Wall clock time and date at job start Tue Mar 31 2020 12:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33654 * 125.80545 * 2 1 4 4 C 1.34210 * 110.91172 * 180.02562 * 3 2 1 5 5 C 1.50704 * 125.43943 * 180.26443 * 4 3 2 6 6 C 1.52996 * 109.47057 * 299.69648 * 5 4 3 7 7 C 1.52999 * 109.46580 * 59.69501 * 5 4 3 8 8 C 1.34184 * 109.12359 * 0.02562 * 4 3 2 9 9 C 1.36423 * 125.80166 * 180.02562 * 2 1 3 10 10 C 1.47384 * 127.18780 * 359.94079 * 9 2 1 11 11 O 1.21604 * 119.99979 * 359.97438 * 10 9 2 12 12 N 1.34780 * 119.99585 * 180.02562 * 10 9 2 13 13 C 1.46496 * 119.99891 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47463 * 179.97438 * 13 12 10 15 15 H 1.09011 * 112.84623 * 316.19469 * 14 13 12 16 16 C 1.53775 * 113.61850 * 87.49819 * 14 13 12 17 17 C 1.53776 * 87.08539 * 139.98280 * 16 14 13 18 18 H 1.09004 * 113.68629 * 89.12327 * 17 16 14 19 19 N 1.46490 * 113.61796 * 220.02194 * 17 16 14 20 20 C 1.36943 * 120.00092 * 252.49705 * 19 17 16 21 21 H 1.08001 * 119.99742 * 0.02562 * 20 19 17 22 22 C 1.38808 * 120.00300 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00224 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99997 * 359.97438 * 22 20 19 25 25 H 1.48491 * 109.46750 * 90.00248 * 24 22 20 26 26 H 1.48499 * 109.47034 * 210.00508 * 24 22 20 27 27 H 1.48496 * 109.46806 * 330.00298 * 24 22 20 28 28 C 1.53777 * 113.61929 * 184.99922 * 14 13 12 29 29 H 1.08997 * 109.46574 * 269.95982 * 1 2 3 30 30 H 1.08994 * 109.46881 * 29.95019 * 1 2 3 31 31 H 1.08994 * 109.47156 * 149.95577 * 1 2 3 32 32 H 1.09003 * 109.47158 * 179.68861 * 5 4 3 33 33 H 1.08997 * 109.47111 * 59.99475 * 6 5 4 34 34 H 1.09000 * 109.46863 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.46998 * 299.99567 * 6 5 4 36 36 H 1.08994 * 109.47462 * 299.99548 * 7 5 4 37 37 H 1.08997 * 109.47537 * 60.00344 * 7 5 4 38 38 H 1.09006 * 109.46707 * 180.02562 * 7 5 4 39 39 H 1.08001 * 127.01738 * 179.97438 * 8 4 3 40 40 H 0.96995 * 120.00080 * 359.97438 * 12 10 9 41 41 H 1.09005 * 109.46630 * 299.99659 * 13 12 10 42 42 H 1.09000 * 109.47064 * 59.99426 * 13 12 10 43 43 H 1.09005 * 113.61533 * 254.53818 * 16 14 13 44 44 H 1.09006 * 113.61462 * 25.42997 * 16 14 13 45 45 H 0.96993 * 120.00166 * 72.49341 * 19 17 16 46 46 H 0.96999 * 120.00476 * 179.97438 * 23 22 20 47 47 H 1.09004 * 113.60991 * 334.56585 * 28 14 13 48 48 H 1.08999 * 113.61945 * 105.38226 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 4.7460 1.7009 0.0049 6 6 4.6835 2.5825 -1.2440 7 6 4.6728 2.5808 1.2545 8 6 3.6849 -0.5992 -0.0015 9 6 2.3051 -1.1065 -0.0005 10 6 1.8739 -2.5158 0.0001 11 8 0.6890 -2.7891 0.0016 12 7 2.7930 -3.5016 0.0000 13 6 2.3645 -4.9025 0.0000 14 6 3.5946 -5.8122 -0.0008 15 1 4.3656 -5.4808 -0.6965 16 6 4.1273 -6.1293 1.4065 17 6 4.3676 -7.5636 0.9069 18 1 5.3507 -7.7128 0.4603 19 7 4.0284 -8.5929 1.8925 20 6 5.0232 -9.2906 2.5240 21 1 6.0580 -9.0817 2.2957 22 6 4.7018 -10.2664 3.4575 23 7 5.6580 -10.9366 4.0648 24 14 2.9121 -10.6273 3.8530 25 1 2.4075 -11.6853 2.9414 26 1 2.7997 -11.0905 5.2594 27 1 2.1068 -9.3928 3.6725 28 6 3.2554 -7.3070 -0.1236 29 1 -0.3632 -0.0007 1.0277 30 1 -0.3633 0.8904 -0.5130 31 1 -0.3633 -0.8895 -0.5145 32 1 5.6817 1.1418 0.0087 33 1 3.7478 3.1415 -1.2476 34 1 5.5228 3.2779 -1.2402 35 1 4.7356 1.9556 -2.1341 36 1 3.7373 3.1400 1.2508 37 1 4.7174 1.9529 2.1442 38 1 5.5117 3.2769 1.2582 39 1 4.5929 -1.1841 -0.0025 40 1 3.7381 -3.2836 -0.0008 41 1 1.7670 -5.0996 0.8901 42 1 1.7667 -5.0996 -0.8899 43 1 5.0436 -5.5948 1.6572 44 1 3.3688 -6.0598 2.1864 45 1 3.0991 -8.7803 2.0979 46 1 5.4335 -11.6182 4.7174 47 1 2.2586 -7.5596 0.2379 48 1 3.4665 -7.7233 -1.1086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086242568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:28 Heat of formation + Delta-G solvation = -10.091153 kcal Electronic energy + Delta-G solvation = -26166.430010 eV Core-core repulsion = 22416.335315 eV Total energy + Delta-G solvation = -3750.094695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.92547 -39.67076 -38.50234 -36.12101 -34.78218 -33.47388 -33.12617 -31.59408 -30.73873 -28.09552 -27.65007 -26.67581 -25.20575 -23.99350 -23.08454 -22.19248 -21.30666 -20.89371 -19.76733 -19.04859 -17.43883 -17.24610 -16.68392 -16.14574 -16.09706 -15.33550 -15.18125 -14.96293 -14.64978 -14.53667 -14.04728 -13.77651 -13.69951 -13.37813 -13.27844 -13.14722 -13.07715 -12.66855 -12.64998 -12.37476 -12.20314 -11.98088 -11.71159 -11.66226 -11.62295 -11.59366 -11.39860 -10.89851 -10.49255 -10.36209 -10.16253 -10.03382 -9.94893 -9.80602 -9.55047 -9.08701 -8.90369 -8.66633 -7.27611 -5.79134 -3.14628 1.13908 1.72837 2.39006 3.16231 3.25395 3.37428 3.40609 3.45163 3.98312 4.34595 4.52073 4.57709 4.59615 4.59842 4.78304 4.87117 4.87985 4.97265 5.11083 5.14697 5.14926 5.24892 5.26374 5.33439 5.38705 5.41081 5.42314 5.48475 5.60366 5.65804 5.72856 5.73395 5.74097 5.80394 5.85347 5.91743 6.03003 6.17230 6.19234 6.23349 6.40422 6.50123 6.68334 6.78627 6.97674 7.46322 7.97292 8.15987 8.40701 9.18600 9.91420 10.11240 11.39062 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002201 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.055853 B =12720.732836 C =13382.906432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.075 3.925 3 O -0.171 6.171 4 C -0.003 4.003 5 C -0.014 4.014 6 C -0.149 4.149 7 C -0.150 4.150 8 C -0.184 4.184 9 C -0.241 4.241 10 C 0.587 3.413 11 O -0.546 6.546 12 N -0.717 5.717 13 C 0.133 3.867 14 C -0.127 4.127 15 H 0.091 0.909 16 C -0.161 4.161 17 C 0.172 3.828 18 H 0.084 0.916 19 N -0.737 5.737 20 C -0.248 4.248 21 H 0.091 0.909 22 C 0.004 3.996 23 N -0.933 5.933 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.145 4.145 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.156 0.844 40 H 0.400 0.600 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.363 0.637 46 H 0.260 0.740 47 H 0.078 0.922 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 29.206 -11.839 31.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.022 3.978 3 O -0.068 6.068 4 C -0.052 4.052 5 C -0.032 4.032 6 C -0.207 4.207 7 C -0.207 4.207 8 C -0.203 4.203 9 C -0.246 4.246 10 C 0.375 3.625 11 O -0.426 6.426 12 N -0.368 5.368 13 C 0.010 3.990 14 C -0.146 4.146 15 H 0.109 0.891 16 C -0.202 4.202 17 C 0.061 3.939 18 H 0.102 0.898 19 N -0.377 5.377 20 C -0.378 4.378 21 H 0.109 0.891 22 C -0.192 4.192 23 N -0.581 5.581 24 Si 0.714 3.286 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.185 4.185 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.174 0.826 40 H 0.235 0.765 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.196 0.804 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.227 29.134 -11.730 31.839 hybrid contribution -0.589 -0.429 0.460 0.862 sum -5.816 28.705 -11.270 31.382 Atomic orbital electron populations 1.20609 0.83729 1.04985 1.04437 1.22789 0.93967 0.82985 0.98017 1.83669 1.16572 1.34999 1.71543 1.22182 0.82534 0.94451 1.06020 1.19820 0.92110 0.94282 0.96995 1.21877 1.02664 0.99548 0.96586 1.21882 1.02665 0.99573 0.96623 1.22599 0.96680 0.93523 1.07521 1.21138 0.93230 0.93891 1.16319 1.17201 0.85499 0.83746 0.76014 1.90748 1.16633 1.84133 1.51081 1.45820 1.09663 1.06348 1.74926 1.21439 0.96841 0.78580 1.02141 1.22639 0.96840 0.95260 0.99883 0.89105 1.23917 1.00621 1.00965 0.94665 1.21502 0.96248 0.87075 0.89118 0.89798 1.42762 1.05236 1.42692 1.46988 1.19135 0.89264 1.12798 1.16574 0.89149 1.24699 0.96881 0.98562 0.99027 1.69699 1.30652 1.27062 1.30641 0.86552 0.86224 0.78105 0.77681 1.21014 1.21707 1.20273 1.23465 1.00989 0.93399 1.00627 0.89351 0.90526 0.87236 0.87980 0.92079 0.91548 0.92118 0.92079 0.92027 0.91533 0.82642 0.76533 0.91234 0.91625 0.92328 0.90446 0.80442 0.93031 0.90323 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.89 36.01 0.36 -0.36 16 2 C 0.08 0.82 7.37 -34.96 -0.26 0.56 16 3 O -0.17 -1.75 10.52 7.66 0.08 -1.67 16 4 C 0.00 -0.03 5.79 -35.73 -0.21 -0.24 16 5 C -0.01 -0.08 3.32 -91.77 -0.30 -0.39 16 6 C -0.15 -0.78 9.18 37.16 0.34 -0.44 16 7 C -0.15 -0.84 9.17 37.16 0.34 -0.49 16 8 C -0.18 -1.73 10.45 -37.45 -0.39 -2.12 16 9 C -0.24 -2.82 6.31 -103.27 -0.65 -3.47 16 10 C 0.59 7.90 7.81 -12.54 -0.10 7.80 16 11 O -0.55 -8.81 14.85 5.27 0.08 -8.73 16 12 N -0.72 -8.42 5.55 -61.40 -0.34 -8.76 16 13 C 0.13 1.69 5.51 -4.05 -0.02 1.67 16 14 C -0.13 -1.61 3.75 -89.82 -0.34 -1.94 16 15 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 16 C -0.16 -2.53 7.43 -25.92 -0.19 -2.73 16 17 C 0.17 3.16 4.48 -67.13 -0.30 2.86 16 18 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 19 N -0.74 -17.26 5.21 -52.64 -0.27 -17.54 16 20 C -0.25 -6.95 10.45 -15.06 -0.16 -7.10 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 23 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 24 Si 0.88 22.20 27.74 -169.99 -4.71 17.48 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 28 C -0.15 -2.14 7.39 -25.92 -0.19 -2.33 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.11 1.11 6.49 -51.93 -0.34 0.77 16 32 H 0.10 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.16 1.10 7.74 -52.49 -0.41 0.70 16 40 H 0.40 3.81 7.64 -40.82 -0.31 3.50 16 41 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 45 H 0.36 8.40 5.79 -40.82 -0.24 8.16 16 46 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 47 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 394.11 15.07 5.94 5.94 Total: -1.00 -33.66 394.11 -8.66 -42.32 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.03 Total: 8.16 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.17 Total: -8.70 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.16 Total: -54.80 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.16 Total: -10.39 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.66 -8.66 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086242568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.225 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds