876 0.3182 2.5483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972740607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:55 Heat of formation + Delta-G solvation = -22.915141 kcal Electronic energy + Delta-G solvation = -27467.941305 eV Core-core repulsion = 23717.290520 eV Total energy + Delta-G solvation = -3750.650785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.83325 -41.01397 -39.00519 -36.73157 -36.37119 -34.46825 -33.53642 -32.21340 -31.46702 -30.21279 -28.95506 -28.09247 -26.05177 -25.13064 -24.25480 -23.76386 -22.47967 -21.67018 -20.92793 -20.18016 -18.98406 -18.38960 -17.80623 -17.31864 -17.11100 -16.70463 -16.29843 -15.66289 -15.62391 -15.19639 -15.05534 -14.77517 -14.55239 -14.45218 -14.25340 -14.13005 -13.94892 -13.67540 -13.40553 -13.35200 -13.24745 -13.09712 -12.81039 -12.56397 -12.43811 -12.42824 -12.29117 -12.25570 -12.09726 -12.00309 -11.82447 -11.65381 -11.51103 -11.44783 -10.78893 -10.66314 -9.90766 -9.37131 -8.84195 -7.85058 -5.36345 -0.04864 1.25458 1.44323 1.47996 1.49160 1.59495 1.95520 2.01291 2.50407 3.25366 3.35227 3.50286 3.70807 3.74092 3.78655 3.95030 4.13702 4.22628 4.23512 4.28754 4.35774 4.37927 4.44988 4.51269 4.56642 4.59596 4.69371 4.73877 4.81186 4.85664 4.92281 4.95829 5.00157 5.04245 5.11943 5.14350 5.17112 5.23566 5.29093 5.36368 5.36608 5.38009 5.56457 5.62867 5.66285 5.89650 6.29165 6.32218 6.82326 7.10239 7.80169 8.26128 9.18108 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.027516 B = 0.002651 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.349313 B =10559.572079 C =11094.196194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C -0.191 4.191 4 C -0.117 4.117 5 C -0.096 4.096 6 C 0.604 3.396 7 O -0.572 6.572 8 N -0.604 5.604 9 C 0.109 3.891 10 C -0.137 4.137 11 C 0.168 3.832 12 H 0.087 0.913 13 N -0.600 5.600 14 C 0.178 3.822 15 C -0.265 4.265 16 H 0.081 0.919 17 C -0.054 4.054 18 N -0.939 5.939 19 Si 0.973 3.027 20 H -0.261 1.261 21 H -0.292 1.292 22 H -0.296 1.296 23 C 0.098 3.902 24 O -0.159 6.159 25 C 0.027 3.973 26 C -0.046 4.046 27 C -0.150 4.150 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.154 0.846 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.065 0.935 38 H -0.001 1.001 39 H 0.020 0.980 40 H 0.027 0.973 41 H 0.248 0.752 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.120 0.880 46 H 0.046 0.954 47 H 0.089 0.911 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.722 -21.352 15.010 29.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.192 4.192 4 C -0.138 4.138 5 C -0.148 4.148 6 C 0.394 3.606 7 O -0.454 6.454 8 N -0.335 5.335 9 C -0.013 4.013 10 C -0.177 4.177 11 C 0.059 3.941 12 H 0.105 0.895 13 N -0.321 5.321 14 C 0.033 3.967 15 C -0.395 4.395 16 H 0.098 0.902 17 C -0.249 4.249 18 N -0.585 5.585 19 Si 0.801 3.199 20 H -0.184 1.184 21 H -0.219 1.219 22 H -0.223 1.223 23 C -0.027 4.027 24 O -0.055 6.055 25 C -0.026 4.026 26 C -0.082 4.082 27 C -0.207 4.207 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.172 0.828 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.017 0.983 39 H 0.038 0.962 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.138 0.862 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.485 -21.108 14.444 28.915 hybrid contribution 0.706 1.212 -1.215 1.856 sum -12.779 -19.896 13.229 27.095 Atomic orbital electron populations 1.21756 0.94117 1.02619 1.01866 1.20037 0.96301 0.88581 1.03903 1.20460 1.08173 0.99856 0.90706 1.22004 0.98840 0.91724 1.01221 1.21431 1.14420 0.97574 0.81343 1.16633 0.77511 0.80576 0.85867 1.90834 1.57711 1.82400 1.14475 1.48465 1.62902 1.11840 1.10307 1.22565 1.00664 0.99266 0.78768 1.23245 0.98766 0.96165 0.99508 1.21564 0.89702 0.91159 0.91677 0.89464 1.44113 1.04454 1.02644 1.80862 1.20452 0.87437 0.92201 0.96562 1.19651 1.14362 0.82429 1.23052 0.90152 1.25901 1.00431 1.02324 0.96282 1.70266 1.26391 1.36377 1.25507 0.85121 0.77482 0.80047 0.77260 1.18449 1.21880 1.22300 1.22595 0.97844 0.85256 0.97013 1.84104 1.65428 1.34963 1.21014 1.23471 0.98118 0.82394 0.98581 1.20445 1.00567 1.02871 0.84350 1.21790 0.96053 1.00822 1.02007 0.93959 0.90626 0.92042 0.90776 0.88882 0.82785 0.88946 0.89162 0.87719 0.91586 0.98251 0.96151 0.95413 0.94265 0.93804 0.92924 0.88635 0.86240 0.93467 0.89232 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.05 -0.63 5.97 29.85 0.18 -0.45 16 3 C -0.19 -3.68 5.39 -20.06 -0.11 -3.79 16 4 C -0.12 -3.07 10.57 22.39 0.24 -2.84 16 5 C -0.10 -2.90 6.93 24.07 0.17 -2.73 16 6 C 0.60 22.58 7.82 86.44 0.68 23.26 16 7 O -0.57 -25.57 17.19 -4.33 -0.07 -25.64 16 8 N -0.60 -21.42 3.33 -816.43 -2.72 -24.14 16 9 C 0.11 2.97 6.17 86.86 0.54 3.51 16 10 C -0.14 -4.20 6.61 31.99 0.21 -3.99 16 11 C 0.17 6.64 3.43 46.20 0.16 6.80 16 12 H 0.09 3.32 7.95 -2.39 -0.02 3.31 16 13 N -0.60 -29.71 2.93 -696.05 -2.04 -31.75 16 14 C 0.18 9.03 7.51 127.77 0.96 9.99 16 15 C -0.27 -14.24 9.59 84.03 0.81 -13.44 16 16 H 0.08 4.09 7.87 -2.91 -0.02 4.07 16 17 C -0.05 -3.02 5.08 84.86 0.43 -2.59 16 18 N -0.94 -56.44 10.79 21.65 0.23 -56.21 16 19 Si 0.97 44.79 29.58 68.60 2.03 46.82 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 23 C 0.10 4.03 6.50 86.75 0.56 4.60 16 24 O -0.16 -3.90 7.86 -5.05 -0.04 -3.94 16 25 C 0.03 0.49 6.57 24.97 0.16 0.66 16 26 C -0.05 -0.44 6.16 29.85 0.18 -0.26 16 27 C -0.15 -1.31 9.89 71.98 0.71 -0.59 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.56 7.74 -2.39 -0.02 0.54 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 0.77 8.01 -2.39 -0.02 0.75 16 33 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 34 H 0.09 2.28 6.22 -2.39 -0.01 2.27 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.10 2.72 8.14 -2.39 -0.02 2.71 16 37 H 0.07 2.19 6.45 -2.39 -0.02 2.17 16 38 H 0.00 -0.05 7.24 -2.39 -0.02 -0.06 16 39 H 0.02 1.08 7.39 -2.39 -0.02 1.06 16 40 H 0.03 1.23 6.47 -2.39 -0.02 1.21 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.04 2.09 6.84 -2.39 -0.02 2.07 16 43 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.12 0.62 7.47 -2.38 -0.02 0.61 16 46 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -71.82 384.52 4.92 -66.90 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.94 Total: 10.64 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 6.59 Total: 17.31 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -4.52 Total: -112.10 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.11 Total: -29.58 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.82 4.92 -66.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972740607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.985 kcal (2) G-P(sol) polarization free energy of solvation -71.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds