Wall clock time and date at job start Tue Mar 31 2020 13:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47104 * 2 1 4 4 C 1.40367 * 126.44238 * 265.28208 * 3 2 1 5 5 C 1.36540 * 106.70354 * 180.11593 * 4 3 2 6 6 C 1.46658 * 125.98370 * 179.91438 * 5 4 3 7 7 O 1.21697 * 119.99862 * 359.71050 * 6 5 4 8 8 N 1.34779 * 120.00021 * 179.71151 * 6 5 4 9 9 C 1.47424 * 125.64981 * 0.04198 * 8 6 5 10 10 C 1.54910 * 104.83272 * 204.09238 * 9 8 6 11 11 C 1.55160 * 101.58066 * 322.98680 * 10 9 8 12 12 H 1.08997 * 110.87259 * 277.07182 * 11 10 9 13 13 N 1.46499 * 110.71899 * 153.86642 * 11 10 9 14 14 C 1.46504 * 119.99903 * 305.02433 * 13 11 10 15 15 C 1.36933 * 120.00116 * 125.02768 * 13 11 10 16 16 H 1.08006 * 119.99951 * 334.73674 * 15 13 11 17 17 C 1.38815 * 120.00325 * 154.74051 * 15 13 11 18 18 N 1.31622 * 119.99508 * 4.29032 * 17 15 13 19 19 Si 1.86797 * 120.00036 * 184.28747 * 17 15 13 20 20 H 1.48500 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46967 * 119.99833 * 19 17 15 22 22 H 1.48495 * 109.47304 * 239.99984 * 19 17 15 23 23 C 1.47027 * 125.64567 * 179.97438 * 8 6 5 24 24 O 1.34913 * 108.02905 * 359.64350 * 5 4 3 25 25 C 1.33931 * 109.38332 * 0.23034 * 24 5 4 26 26 C 1.50697 * 125.61562 * 179.97438 * 25 24 5 27 27 C 1.53001 * 109.47153 * 269.97753 * 26 25 24 28 28 H 1.08997 * 109.46872 * 59.99975 * 1 2 3 29 29 H 1.09005 * 109.47350 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47086 * 299.99916 * 1 2 3 31 31 H 1.08992 * 109.47106 * 239.99907 * 2 1 3 32 32 H 1.08997 * 109.46872 * 120.00025 * 2 1 3 33 33 H 1.07996 * 126.64443 * 359.97438 * 4 3 2 34 34 H 1.09002 * 110.36502 * 322.92893 * 9 8 6 35 35 H 1.08999 * 110.36758 * 85.14206 * 9 8 6 36 36 H 1.08997 * 111.00406 * 204.91220 * 10 9 8 37 37 H 1.08999 * 111.00441 * 81.06123 * 10 9 8 38 38 H 1.09008 * 109.46742 * 264.50863 * 14 13 11 39 39 H 1.09002 * 109.47415 * 24.50892 * 14 13 11 40 40 H 1.08999 * 109.46882 * 144.51636 * 14 13 11 41 41 H 0.97005 * 119.99235 * 180.02562 * 18 17 15 42 42 H 1.08992 * 109.88109 * 59.56043 * 23 8 6 43 43 H 1.09001 * 109.88021 * 298.39200 * 23 8 6 44 44 H 1.08999 * 109.47020 * 29.97165 * 26 25 24 45 45 H 1.08997 * 109.47556 * 149.97662 * 26 25 24 46 46 H 1.09000 * 109.47221 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47172 * 299.99776 * 27 26 25 48 48 H 1.09003 * 109.47383 * 59.99531 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3978 2.1760 -1.1254 5 6 2.7929 3.3994 -0.6656 6 6 3.2635 4.5184 -1.4885 7 8 3.3324 4.3977 -2.6975 8 7 3.6197 5.6804 -0.9058 9 6 3.5865 5.9617 0.5409 10 6 3.4699 7.5030 0.6426 11 6 4.3629 7.9617 -0.5404 12 1 5.4135 7.9771 -0.2507 13 7 3.9422 9.2778 -1.0274 14 6 2.5530 9.4973 -1.4376 15 6 4.8474 10.3027 -1.0994 16 1 5.7148 10.3033 -0.4559 17 6 4.6502 11.3411 -1.9993 18 7 3.5519 11.3847 -2.7233 19 14 5.9436 12.6763 -2.1827 20 1 7.0759 12.3983 -1.2630 21 1 6.4377 12.6978 -3.5830 22 1 5.3457 13.9939 -1.8485 23 6 4.1070 6.8768 -1.6078 24 8 2.6689 3.4006 0.6778 25 6 2.2106 2.2091 1.0830 26 6 1.9389 1.8128 2.5113 27 6 3.2017 1.1994 3.1194 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3736 1.8513 -2.1551 34 1 2.7208 5.4846 1.0004 35 1 4.5052 5.6170 1.0156 36 1 3.8647 7.8629 1.5927 37 1 2.4386 7.8269 0.5022 38 1 2.4680 9.3678 -2.5166 39 1 1.9073 8.7783 -0.9334 40 1 2.2502 10.5091 -1.1682 41 1 3.4143 12.1101 -3.3525 42 1 3.3543 7.2236 -2.3156 43 1 5.0344 6.6468 -2.1324 44 1 1.6509 2.6942 3.0844 45 1 1.1307 1.0819 2.5382 46 1 3.0051 0.9123 4.1524 47 1 3.4897 0.3180 2.5463 48 1 4.0099 1.9303 3.0925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972740608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:00 Heat of formation + Delta-G solvation = -2.741335 kcal Electronic energy + Delta-G solvation = -27473.155579 eV Core-core repulsion = 23723.379596 eV Total energy + Delta-G solvation = -3749.775983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.85771 -39.55898 -37.43289 -35.76647 -34.78912 -33.79962 -31.71361 -31.39175 -29.81944 -29.04076 -27.64446 -26.06014 -24.93828 -24.20588 -22.97978 -22.37788 -21.55312 -20.60286 -19.26189 -19.05173 -17.22043 -17.06924 -16.57214 -16.10735 -15.68137 -15.40175 -14.99753 -14.79008 -14.26899 -13.99209 -13.91100 -13.45507 -13.38088 -13.28136 -13.03889 -12.74117 -12.70032 -12.58572 -12.46460 -12.19439 -11.91769 -11.83448 -11.69471 -11.53253 -11.43438 -11.04799 -10.90024 -10.84061 -10.56000 -10.36671 -10.27081 -10.07333 -9.88302 -9.83571 -9.80264 -8.61536 -8.54544 -8.25916 -6.81478 -5.78240 -3.26528 1.05694 2.17771 2.54755 3.21785 3.32038 3.36241 3.43092 3.44780 4.31591 4.44385 4.52614 4.55240 4.68521 4.85419 4.94970 5.02523 5.04733 5.10323 5.22292 5.28767 5.33649 5.41830 5.43525 5.48918 5.54194 5.57738 5.62089 5.70803 5.72928 5.81558 5.87335 5.91131 5.94620 5.97845 6.05107 6.32535 6.32825 6.37459 6.49627 6.61804 6.84196 6.86773 6.90368 7.45633 7.69487 7.74017 7.83022 8.23016 8.36595 9.19794 9.79652 10.29552 11.25858 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.002661 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.144747 B =10519.287313 C =10993.383125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.185 4.185 4 C -0.121 4.121 5 C -0.062 4.062 6 C 0.607 3.393 7 O -0.527 6.527 8 N -0.601 5.601 9 C 0.102 3.898 10 C -0.153 4.153 11 C 0.174 3.826 12 H 0.080 0.920 13 N -0.589 5.589 14 C 0.163 3.837 15 C -0.261 4.261 16 H 0.072 0.928 17 C 0.007 3.993 18 N -0.905 5.905 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.087 3.913 24 O -0.154 6.154 25 C 0.012 3.988 26 C -0.046 4.046 27 C -0.150 4.150 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.026 0.974 39 H -0.004 1.004 40 H 0.056 0.944 41 H 0.253 0.747 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.590 -22.217 11.993 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.186 4.186 4 C -0.142 4.142 5 C -0.114 4.114 6 C 0.395 3.605 7 O -0.406 6.406 8 N -0.333 5.333 9 C -0.021 4.021 10 C -0.193 4.193 11 C 0.063 3.937 12 H 0.098 0.902 13 N -0.310 5.310 14 C 0.019 3.981 15 C -0.390 4.390 16 H 0.089 0.911 17 C -0.191 4.191 18 N -0.550 5.550 19 Si 0.736 3.264 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.217 1.217 23 C -0.037 4.037 24 O -0.050 6.050 25 C -0.040 4.040 26 C -0.083 4.083 27 C -0.207 4.207 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.175 0.825 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.014 0.986 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.113 0.887 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.550 -21.869 11.357 25.059 hybrid contribution 0.605 0.670 -0.432 1.001 sum -3.945 -21.199 10.925 24.173 Atomic orbital electron populations 1.21765 0.94910 1.01563 1.02326 1.19924 0.95731 0.90577 1.02712 1.20118 1.08235 0.98432 0.91854 1.21755 1.00210 0.91919 1.00323 1.22076 1.11021 0.97951 0.80367 1.16256 0.78329 0.80023 0.85926 1.90876 1.55858 1.81462 1.12414 1.48450 1.63141 1.12577 1.09168 1.22434 1.01577 0.97412 0.80703 1.23372 1.02799 0.92145 1.01000 1.21364 0.96997 0.84991 0.90346 0.90209 1.43915 1.06971 1.04515 1.75564 1.20901 0.82401 0.97838 0.96977 1.19268 1.04152 0.99981 1.15600 0.91066 1.25203 0.97434 0.99791 0.96696 1.70111 1.24817 1.32942 1.27111 0.86156 0.81252 0.81309 0.77682 1.20260 1.21500 1.21674 1.23014 0.99429 0.83702 0.97604 1.84150 1.65120 1.33401 1.22287 1.22581 1.01033 0.83567 0.96803 1.20162 0.99453 1.01720 0.86974 1.21780 0.96982 1.01289 1.00692 0.92402 0.92384 0.92704 0.90850 0.91083 0.82522 0.90604 0.91521 0.90290 0.90339 0.95559 0.98605 0.92582 0.93620 0.90578 0.91800 0.89730 0.88746 0.91473 0.92153 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.05 -0.40 5.97 -27.88 -0.17 -0.57 16 3 C -0.19 -1.99 5.39 -104.93 -0.57 -2.56 16 4 C -0.12 -1.62 10.57 -39.39 -0.42 -2.04 16 5 C -0.06 -0.95 6.93 -36.80 -0.25 -1.20 16 6 C 0.61 11.08 7.82 -12.86 -0.10 10.98 16 7 O -0.53 -11.19 17.19 5.19 0.09 -11.10 16 8 N -0.60 -10.63 3.33 -172.06 -0.57 -11.20 16 9 C 0.10 1.49 6.17 -2.53 -0.02 1.48 16 10 C -0.15 -2.51 6.59 -24.58 -0.16 -2.67 16 11 C 0.17 3.46 3.44 -66.09 -0.23 3.24 16 12 H 0.08 1.55 7.94 -51.93 -0.41 1.14 16 13 N -0.59 -14.43 2.94 -171.38 -0.50 -14.94 16 14 C 0.16 4.02 7.70 59.85 0.46 4.48 16 15 C -0.26 -6.98 9.61 -15.06 -0.14 -7.13 16 16 H 0.07 1.85 7.82 -52.48 -0.41 1.44 16 17 C 0.01 0.20 5.38 -17.43 -0.09 0.11 16 18 N -0.91 -26.10 10.11 55.49 0.56 -25.54 16 19 Si 0.91 21.56 29.56 -169.99 -5.02 16.53 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.09 1.73 6.51 -3.06 -0.02 1.71 16 24 O -0.15 -2.04 7.86 5.00 0.04 -2.00 16 25 C 0.01 0.13 6.57 -35.42 -0.23 -0.10 16 26 C -0.05 -0.32 6.16 -27.88 -0.17 -0.49 16 27 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.36 7.75 -51.93 -0.40 -0.04 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.44 8.01 -51.93 -0.42 0.03 16 33 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.08 1.04 6.22 -51.93 -0.32 0.72 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.37 6.14 -51.93 -0.32 1.06 16 38 H 0.03 0.71 7.38 -51.92 -0.38 0.32 16 39 H 0.00 -0.10 6.13 -51.93 -0.32 -0.42 16 40 H 0.06 1.49 7.02 -51.93 -0.36 1.13 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.08 1.72 7.07 -51.93 -0.37 1.35 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.50 7.47 -51.93 -0.39 0.11 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -31.41 383.65 -8.90 -40.31 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.89 Total: -1.86 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.38 Total: 4.02 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.52 Total: -51.68 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.13 Total: -13.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.41 -8.90 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972740608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.564 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds