Wall clock time and date at job start Tue Mar 31 2020 13:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46623 * 2 1 4 4 C 1.50703 * 109.46711 * 180.02562 * 3 2 1 5 5 O 1.33652 * 125.80270 * 269.99949 * 4 3 2 6 6 C 1.34209 * 110.91314 * 180.02562 * 5 4 3 7 7 C 1.34179 * 109.12279 * 359.75096 * 6 5 4 8 8 C 1.36412 * 125.80450 * 90.00227 * 4 3 2 9 9 C 1.47386 * 127.19152 * 359.96518 * 8 4 3 10 10 O 1.21612 * 119.99718 * 7.67717 * 9 8 4 11 11 N 1.34768 * 120.00002 * 187.68199 * 9 8 4 12 12 C 1.46503 * 120.00223 * 5.73552 * 11 9 8 13 13 C 1.53009 * 109.46976 * 270.85741 * 12 11 9 14 14 C 1.46501 * 119.99794 * 185.73863 * 11 9 8 15 15 H 1.09000 * 110.88500 * 183.87962 * 14 11 9 16 16 C 1.55154 * 111.00804 * 59.99610 * 14 11 9 17 17 C 1.54322 * 102.94620 * 206.38580 * 16 14 11 18 18 N 1.47027 * 107.26768 * 22.19372 * 17 16 14 19 19 C 1.36937 * 125.64620 * 181.02323 * 18 17 16 20 20 H 1.08000 * 120.00136 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00041 * 359.74965 * 19 18 17 22 22 N 1.31623 * 119.99930 * 0.27474 * 21 19 18 23 23 Si 1.86796 * 119.99992 * 180.27681 * 21 19 18 24 24 H 1.48504 * 109.47344 * 89.99828 * 23 21 19 25 25 H 1.48501 * 109.46872 * 209.99761 * 23 21 19 26 26 H 1.48501 * 109.47251 * 329.99789 * 23 21 19 27 27 C 1.47426 * 108.70525 * 1.28282 * 18 17 16 28 28 H 1.09006 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46771 * 299.99610 * 1 2 3 30 30 H 1.08997 * 109.47567 * 59.99452 * 1 2 3 31 31 H 1.09000 * 109.46771 * 240.00390 * 2 1 3 32 32 H 1.08997 * 109.47567 * 120.00548 * 2 1 3 33 33 H 1.09000 * 109.47228 * 60.00670 * 3 2 1 34 34 H 1.08999 * 109.47659 * 299.99990 * 3 2 1 35 35 H 1.08002 * 125.44022 * 180.02562 * 6 5 4 36 36 H 1.07998 * 127.02384 * 180.26579 * 7 6 5 37 37 H 1.09001 * 109.47118 * 30.85601 * 12 11 9 38 38 H 1.09003 * 109.47193 * 150.86058 * 12 11 9 39 39 H 1.09001 * 109.47083 * 299.99881 * 13 12 11 40 40 H 1.09000 * 109.46753 * 59.99627 * 13 12 11 41 41 H 1.08995 * 109.46737 * 179.97438 * 13 12 11 42 42 H 1.08998 * 110.72075 * 88.02198 * 16 14 11 43 43 H 1.08997 * 110.86911 * 324.82570 * 16 14 11 44 44 H 1.08998 * 109.88084 * 262.77742 * 17 16 14 45 45 H 1.08999 * 109.88420 * 141.61103 * 17 16 14 46 46 H 0.96997 * 119.99872 * 180.02562 * 22 21 19 47 47 H 1.08999 * 110.36219 * 94.48187 * 27 18 17 48 48 H 1.08997 * 110.37087 * 216.80439 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.3292 1.4425 1.0830 6 6 5.6261 1.4431 0.7376 7 6 5.7246 1.4381 -0.6006 8 6 4.3445 1.4428 -1.1073 9 6 3.9129 1.4424 -2.5166 10 8 2.7367 1.5824 -2.7923 11 7 4.8216 1.2866 -3.4995 12 6 6.2177 0.9926 -3.1667 13 6 6.9863 2.3034 -2.9878 14 6 4.4133 1.4115 -4.9010 15 1 5.2458 1.1916 -5.5693 16 6 3.8280 2.8198 -5.1864 17 6 2.8801 2.5653 -6.3773 18 7 2.5340 1.1364 -6.3621 19 6 1.7276 0.5009 -7.2682 20 1 1.5333 -0.5569 -7.1695 21 6 1.1551 1.2174 -8.3102 22 7 1.3918 2.5066 -8.4304 23 14 0.0488 0.3521 -9.5417 24 1 -1.3567 0.4019 -9.0649 25 1 0.1490 1.0302 -10.8590 26 1 0.4746 -1.0638 -9.6801 27 6 3.1939 0.5024 -5.2062 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 6.4577 1.4427 1.4267 36 1 6.6322 1.4333 -1.1858 37 1 6.2574 0.4188 -2.2408 38 1 6.6691 0.4138 -3.9725 39 1 6.9466 2.8772 -3.9138 40 1 6.5348 2.8823 -2.1821 41 1 8.0249 2.0846 -2.7398 42 1 4.6184 3.5168 -5.4648 43 1 3.2736 3.1918 -4.3248 44 1 3.3832 2.8149 -7.3115 45 1 1.9775 3.1665 -6.2678 46 1 0.9915 3.0074 -9.1583 47 1 2.5170 0.4725 -4.3524 48 1 3.5260 -0.5033 -5.4636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034019607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:35 Heat of formation + Delta-G solvation = 5.691862 kcal Electronic energy + Delta-G solvation = -28535.854434 eV Core-core repulsion = 24786.444142 eV Total energy + Delta-G solvation = -3749.410292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.57527 -41.16962 -38.47484 -37.12177 -36.06540 -34.66316 -33.40600 -31.72667 -31.19906 -30.75358 -28.97116 -27.35602 -26.45020 -24.84572 -23.55324 -23.02661 -22.60130 -22.01051 -21.26271 -19.72753 -18.92038 -18.25952 -17.51138 -17.15212 -16.91913 -16.64385 -16.18343 -15.90640 -15.79258 -15.52913 -15.20788 -14.93489 -14.54460 -14.25900 -14.16852 -14.10111 -13.81679 -13.64052 -13.33929 -12.95052 -12.90717 -12.87548 -12.76229 -12.56122 -12.37380 -12.31097 -12.24379 -12.15150 -12.04189 -12.02519 -11.81055 -11.64354 -11.53065 -10.73574 -10.63768 -10.46418 -9.71211 -9.40457 -8.83247 -7.84504 -5.20060 0.37885 1.19653 1.43443 1.47116 1.55542 1.82647 2.08100 2.36158 2.50791 3.32671 3.58000 3.60323 3.72805 3.91242 3.93404 4.02483 4.04874 4.08152 4.11196 4.23299 4.31887 4.39901 4.47608 4.54899 4.64770 4.67671 4.72179 4.73778 4.78459 4.87318 4.90657 4.96073 4.97729 5.01784 5.04626 5.19002 5.23500 5.25567 5.36476 5.41324 5.42331 5.47673 5.63671 5.69922 5.79741 6.10729 6.18638 6.54044 7.09294 7.29133 7.76586 8.42981 9.26172 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.003942 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.385936 B = 7101.210987 C = 8514.563655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.050 4.050 4 C 0.067 3.933 5 O -0.180 6.180 6 C -0.030 4.030 7 C -0.215 4.215 8 C -0.258 4.258 9 C 0.575 3.425 10 O -0.562 6.562 11 N -0.593 5.593 12 C 0.082 3.918 13 C -0.177 4.177 14 C 0.154 3.846 15 H 0.111 0.889 16 C -0.133 4.133 17 C 0.197 3.803 18 N -0.622 5.622 19 C -0.243 4.243 20 H 0.079 0.921 21 C -0.067 4.067 22 N -0.953 5.953 23 Si 0.982 3.018 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.266 1.266 27 C 0.117 3.883 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.253 0.747 36 H 0.202 0.798 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.019 0.981 45 H -0.005 1.005 46 H 0.247 0.753 47 H 0.040 0.960 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.297 -2.921 22.188 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.087 4.087 4 C 0.013 3.987 5 O -0.076 6.076 6 C -0.095 4.095 7 C -0.233 4.233 8 C -0.263 4.263 9 C 0.367 3.633 10 O -0.443 6.443 11 N -0.325 5.325 12 C -0.039 4.039 13 C -0.235 4.235 14 C 0.049 3.951 15 H 0.129 0.871 16 C -0.172 4.172 17 C 0.071 3.929 18 N -0.349 5.349 19 C -0.372 4.372 20 H 0.097 0.903 21 C -0.259 4.259 22 N -0.602 5.602 23 Si 0.810 3.190 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.191 1.191 27 C -0.009 4.009 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.268 0.732 36 H 0.218 0.782 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.013 0.987 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 13.515 -2.829 22.148 26.099 hybrid contribution -0.881 0.000 -1.404 1.658 sum 12.634 -2.829 20.743 24.452 Atomic orbital electron populations 1.21726 0.94300 1.02453 1.02071 1.21362 0.96963 0.94435 1.01707 1.20458 0.83814 0.99599 1.04824 1.22852 0.94053 0.98255 0.83512 1.83765 1.18222 1.71173 1.34453 1.24858 0.83352 1.04309 0.96994 1.24062 0.96776 1.07255 0.95215 1.21236 0.95503 1.16949 0.92565 1.17735 0.84833 0.75908 0.84864 1.90769 1.18668 1.50910 1.83935 1.47736 1.10161 1.70133 1.04428 1.22435 0.78926 0.98650 1.03864 1.22409 1.01507 0.97124 1.02473 1.22083 0.96646 0.94882 0.81468 0.87095 1.22959 0.98858 0.97163 0.98230 1.20748 0.93965 0.84513 0.93661 1.44617 1.56176 1.05665 1.28393 1.19457 1.21031 0.93182 1.03531 0.90340 1.25684 1.02437 0.96683 1.01140 1.70206 1.48915 1.07471 1.33584 0.85030 0.78271 0.77921 0.77815 1.21570 1.21580 1.19111 1.22164 0.93826 0.94628 0.90286 0.91682 0.90784 0.94113 0.94049 0.90386 0.88103 0.89416 0.73159 0.78173 0.87398 0.88982 0.93017 0.92081 0.87957 0.89979 0.92762 0.96273 0.98661 0.94387 0.94188 0.94929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.91 71.98 0.71 -2.52 16 2 C -0.11 -2.54 5.92 30.60 0.18 -2.36 16 3 C -0.05 -1.25 5.30 29.85 0.16 -1.10 16 4 C 0.07 1.68 6.63 25.26 0.17 1.85 16 5 O -0.18 -3.63 10.52 4.53 0.05 -3.58 16 6 C -0.03 -0.41 12.03 66.89 0.80 0.39 16 7 C -0.22 -3.67 7.50 23.65 0.18 -3.50 16 8 C -0.26 -6.91 6.06 -18.99 -0.12 -7.02 16 9 C 0.58 19.69 6.92 86.65 0.60 20.29 16 10 O -0.56 -24.26 10.90 -4.07 -0.04 -24.30 16 11 N -0.59 -17.90 2.56 -793.57 -2.03 -19.93 16 12 C 0.08 1.55 5.58 86.38 0.48 2.03 16 13 C -0.18 -2.64 8.69 71.99 0.63 -2.02 16 14 C 0.15 5.76 3.57 46.46 0.17 5.93 16 15 H 0.11 3.72 7.85 -2.39 -0.02 3.70 16 16 C -0.13 -5.65 6.33 31.78 0.20 -5.45 16 17 C 0.20 10.81 5.37 86.73 0.47 11.27 16 18 N -0.62 -35.47 3.39 -691.54 -2.35 -37.81 16 19 C -0.24 -14.77 10.28 84.03 0.86 -13.91 16 20 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 21 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 22 N -0.95 -60.65 10.31 21.65 0.22 -60.43 16 23 Si 0.98 48.23 29.55 68.60 2.03 50.26 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 27 C 0.12 5.54 6.58 86.93 0.57 6.11 16 28 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 2.79 6.36 -2.39 -0.02 2.77 16 35 H 0.25 0.74 8.06 -2.91 -0.02 0.71 16 36 H 0.20 2.34 3.61 -2.91 -0.01 2.33 16 37 H 0.11 1.70 4.80 -2.39 -0.01 1.69 16 38 H 0.09 1.51 7.91 -2.39 -0.02 1.49 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 1.02 6.23 -2.39 -0.01 1.00 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.05 2.47 6.46 -2.39 -0.02 2.45 16 44 H 0.02 1.13 7.39 -2.39 -0.02 1.11 16 45 H 0.00 -0.31 7.50 -2.39 -0.02 -0.33 16 46 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 47 H 0.04 2.09 5.33 -2.39 -0.01 2.08 16 48 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -80.62 369.77 5.36 -75.26 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.96 Total: 14.11 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.53 Total: 6.42 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -4.16 Total: -118.17 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: 0.00 Total: -27.88 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -80.62 5.36 -75.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034019607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.955 kcal (2) G-P(sol) polarization free energy of solvation -80.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds