Wall clock time and date at job start Tue Mar 31 2020 13:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47119 * 2 1 4 4 C 1.35129 * 125.61664 * 90.02566 * 3 2 1 5 5 C 1.40367 * 107.11376 * 179.78249 * 4 3 2 6 6 C 1.50694 * 126.64518 * 180.22718 * 5 4 3 7 7 C 1.36545 * 106.70625 * 0.34808 * 5 4 3 8 8 C 1.46658 * 125.98425 * 179.90834 * 7 5 4 9 9 O 1.21695 * 120.00007 * 352.90625 * 8 7 5 10 10 N 1.34778 * 119.99752 * 172.90916 * 8 7 5 11 11 C 1.46925 * 120.63059 * 353.43897 * 10 8 7 12 12 C 1.53191 * 108.77612 * 126.41714 * 11 10 8 13 13 C 1.53034 * 109.31500 * 54.63285 * 12 11 10 14 14 H 1.09000 * 109.45855 * 58.64036 * 13 12 11 15 15 N 1.46497 * 109.46281 * 178.61760 * 13 12 11 16 16 C 1.36938 * 119.99694 * 275.02860 * 15 13 12 17 17 H 1.08002 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99752 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99751 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00218 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47309 * 89.99926 * 20 18 16 22 22 H 1.48504 * 109.46867 * 329.99986 * 20 18 16 23 23 H 1.48496 * 109.47126 * 210.00327 * 20 18 16 24 24 C 1.53044 * 109.52769 * 298.63250 * 13 12 11 25 25 C 1.46927 * 120.62949 * 173.46271 * 10 8 7 26 26 H 1.09000 * 109.58768 * 353.51877 * 25 10 8 27 27 C 1.53003 * 109.58302 * 113.79665 * 25 10 8 28 28 O 1.33926 * 125.61365 * 270.02872 * 3 2 1 29 29 H 1.09005 * 109.46986 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46611 * 299.99722 * 1 2 3 31 31 H 1.08994 * 109.46826 * 59.99794 * 1 2 3 32 32 H 1.08998 * 109.47129 * 239.99559 * 2 1 3 33 33 H 1.09005 * 109.47211 * 119.99867 * 2 1 3 34 34 H 1.08000 * 126.44330 * 0.02562 * 4 3 2 35 35 H 1.09002 * 109.47388 * 270.14831 * 6 5 4 36 36 H 1.08998 * 109.47481 * 30.15346 * 6 5 4 37 37 H 1.09003 * 109.47541 * 150.15287 * 6 5 4 38 38 H 1.08998 * 109.58635 * 6.62633 * 11 10 8 39 39 H 1.09008 * 109.58682 * 246.20233 * 11 10 8 40 40 H 1.09007 * 109.49527 * 294.68109 * 12 11 10 41 41 H 1.09005 * 109.49696 * 174.58745 * 12 11 10 42 42 H 0.97000 * 120.00411 * 95.03181 * 15 13 12 43 43 H 0.96998 * 119.99432 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.49735 * 181.32436 * 24 13 12 45 45 H 1.08996 * 109.49785 * 301.41805 * 24 13 12 46 46 H 1.09000 * 109.47193 * 60.00359 * 27 25 10 47 47 H 1.09006 * 109.46750 * 179.97438 * 27 25 10 48 48 H 1.08997 * 109.47443 * 299.99926 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2952 2.1626 1.0985 5 6 2.7435 3.4160 0.6530 6 6 3.1624 4.5795 1.5142 7 6 2.7239 3.3775 -0.7117 8 6 3.1106 4.4702 -1.6102 9 8 3.3672 5.5696 -1.1559 10 7 3.1816 4.2568 -2.9391 11 6 3.0156 2.9050 -3.4901 12 6 1.9202 2.9398 -4.5605 13 6 2.2652 4.0056 -5.6032 14 1 3.2326 3.7766 -6.0501 15 7 1.2365 4.0190 -6.6461 16 6 1.3185 3.1483 -7.6999 17 1 2.1417 2.4520 -7.7623 18 6 0.3441 3.1614 -8.6884 19 7 0.4232 2.3249 -9.7016 20 14 -1.0794 4.3662 -8.5810 21 1 -0.7132 5.6282 -9.2728 22 1 -1.3790 4.6524 -7.1549 23 1 -2.2777 3.7758 -9.2296 24 6 2.3268 5.3787 -4.9301 25 6 3.4270 5.3716 -3.8642 26 1 3.4122 6.3127 -3.3145 27 6 4.7903 5.1908 -4.5349 28 8 2.2918 2.1563 -1.0888 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.1851 1.8487 2.1260 35 1 2.2955 5.2054 1.7261 36 1 3.5793 4.2074 2.4500 37 1 3.9153 5.1675 0.9894 38 1 2.7268 2.2188 -2.6939 39 1 3.9533 2.5750 -3.9375 40 1 0.9646 3.1818 -4.0953 41 1 1.8534 1.9654 -5.0445 42 1 0.4973 4.6447 -6.5904 43 1 -0.2580 2.3338 -10.3921 44 1 2.5493 6.1405 -5.6774 45 1 1.3674 5.5975 -4.4615 46 1 4.8013 4.2517 -5.0882 47 1 4.9702 6.0185 -5.2211 48 1 5.5702 5.1732 -3.7737 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044819607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:38 Heat of formation + Delta-G solvation = -28.100322 kcal Electronic energy + Delta-G solvation = -28164.146121 eV Core-core repulsion = 24413.270490 eV Total energy + Delta-G solvation = -3750.875631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.85932 -41.26754 -39.07979 -36.49554 -35.35012 -34.91195 -33.97438 -33.49176 -31.61541 -30.27279 -28.96411 -28.36819 -25.98657 -25.26979 -24.44218 -23.38328 -22.48497 -22.15937 -20.71401 -20.28236 -19.37558 -18.50011 -17.53569 -17.47251 -16.84521 -16.49450 -16.03046 -15.88330 -15.38593 -15.32945 -15.21042 -14.91927 -14.67687 -14.43419 -14.29034 -14.21742 -13.97473 -13.84674 -13.75717 -13.37726 -13.34024 -13.02690 -12.97657 -12.94260 -12.63810 -12.48129 -12.37614 -12.20537 -12.08746 -11.95087 -11.85812 -11.77070 -11.21740 -11.13243 -10.90902 -10.64091 -9.90154 -9.39117 -9.31983 -8.01986 -5.35047 -0.02448 1.31427 1.37596 1.39368 1.46498 1.49163 1.96496 2.07073 2.47988 3.29026 3.33648 3.47595 3.63213 3.77716 3.83187 3.97742 4.01972 4.17515 4.20036 4.25541 4.32876 4.35203 4.44909 4.46884 4.48361 4.59546 4.65500 4.72917 4.73831 4.76622 4.90474 4.95155 4.97549 4.99232 5.01388 5.02190 5.15355 5.18391 5.24558 5.27280 5.35238 5.43699 5.49981 5.60424 5.77909 5.91973 6.22048 6.27165 6.91049 7.07638 7.83830 8.02648 9.19441 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.003803 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.675148 B = 7361.735647 C = 8664.266795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C 0.020 3.980 4 C -0.223 4.223 5 C -0.086 4.086 6 C -0.089 4.089 7 C -0.119 4.119 8 C 0.598 3.402 9 O -0.552 6.552 10 N -0.594 5.594 11 C 0.101 3.899 12 C -0.137 4.137 13 C 0.177 3.823 14 H 0.057 0.943 15 N -0.752 5.752 16 C -0.225 4.225 17 H 0.062 0.938 18 C -0.061 4.061 19 N -0.983 5.983 20 Si 0.950 3.050 21 H -0.278 1.278 22 H -0.258 1.258 23 H -0.297 1.297 24 C -0.128 4.128 25 C 0.147 3.853 26 H 0.098 0.902 27 C -0.156 4.156 28 O -0.163 6.163 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.183 0.817 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.363 0.637 43 H 0.257 0.743 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.370 -1.079 25.565 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.031 4.031 4 C -0.241 4.241 5 C -0.089 4.089 6 C -0.146 4.146 7 C -0.170 4.170 8 C 0.389 3.611 9 O -0.434 6.434 10 N -0.325 5.325 11 C -0.021 4.021 12 C -0.178 4.178 13 C 0.070 3.930 14 H 0.075 0.925 15 N -0.394 5.394 16 C -0.356 4.356 17 H 0.080 0.920 18 C -0.253 4.253 19 N -0.634 5.634 20 Si 0.778 3.222 21 H -0.204 1.204 22 H -0.183 1.183 23 H -0.224 1.224 24 C -0.167 4.167 25 C 0.044 3.956 26 H 0.116 0.884 27 C -0.214 4.214 28 O -0.061 6.061 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.200 0.800 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.196 0.804 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.571 -0.735 25.315 25.931 hybrid contribution -1.137 0.479 -0.683 1.411 sum 4.434 -0.256 24.631 25.028 Atomic orbital electron populations 1.21794 0.93390 1.03558 1.02034 1.20430 0.96672 0.85276 1.06118 1.23728 0.99033 0.96116 0.84250 1.21745 1.08457 0.92950 1.00984 1.20961 0.98273 0.97835 0.91795 1.20397 1.01904 0.93860 0.98401 1.21709 1.14582 0.86236 0.94434 1.16893 0.77171 0.85704 0.81381 1.90781 1.52661 1.24007 1.75909 1.48182 1.69338 1.09964 1.04993 1.22289 0.99343 0.82717 0.97771 1.22396 0.97938 1.00990 0.96432 1.20406 0.91867 0.93378 0.87386 0.92521 1.42833 1.28345 1.43192 1.25023 1.19027 1.06855 1.11256 0.98419 0.92045 1.25413 1.01723 1.01194 0.96925 1.69871 1.37593 1.41854 1.14045 0.85485 0.79425 0.79065 0.78223 1.20445 1.18289 1.22430 1.22157 0.98666 0.98027 0.97832 1.21218 0.95265 0.89842 0.89300 0.88379 1.22107 0.94939 1.03435 1.00870 1.84143 1.65551 1.21971 1.34474 0.89573 0.91752 0.94100 0.89279 0.85657 0.79992 0.90580 0.88983 0.91609 0.87009 0.90154 0.93288 0.91853 0.80440 0.93421 0.89452 0.92371 0.92167 0.89823 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.90 71.98 0.71 -1.14 16 2 C -0.05 -0.57 6.47 29.85 0.19 -0.38 16 3 C 0.02 0.39 6.57 24.97 0.16 0.55 16 4 C -0.22 -4.01 10.73 22.07 0.24 -3.78 16 5 C -0.09 -2.00 6.20 -19.74 -0.12 -2.12 16 6 C -0.09 -1.78 9.75 71.23 0.69 -1.09 16 7 C -0.12 -3.28 6.83 24.07 0.16 -3.11 16 8 C 0.60 18.35 7.65 86.44 0.66 19.01 16 9 O -0.55 -18.73 14.28 -4.33 -0.06 -18.79 16 10 N -0.59 -17.12 2.68 -799.71 -2.14 -19.26 16 11 C 0.10 2.82 5.91 86.36 0.51 3.33 16 12 C -0.14 -4.64 5.66 30.67 0.17 -4.47 16 13 C 0.18 6.51 2.52 45.02 0.11 6.62 16 14 H 0.06 2.14 6.43 -2.39 -0.02 2.13 16 15 N -0.75 -34.47 4.92 -322.82 -1.59 -36.06 16 16 C -0.22 -12.52 10.41 84.03 0.87 -11.64 16 17 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 18 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 19 N -0.98 -62.46 13.97 21.65 0.30 -62.15 16 20 Si 0.95 45.59 27.73 68.60 1.90 47.49 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.26 -11.38 6.52 99.48 0.65 -10.73 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 24 C -0.13 -3.92 5.02 30.67 0.15 -3.76 16 25 C 0.15 4.03 3.19 44.97 0.14 4.17 16 26 H 0.10 2.75 7.05 -2.39 -0.02 2.73 16 27 C -0.16 -3.73 9.03 71.98 0.65 -3.08 16 28 O -0.16 -4.11 7.14 -5.00 -0.04 -4.15 16 29 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.57 6.62 -2.39 -0.02 1.55 16 38 H 0.11 3.02 3.80 -50.86 -0.19 2.83 16 39 H 0.08 2.08 7.50 -2.38 -0.02 2.07 16 40 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.36 16.29 5.66 -92.71 -0.52 15.76 16 43 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 45 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 1.52 5.72 -2.39 -0.01 1.51 16 47 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 48 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -70.76 375.82 4.36 -66.40 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.19 Total: 30.49 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.79 Total: -3.97 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -3.43 Total: -117.47 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.10 Total: -22.94 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Total: -70.76 4.36 -66.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044819607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.304 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds