Wall clock time and date at job start Tue Mar 31 2020 13:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 O 1.33652 * 125.80080 * 59.69135 * 4 2 1 6 6 C 1.34219 * 110.91150 * 179.85631 * 5 4 2 7 7 C 1.34182 * 109.11616 * 0.40893 * 6 5 4 8 8 C 1.36407 * 125.80366 * 239.99776 * 4 2 1 9 9 C 1.47388 * 127.19237 * 359.95588 * 8 4 2 10 10 O 1.21615 * 119.99758 * 359.97438 * 9 8 4 11 11 N 1.34777 * 120.00044 * 179.97438 * 9 8 4 12 12 C 1.47021 * 125.64775 * 0.02866 * 11 9 8 13 13 C 1.54322 * 107.26803 * 181.02268 * 12 11 9 14 14 H 1.09002 * 110.71913 * 263.82849 * 13 12 11 15 15 N 1.46504 * 110.72230 * 140.55539 * 13 12 11 16 16 C 1.36932 * 119.99782 * 86.45056 * 15 13 12 17 17 H 1.08003 * 120.00444 * 359.97438 * 16 15 13 18 18 C 1.38819 * 119.99908 * 180.02562 * 16 15 13 19 19 N 1.31611 * 119.99819 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00067 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47219 * 59.99689 * 20 18 16 22 22 H 1.48501 * 109.46983 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46993 * 299.99680 * 20 18 16 24 24 C 1.55153 * 102.94705 * 22.19004 * 13 12 11 25 25 C 1.53003 * 111.00355 * 82.57163 * 24 13 12 26 26 C 1.52994 * 111.00748 * 206.38803 * 24 13 12 27 27 C 1.47423 * 125.64728 * 179.71434 * 11 9 8 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.07995 * 125.44188 * 180.14686 * 6 5 4 36 36 H 1.08003 * 127.01884 * 179.75850 * 7 6 5 37 37 H 1.09001 * 109.88489 * 300.43627 * 12 11 9 38 38 H 1.08993 * 109.88399 * 61.44855 * 12 11 9 39 39 H 0.96999 * 120.00053 * 266.45180 * 15 13 12 40 40 H 0.97000 * 120.00393 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.47004 * 60.00497 * 25 24 13 42 42 H 1.09000 * 109.47196 * 180.02562 * 25 24 13 43 43 H 1.08995 * 109.46825 * 300.00087 * 25 24 13 44 44 H 1.09004 * 109.47555 * 60.00107 * 26 24 13 45 45 H 1.09005 * 109.47480 * 179.97438 * 26 24 13 46 46 H 1.08999 * 109.47405 * 299.99729 * 26 24 13 47 47 H 1.08995 * 110.36988 * 274.75130 * 27 11 9 48 48 H 1.09003 * 110.36196 * 37.07304 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7772 -0.3596 -2.4947 6 6 2.3762 -1.1981 -3.3547 7 6 3.0402 -2.1367 -2.6629 8 6 2.8199 -1.8241 -1.2433 9 6 3.3414 -2.5600 -0.0777 10 8 3.0764 -2.1829 1.0478 11 7 4.1120 -3.6508 -0.2590 12 6 4.5085 -4.2134 -1.5582 13 6 5.3622 -5.4670 -1.2731 14 1 6.4246 -5.2247 -1.3017 15 7 5.0471 -6.5359 -2.2241 16 6 5.6883 -6.5878 -3.4329 17 1 6.4260 -5.8405 -3.6855 18 6 5.3893 -7.6004 -4.3342 19 7 4.4893 -8.5102 -4.0271 20 14 6.2645 -7.6717 -5.9830 21 1 7.7265 -7.8083 -5.7619 22 1 5.7691 -8.8386 -6.7563 23 1 5.9930 -6.4243 -6.7418 24 6 4.9283 -5.8640 0.1626 25 6 3.6344 -6.6803 0.1384 26 6 6.0422 -6.6284 0.8806 27 6 4.7021 -4.4736 0.8125 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 2.3277 -1.1308 -4.4314 36 1 3.6185 -2.9547 -3.0665 37 1 3.6219 -4.4905 -2.1284 38 1 5.0939 -3.4822 -2.1156 39 1 4.3843 -7.2069 -1.9974 40 1 4.2806 -9.2180 -4.6566 41 1 3.7888 -7.5887 -0.4437 42 1 3.3527 -6.9449 1.1576 43 1 2.8398 -6.0883 -0.3157 44 1 6.9307 -6.0003 0.9453 45 1 5.7117 -6.8941 1.8848 46 1 6.2780 -7.5352 0.3236 47 1 5.6499 -4.0468 1.1402 48 1 4.0115 -4.5555 1.6518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996692607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:59 Heat of formation + Delta-G solvation = -11.450541 kcal Electronic energy + Delta-G solvation = -28261.497232 eV Core-core repulsion = 24511.343590 eV Total energy + Delta-G solvation = -3750.153642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.53875 -39.87409 -37.86030 -35.55823 -34.13896 -33.46442 -32.34898 -30.83849 -29.11545 -27.59700 -27.31447 -27.00606 -26.56257 -24.10352 -23.00243 -22.51281 -21.15813 -20.48071 -18.91057 -18.40301 -17.27576 -17.03581 -16.21057 -16.03958 -15.67275 -15.31731 -14.88566 -14.58102 -14.30611 -14.07117 -13.78353 -13.61754 -13.25939 -13.20961 -12.90303 -12.71759 -12.53649 -12.42253 -12.35216 -12.05037 -11.98846 -11.55240 -11.37152 -11.36633 -11.16059 -11.06990 -11.01568 -10.90716 -10.56012 -10.45532 -10.27933 -9.92231 -9.72958 -9.66338 -9.59712 -9.00620 -8.61162 -8.21533 -7.11078 -5.87928 -3.18266 1.45501 2.18971 2.84275 3.30752 3.37014 3.42598 3.43108 3.55251 4.43190 4.49245 4.67783 4.77788 4.94649 4.97540 5.06899 5.08078 5.19433 5.29544 5.46214 5.48244 5.51648 5.59027 5.64677 5.65100 5.70863 5.78275 5.80398 5.84140 5.86901 5.97565 6.03077 6.05739 6.07085 6.12360 6.21620 6.23962 6.33101 6.36715 6.41204 6.45361 6.62127 6.65210 6.74797 6.89138 7.12089 7.60057 7.83824 8.30243 8.42255 9.42443 9.96999 10.32261 11.34066 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.003941 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.571978 B = 7102.714495 C = 8538.449309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 C -0.145 4.145 4 C 0.078 3.922 5 O -0.176 6.176 6 C -0.048 4.048 7 C -0.189 4.189 8 C -0.235 4.235 9 C 0.602 3.398 10 O -0.558 6.558 11 N -0.601 5.601 12 C 0.071 3.929 13 C 0.179 3.821 14 H 0.065 0.935 15 N -0.711 5.711 16 C -0.250 4.250 17 H 0.071 0.929 18 C -0.006 4.006 19 N -0.929 5.929 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.086 4.086 25 C -0.132 4.132 26 C -0.129 4.129 27 C 0.119 3.881 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.207 0.793 36 H 0.172 0.828 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.390 0.610 40 H 0.257 0.743 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 14.199 7.478 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 C -0.202 4.202 4 C 0.025 3.975 5 O -0.072 6.072 6 C -0.114 4.114 7 C -0.207 4.207 8 C -0.239 4.239 9 C 0.393 3.607 10 O -0.440 6.440 11 N -0.333 5.333 12 C -0.055 4.055 13 C 0.066 3.934 14 H 0.083 0.917 15 N -0.353 5.353 16 C -0.381 4.381 17 H 0.089 0.911 18 C -0.203 4.203 19 N -0.577 5.577 20 Si 0.737 3.263 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.088 4.088 25 C -0.189 4.189 26 C -0.186 4.186 27 C -0.003 4.003 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.224 0.776 36 H 0.189 0.811 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.227 0.773 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.355 14.649 7.790 17.153 hybrid contribution 0.410 -0.526 -1.328 1.486 sum -3.945 14.123 6.463 16.025 Atomic orbital electron populations 1.21834 0.93608 1.02510 1.02290 1.20284 0.96436 0.96190 0.92230 1.21830 1.01557 0.94499 1.02296 1.22717 0.96282 0.94454 0.84063 1.83707 1.59578 1.48793 1.15095 1.23917 0.99719 0.92265 0.95470 1.23596 1.03762 1.01942 0.91441 1.21099 1.08303 1.00496 0.94001 1.16848 0.77505 0.79112 0.87209 1.90656 1.60693 1.67985 1.24634 1.48209 1.49023 1.26671 1.09373 1.23598 1.00276 0.97390 0.84193 1.21245 0.96292 0.87798 0.88024 0.91666 1.42527 1.48453 1.28863 1.15506 1.19209 1.17083 1.09214 0.92555 0.91099 1.24738 0.99226 0.97623 0.98730 1.69637 1.35172 1.16386 1.36471 0.86287 0.79121 0.77028 0.83828 1.21178 1.21682 1.21203 1.22019 0.96719 0.93455 0.96571 1.21641 0.95775 1.00537 1.00977 1.21645 0.96889 1.00732 0.99376 1.22353 0.97792 0.89702 0.90502 0.92207 0.91550 0.92343 0.85164 0.91550 0.92279 0.92361 0.77643 0.81092 0.90444 0.92108 0.77275 0.93279 0.90885 0.93281 0.92770 0.92823 0.93075 0.91319 0.91621 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.18 37.16 0.34 -1.15 16 2 C -0.03 -0.41 3.25 -91.77 -0.30 -0.71 16 3 C -0.14 -1.45 9.18 37.16 0.34 -1.11 16 4 C 0.08 1.12 5.88 -34.97 -0.21 0.91 16 5 O -0.18 -2.36 10.52 7.64 0.08 -2.28 16 6 C -0.05 -0.60 12.03 29.30 0.35 -0.25 16 7 C -0.19 -2.78 9.42 -37.45 -0.35 -3.13 16 8 C -0.23 -3.77 6.24 -103.28 -0.64 -4.42 16 9 C 0.60 10.57 7.84 -12.54 -0.10 10.47 16 10 O -0.56 -10.52 14.76 5.26 0.08 -10.44 16 11 N -0.60 -10.07 3.31 -171.66 -0.57 -10.63 16 12 C 0.07 1.23 4.43 -3.07 -0.01 1.22 16 13 C 0.18 3.29 2.84 -66.10 -0.19 3.10 16 14 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 15 N -0.71 -16.20 5.08 -51.65 -0.26 -16.46 16 16 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 17 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 19 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 20 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 24 C -0.09 -1.36 0.87 -152.24 -0.13 -1.49 16 25 C -0.13 -2.15 7.94 37.16 0.30 -1.86 16 26 C -0.13 -1.81 8.68 37.15 0.32 -1.49 16 27 C 0.12 1.83 5.85 -2.41 -0.01 1.81 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.13 1.84 5.52 -51.93 -0.29 1.55 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.21 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.17 2.58 4.87 -52.48 -0.26 2.32 16 37 H 0.08 1.46 6.74 -51.93 -0.35 1.11 16 38 H 0.06 1.02 7.01 -51.93 -0.36 0.65 16 39 H 0.39 9.46 5.26 -40.82 -0.21 9.24 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.07 1.33 6.34 -51.93 -0.33 1.00 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 44 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 48 H 0.07 1.14 7.95 -51.93 -0.41 0.72 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -29.64 379.88 -7.44 -37.08 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.65 Total: 11.47 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.54 Total: -4.89 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.11 Total: -52.86 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.16 Total: -12.72 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.64 -7.44 -37.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996692607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.626 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds